RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 PPP2R1AP30153 589 aa14.15□□□□□ -0.14
CCDC9-203ENST00000596938 MTHFSDQ2M296 383 aaKnown RBP14.15□□□□□ -0.14
CCDC9-203ENST00000596938 LINC00116Q8NCU8 138 aa14.15□□□□□ -0.14
CCDC9-203ENST00000596938 MAP3K5Q99683 1374 aa14.14□□□□□ -0.15
CCDC9-203ENST00000596938 SSFA2P28290 1259 aa14.14□□□□□ -0.15
CCDC9-203ENST00000596938 SLC4A9Q96Q91 983 aa14.14□□□□□ -0.15
CCDC9-203ENST00000596938 LGR6Q9HBX8 967 aa14.14□□□□□ -0.15
CCDC9-203ENST00000596938 COL3A1P02461 1466 aaPredicted RBP14.13□□□□□ -0.15
CCDC9-203ENST00000596938 RNMTO43148 476 aaKnown RBP14.13□□□□□ -0.15
CCDC9-203ENST00000596938 RC3H1Q5TC82 1133 aaKnown RBP14.13□□□□□ -0.15
CCDC9-203ENST00000596938 RBM42Q9BTD8 480 aaKnown RBP14.13□□□□□ -0.15
CCDC9-203ENST00000596938 SLC52A2Q9HAB3 445 aa14.13□□□□□ -0.15
CCDC9-203ENST00000596938 NUDCQ9Y266 331 aa14.13□□□□□ -0.15
CCDC9-203ENST00000596938 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.12□□□□□ -0.15
CCDC9-203ENST00000596938 AMIGO3Q86WK7 504 aa14.12□□□□□ -0.15
CCDC9-203ENST00000596938 ITGB4P16144 1822 aa14.11□□□□□ -0.15
CCDC9-203ENST00000596938 PTCD1O75127 700 aaKnown RBP14.11□□□□□ -0.15
CCDC9-203ENST00000596938 GAS2L2Q8NHY3 880 aa14.11□□□□□ -0.15
CCDC9-203ENST00000596938 QSER1Q2KHR3 1735 aa14.1□□□□□ -0.15
CCDC9-203ENST00000596938 GNPATO15228 680 aa14.1□□□□□ -0.15
CCDC9-203ENST00000596938 RTCBQ9Y3I0 505 aaKnown RBP14.1□□□□□ -0.15
CCDC9-203ENST00000596938 RPS6KA4O75676 772 aa14.09□□□□□ -0.15
CCDC9-203ENST00000596938 FCHSD2O94868 740 aa14.09□□□□□ -0.15
CCDC9-203ENST00000596938 PHF14O94880 888 aa14.09□□□□□ -0.15
CCDC9-203ENST00000596938 TRAPPC3LQ5T215 181 aa14.09□□□□□ -0.15
CCDC9-203ENST00000596938 SMIM5Q71RC9 77 aa14.09□□□□□ -0.15
CCDC9-203ENST00000596938 RSPH6AQ9H0K4 717 aa14.09□□□□□ -0.15
CCDC9-203ENST00000596938 CNTNAP4Q9C0A0 1308 aa14.09□□□□□ -0.15
CCDC9-203ENST00000596938 C5P01031 1676 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 C4BP0C0L5 1744 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 GNAT3A8MTJ3 354 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 U2AF1L5P0DN76 240 aaPredicted RBP14.08□□□□□ -0.16
CCDC9-203ENST00000596938 ADRA2BP18089 450 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 U2AF1Q01081 240 aaKnown RBP eCLIP14.08□□□□□ -0.16
CCDC9-203ENST00000596938 MSL1Q68DK7 614 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 IL17REQ8NFR9 667 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 PHACTR3Q96KR7 559 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 UTRNP46939 3433 aa14.08□□□□□ -0.16
CCDC9-203ENST00000596938 PRKAR2BP31323 418 aa14.07□□□□□ -0.16
CCDC9-203ENST00000596938 ARHGEF1Q92888 912 aaKnown RBP14.07□□□□□ -0.16
CCDC9-203ENST00000596938 VSIG10Q8N0Z9 540 aa14.06□□□□□ -0.16
CCDC9-203ENST00000596938 CD2APQ9Y5K6 639 aa14.06□□□□□ -0.16
CCDC9-203ENST00000596938 COL24A1Q17RW2 1714 aa14.05□□□□□ -0.16
CCDC9-203ENST00000596938 CRKLP46109 303 aaKnown RBP14.05□□□□□ -0.16
CCDC9-203ENST00000596938 SLC39A6Q13433 755 aa14.05□□□□□ -0.16
CCDC9-203ENST00000596938 NLGN1Q8N2Q7 840 aa14.05□□□□□ -0.16
CCDC9-203ENST00000596938 ZNF831Q5JPB2 1677 aa14.04□□□□□ -0.16
CCDC9-203ENST00000596938 TAF1LQ8IZX4 1826 aa14.04□□□□□ -0.16
CCDC9-203ENST00000596938 TEFQ10587 303 aa14.04□□□□□ -0.16
CCDC9-203ENST00000596938 DDX10Q13206 875 aaKnown RBP14.04□□□□□ -0.16
CCDC9-203ENST00000596938 RALBP1Q15311 655 aa14.04□□□□□ -0.16
CCDC9-203ENST00000596938 INTS5Q6P9B9 1019 aaKnown RBP14.04□□□□□ -0.16
CCDC9-203ENST00000596938 KLHL34Q8N239 644 aa14.04□□□□□ -0.16
CCDC9-203ENST00000596938 MRC1P22897 1456 aa14.04□□□□□ -0.16
CCDC9-203ENST00000596938 GOLGB1Q14789 3259 aaKnown RBP14.03□□□□□ -0.16
CCDC9-203ENST00000596938 HTATSF1O43719 755 aaKnown RBP14.03□□□□□ -0.16
CCDC9-203ENST00000596938 CYP19A1P11511 503 aaPredicted RBP14.03□□□□□ -0.16
CCDC9-203ENST00000596938 YY1P25490 414 aa14.03□□□□□ -0.16
CCDC9-203ENST00000596938 RFC4P35249 363 aa14.03□□□□□ -0.16
CCDC9-203ENST00000596938 DNAJC10Q8IXB1 793 aa14.03□□□□□ -0.16
CCDC9-203ENST00000596938 NLGN2Q8NFZ4 835 aa14.03□□□□□ -0.16
CCDC9-203ENST00000596938 TUBGCP6Q96RT7 1819 aa14.03□□□□□ -0.16
CCDC9-203ENST00000596938 CEMIPQ8WUJ3 1361 aa14.02□□□□□ -0.17
CCDC9-203ENST00000596938 GPR162Q16538 588 aa14.02□□□□□ -0.17
CCDC9-203ENST00000596938 ZNF790Q6PG37 636 aa14.02□□□□□ -0.17
CCDC9-203ENST00000596938 TTC5Q8N0Z6 440 aa14.02□□□□□ -0.17
CCDC9-203ENST00000596938 CCDC87Q9NVE4 849 aa14.02□□□□□ -0.17
CCDC9-203ENST00000596938 GYS1P13807 737 aa14.01□□□□□ -0.17
CCDC9-203ENST00000596938 RTF1Q92541 710 aaKnown RBP14.01□□□□□ -0.17
CCDC9-203ENST00000596938 MMP10P09238 476 aa14□□□□□ -0.17
CCDC9-203ENST00000596938 TEX13AQ9BXU3 409 aaPredicted RBP14□□□□□ -0.17
CCDC9-203ENST00000596938 PNNQ9H307 717 aaKnown RBP14□□□□□ -0.17
CCDC9-203ENST00000596938 SCN11AQ9UI33 1791 aa14□□□□□ -0.17
CCDC9-203ENST00000596938 ADAMTS7Q9UKP4 1686 aa14□□□□□ -0.17
CCDC9-203ENST00000596938 UBR3Q6ZT12 1888 aa13.99□□□□□ -0.17
CCDC9-203ENST00000596938 STARD3NLO95772 234 aa13.99□□□□□ -0.17
CCDC9-203ENST00000596938 ZEB1P37275 1124 aaPredicted RBP13.99□□□□□ -0.17
CCDC9-203ENST00000596938 ZNF496Q96IT1 587 aaPredicted RBP13.99□□□□□ -0.17
CCDC9-203ENST00000596938 PLEKHF1Q96S99 279 aa13.99□□□□□ -0.17
CCDC9-203ENST00000596938 BTBD11A6QL63 1104 aa13.98□□□□□ -0.17
CCDC9-203ENST00000596938 GRIN3BO60391 1043 aa13.98□□□□□ -0.17
CCDC9-203ENST00000596938 NEFMP07197 916 aa13.98□□□□□ -0.17
CCDC9-203ENST00000596938 SOS1Q07889 1333 aaPredicted RBP13.97□□□□□ -0.17
CCDC9-203ENST00000596938 USP42Q9H9J4 1324 aaKnown RBP13.97□□□□□ -0.17
CCDC9-203ENST00000596938 KCPQ6ZWJ8 1503 aa13.97□□□□□ -0.17
CCDC9-203ENST00000596938 MCM10Q7L590 875 aa13.97□□□□□ -0.17
CCDC9-203ENST00000596938 FMNL2Q96PY5 1086 aa13.97□□□□□ -0.17
CCDC9-203ENST00000596938 HEG1Q9ULI3 1381 aa13.96□□□□□ -0.17
CCDC9-203ENST00000596938 ZPR1O75312 459 aa13.96□□□□□ -0.17
CCDC9-203ENST00000596938 YBX3P16989 372 aaKnown RBP eCLIP13.96□□□□□ -0.17
CCDC9-203ENST00000596938 TGFB2P61812 414 aa13.96□□□□□ -0.17
CCDC9-203ENST00000596938 PELP1Q8IZL8 1130 aaKnown RBP13.96□□□□□ -0.17
CCDC9-203ENST00000596938 SRP68Q9UHB9 627 aaKnown RBP13.96□□□□□ -0.17
CCDC9-203ENST00000596938 ZBTB1Q9Y2K1 713 aa13.96□□□□□ -0.17
CCDC9-203ENST00000596938 PARP3Q9Y6F1 533 aa13.96□□□□□ -0.17
CCDC9-203ENST00000596938 MYBBP1AQ9BQG0 1328 aaKnown RBP13.95□□□□□ -0.18
CCDC9-203ENST00000596938 CICQ96RK0 1608 aaPredicted RBP13.95□□□□□ -0.18
CCDC9-203ENST00000596938 KCNQ3O43525 872 aa13.95□□□□□ -0.18
CCDC9-203ENST00000596938 TM4SF1P30408 202 aa13.95□□□□□ -0.18
CCDC9-203ENST00000596938 EIF5P55010 431 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms