RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 TEFQ10587 303 aa22.91■■□□□ 1.26
SHKBP1-212ENST00000596163 AKT1S1Q96B36 256 aa22.91■■□□□ 1.26
SHKBP1-212ENST00000596163 ITGB4P16144 1822 aa22.91■■□□□ 1.26
SHKBP1-212ENST00000596163 HTATSF1O43719 755 aaKnown RBP22.9■■□□□ 1.26
SHKBP1-212ENST00000596163 ATP6V1AP38606 617 aa22.9■■□□□ 1.26
SHKBP1-212ENST00000596163 RBM42Q9BTD8 480 aaKnown RBP22.9■■□□□ 1.26
SHKBP1-212ENST00000596163 TFCP2L1Q9NZI6 479 aa22.9■■□□□ 1.26
SHKBP1-212ENST00000596163 LY75O60449 1722 aa22.88■■□□□ 1.25
SHKBP1-212ENST00000596163 ZNF827Q17R98 1081 aa22.88■■□□□ 1.25
SHKBP1-212ENST00000596163 IL17REQ8NFR9 667 aa22.88■■□□□ 1.25
SHKBP1-212ENST00000596163 PLEKHF1Q96S99 279 aa22.88■■□□□ 1.25
SHKBP1-212ENST00000596163 FLAD1Q8NFF5 587 aa22.86■■□□□ 1.25
SHKBP1-212ENST00000596163 NFE2L2Q16236 605 aa22.85■■□□□ 1.25
SHKBP1-212ENST00000596163 AK7Q96M32 723 aa22.85■■□□□ 1.25
SHKBP1-212ENST00000596163 SPON1Q9HCB6 807 aa22.85■■□□□ 1.25
SHKBP1-212ENST00000596163 PAPPAQ13219 1627 aa22.84■■□□□ 1.25
SHKBP1-212ENST00000596163 PTCD1O75127 700 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-212ENST00000596163 TTC5Q8N0Z6 440 aa22.84■■□□□ 1.25
SHKBP1-212ENST00000596163 SLC16A10Q8TF71 515 aa22.83■■□□□ 1.25
SHKBP1-212ENST00000596163 CEMIPQ8WUJ3 1361 aa22.83■■□□□ 1.25
SHKBP1-212ENST00000596163 MRC1P22897 1456 aa22.83■■□□□ 1.25
SHKBP1-212ENST00000596163 SCN11AQ9UI33 1791 aa22.83■■□□□ 1.24
SHKBP1-212ENST00000596163 ITPK1Q13572 414 aa22.82■■□□□ 1.24
SHKBP1-212ENST00000596163 LINC00116Q8NCU8 138 aa22.81■■□□□ 1.24
SHKBP1-212ENST00000596163 RUNDC1Q96C34 613 aa22.81■■□□□ 1.24
SHKBP1-212ENST00000596163 ADAMTS8Q9UP79 889 aa22.81■■□□□ 1.24
SHKBP1-212ENST00000596163 SLC39A6Q13433 755 aa22.8■■□□□ 1.24
SHKBP1-212ENST00000596163 MCM10Q7L590 875 aa22.8■■□□□ 1.24
SHKBP1-212ENST00000596163 SLC4A9Q96Q91 983 aa22.8■■□□□ 1.24
SHKBP1-212ENST00000596163 MTFR1LQ9H019 292 aa22.8■■□□□ 1.24
SHKBP1-212ENST00000596163 ADAMTS7Q9UKP4 1686 aa22.8■■□□□ 1.24
SHKBP1-212ENST00000596163 PNPLA7Q6ZV29 1317 aa22.8■■□□□ 1.24
SHKBP1-212ENST00000596163 BTBD11A6QL63 1104 aa22.79■■□□□ 1.24
SHKBP1-212ENST00000596163 MSH5O43196 834 aa22.79■■□□□ 1.24
SHKBP1-212ENST00000596163 ZBTB7AO95365 584 aa22.79■■□□□ 1.24
SHKBP1-212ENST00000596163 RC3H1Q5TC82 1133 aaKnown RBP22.79■■□□□ 1.24
SHKBP1-212ENST00000596163 PDGFDQ9GZP0 370 aaPredicted RBP22.79■■□□□ 1.24
SHKBP1-212ENST00000596163 LMOD3Q0VAK6 560 aa22.78■■□□□ 1.24
SHKBP1-212ENST00000596163 ZNF790Q6PG37 636 aa22.78■■□□□ 1.24
SHKBP1-212ENST00000596163 VSIG10Q8N0Z9 540 aa22.78■■□□□ 1.24
SHKBP1-212ENST00000596163 RIPK4P57078 832 aa22.77■■□□□ 1.24
SHKBP1-212ENST00000596163 DCTN1Q14203 1278 aa22.77■■□□□ 1.24
SHKBP1-212ENST00000596163 TAF7Q15545 349 aaPredicted RBP22.77■■□□□ 1.24
SHKBP1-212ENST00000596163 GNPATO15228 680 aa22.76■■□□□ 1.23
SHKBP1-212ENST00000596163 SSFA2P28290 1259 aa22.76■■□□□ 1.23
SHKBP1-212ENST00000596163 TMPOP42166 694 aaKnown RBP22.76■■□□□ 1.23
SHKBP1-212ENST00000596163 CCDC146Q8IYE0 955 aa22.76■■□□□ 1.23
SHKBP1-212ENST00000596163 PNISRQ8TF01 805 aaKnown RBP22.76■■□□□ 1.23
SHKBP1-212ENST00000596163 ATF5Q9Y2D1 282 aaPredicted RBP22.76■■□□□ 1.23
SHKBP1-212ENST00000596163 C5P01031 1676 aa22.75■■□□□ 1.23
SHKBP1-212ENST00000596163 COL23A1Q86Y22 540 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-212ENST00000596163 TEX13AQ9BXU3 409 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-212ENST00000596163 MRS2Q9HD23 443 aa22.75■■□□□ 1.23
SHKBP1-212ENST00000596163 PPP1R1BQ9UD71 204 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-212ENST00000596163 RTCBQ9Y3I0 505 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-212ENST00000596163 CNTNAP4Q9C0A0 1308 aa22.75■■□□□ 1.23
SHKBP1-212ENST00000596163 FMNL2Q96PY5 1086 aa22.74■■□□□ 1.23
SHKBP1-212ENST00000596163 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-212ENST00000596163 ZNF831Q5JPB2 1677 aa22.73■■□□□ 1.23
SHKBP1-212ENST00000596163 C4BP0C0L5 1744 aa22.73■■□□□ 1.23
SHKBP1-212ENST00000596163 LRP5O75197 1615 aa22.72■■□□□ 1.23
SHKBP1-212ENST00000596163 CASZ1Q86V15 1759 aa22.72■■□□□ 1.23
SHKBP1-212ENST00000596163 RPS6KA4O75676 772 aa22.72■■□□□ 1.23
SHKBP1-212ENST00000596163 PHF14O94880 888 aa22.72■■□□□ 1.23
SHKBP1-212ENST00000596163 STARD3NLO95772 234 aa22.72■■□□□ 1.23
SHKBP1-212ENST00000596163 TRAPPC3LQ5T215 181 aa22.72■■□□□ 1.23
SHKBP1-212ENST00000596163 DNAJC10Q8IXB1 793 aa22.72■■□□□ 1.23
SHKBP1-212ENST00000596163 ADRA2BP18089 450 aa22.71■■□□□ 1.23
SHKBP1-212ENST00000596163 POLD1P28340 1107 aa22.71■■□□□ 1.23
SHKBP1-212ENST00000596163 CRKLP46109 303 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-212ENST00000596163 ZNF496Q96IT1 587 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-212ENST00000596163 NEUROD2Q15784 382 aa22.7■■□□□ 1.22
SHKBP1-212ENST00000596163 CCDC184Q52MB2 194 aa22.7■■□□□ 1.22
SHKBP1-212ENST00000596163 TAF1LQ8IZX4 1826 aa22.7■■□□□ 1.22
SHKBP1-212ENST00000596163 QSER1Q2KHR3 1735 aa22.69■■□□□ 1.22
SHKBP1-212ENST00000596163 HEG1Q9ULI3 1381 aa22.69■■□□□ 1.22
SHKBP1-212ENST00000596163 CYP19A1P11511 503 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-212ENST00000596163 CCDC87Q9NVE4 849 aa22.69■■□□□ 1.22
SHKBP1-212ENST00000596163 RRP7AQ9Y3A4 280 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-212ENST00000596163 KCPQ6ZWJ8 1503 aa22.68■■□□□ 1.22
SHKBP1-212ENST00000596163 PTGER2P43116 358 aa22.68■■□□□ 1.22
SHKBP1-212ENST00000596163 KCNQ3O43525 872 aa22.67■■□□□ 1.22
SHKBP1-212ENST00000596163 BABAM1Q9NWV8 329 aa22.67■■□□□ 1.22
SHKBP1-212ENST00000596163 VIRMAQ69YN4 1812 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-212ENST00000596163 SNRPA1P09661 255 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-212ENST00000596163 RFC4P35249 363 aa22.66■■□□□ 1.22
SHKBP1-212ENST00000596163 INTS5Q6P9B9 1019 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-212ENST00000596163 THUMPD2Q9BTF0 503 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-212ENST00000596163 AMIGO3Q86WK7 504 aa22.65■■□□□ 1.22
SHKBP1-212ENST00000596163 ARHGEF1Q92888 912 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-212ENST00000596163 SGIP1Q9BQI5 828 aa22.65■■□□□ 1.22
SHKBP1-212ENST00000596163 MIS18AQ9NYP9 233 aa22.65■■□□□ 1.22
SHKBP1-212ENST00000596163 APAF1O14727 1248 aa22.64■■□□□ 1.21
SHKBP1-212ENST00000596163 ARXQ96QS3 562 aa22.64■■□□□ 1.21
SHKBP1-212ENST00000596163 SIPA1L3O60292 1781 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-212ENST00000596163 SMIM5Q71RC9 77 aa22.63■■□□□ 1.21
SHKBP1-212ENST00000596163 CICQ96RK0 1608 aaPredicted RBP22.62■■□□□ 1.21
SHKBP1-212ENST00000596163 NPM2Q86SE8 214 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-212ENST00000596163 TSPYL4Q9UJ04 414 aa22.62■■□□□ 1.21
SHKBP1-212ENST00000596163 TRIM35Q9UPQ4 493 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms