RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 GCC1Q96CN9 775 aa21.23■□□□□ 0.99
SHKBP1-205ENST00000594973 XRCC6P12956 609 aaKnown RBP eCLIP21.23■□□□□ 0.99
SHKBP1-205ENST00000594973 PLEKHO1Q53GL0 409 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-205ENST00000594973 CCDC30Q5VVM6 783 aa21.22■□□□□ 0.99
SHKBP1-205ENST00000594973 MPRIPQ6WCQ1 1025 aa21.22■□□□□ 0.99
SHKBP1-205ENST00000594973 CABLES1Q8TDN4 633 aa21.22■□□□□ 0.99
SHKBP1-205ENST00000594973 MEIS3Q99687 375 aa21.22■□□□□ 0.99
SHKBP1-205ENST00000594973 PHRF1Q9P1Y6 1649 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-205ENST00000594973 CEMIPQ8WUJ3 1361 aa21.21■□□□□ 0.99
SHKBP1-205ENST00000594973 AKAP4Q5JQC9 854 aa21.2■□□□□ 0.98
SHKBP1-205ENST00000594973 BABAM1Q9NWV8 329 aa21.2■□□□□ 0.98
SHKBP1-205ENST00000594973 DCCP43146 1447 aa21.2■□□□□ 0.98
SHKBP1-205ENST00000594973 FLIIQ13045 1269 aa21.2■□□□□ 0.98
SHKBP1-205ENST00000594973 FKBP5Q13451 457 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-205ENST00000594973 ANTXR1Q9H6X2 564 aa21.2■□□□□ 0.98
SHKBP1-205ENST00000594973 TEFQ10587 303 aa21.19■□□□□ 0.98
SHKBP1-205ENST00000594973 C1orf141Q5JVX7 400 aa21.19■□□□□ 0.98
SHKBP1-205ENST00000594973 AMOTQ4VCS5 1084 aa21.18■□□□□ 0.98
SHKBP1-205ENST00000594973 UPF2Q9HAU5 1272 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-205ENST00000594973 NPHP3Q7Z494 1330 aa21.18■□□□□ 0.98
SHKBP1-205ENST00000594973 HDGFL1Q5TGJ6 251 aa21.18■□□□□ 0.98
SHKBP1-205ENST00000594973 ERBB3P21860 1342 aa21.18■□□□□ 0.98
SHKBP1-205ENST00000594973 MED1Q15648 1581 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-205ENST00000594973 NCOA3Q9Y6Q9 1424 aa21.17■□□□□ 0.98
SHKBP1-205ENST00000594973 PXDNQ92626 1479 aa21.17■□□□□ 0.98
SHKBP1-205ENST00000594973 KCNQ3O43525 872 aa21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 EIF2S2P20042 333 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 CEP85Q6P2H3 762 aa21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 NLRP2Q9NX02 1062 aa21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 BTBD11A6QL63 1104 aa21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 CCT4P50991 539 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 ANKRD44Q8N8A2 993 aa21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 ALS2Q96Q42 1657 aa21.16■□□□□ 0.98
SHKBP1-205ENST00000594973 KDM4FA0A1W2PPD8 638 aa21.15■□□□□ 0.98
SHKBP1-205ENST00000594973 ATP10DQ9P241 1426 aa21.15■□□□□ 0.98
SHKBP1-205ENST00000594973 EIF4A1P60842 406 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-205ENST00000594973 CHRNA2Q15822 529 aa21.14■□□□□ 0.97
SHKBP1-205ENST00000594973 RPAP2Q8IXW5 612 aaPredicted RBP21.14■□□□□ 0.97
SHKBP1-205ENST00000594973 RNMTO43148 476 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 DCTPP1Q9H773 170 aa21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 TPM2P07951 284 aa21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 MRE11P49959 708 aa21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 MFAP1P55081 439 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 ISY1Q9ULR0 285 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 SOS1Q07889 1333 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 NCAPD2Q15021 1401 aa21.13■□□□□ 0.97
SHKBP1-205ENST00000594973 APBB1O00213 710 aa21.12■□□□□ 0.97
SHKBP1-205ENST00000594973 CSB-PGBD3P0DP91 1061 aa21.12■□□□□ 0.97
SHKBP1-205ENST00000594973 PHAXQ9H814 394 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-205ENST00000594973 TBC1D32Q96NH3 1257 aa21.12■□□□□ 0.97
SHKBP1-205ENST00000594973 RGPD5Q99666 1765 aa21.12■□□□□ 0.97
SHKBP1-205ENST00000594973 FAM208AQ9UK61 1670 aaKnown RBP21.11■□□□□ 0.97
SHKBP1-205ENST00000594973 TNS3Q68CZ2 1445 aa21.11■□□□□ 0.97
SHKBP1-205ENST00000594973 RAPGEF4Q8WZA2 1011 aa21.11■□□□□ 0.97
SHKBP1-205ENST00000594973 LMTK3Q96Q04 1460 aa21.1■□□□□ 0.97
SHKBP1-205ENST00000594973 ZNF335Q9H4Z2 1342 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-205ENST00000594973 BRINP3Q76B58 766 aa21.1■□□□□ 0.97
SHKBP1-205ENST00000594973 SLKQ9H2G2 1235 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-205ENST00000594973 SPATA31A3Q5VYP0 1347 aa21.1■□□□□ 0.97
SHKBP1-205ENST00000594973 PDCL3Q9H2J4 239 aa21.1■□□□□ 0.97
SHKBP1-205ENST00000594973 LMO7Q8WWI1 1683 aa21.09■□□□□ 0.97
SHKBP1-205ENST00000594973 CHPF2Q9P2E5 772 aa21.09■□□□□ 0.97
SHKBP1-205ENST00000594973 BMP2KLQ5H9B9 411 aa21.09■□□□□ 0.97
SHKBP1-205ENST00000594973 ESPNB1AK53 854 aa21.07■□□□□ 0.96
SHKBP1-205ENST00000594973 ANXA1P04083 346 aa21.07■□□□□ 0.96
SHKBP1-205ENST00000594973 GNAI2P04899 355 aa21.07■□□□□ 0.96
SHKBP1-205ENST00000594973 MCM4P33991 863 aa21.07■□□□□ 0.96
SHKBP1-205ENST00000594973 C16orf71Q8IYS4 520 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-205ENST00000594973 PANK2Q9BZ23 570 aa21.07■□□□□ 0.96
SHKBP1-205ENST00000594973 SMARCA5O60264 1052 aaPredicted RBP21.06■□□□□ 0.96
SHKBP1-205ENST00000594973 PODXL2Q9NZ53 605 aa21.06■□□□□ 0.96
SHKBP1-205ENST00000594973 C22orf23Q9BZE7 217 aa21.06■□□□□ 0.96
SHKBP1-205ENST00000594973 HMMRO75330 724 aa21.05■□□□□ 0.96
SHKBP1-205ENST00000594973 TATP17735 454 aaPredicted RBP21.05■□□□□ 0.96
SHKBP1-205ENST00000594973 CAMTA1Q9Y6Y1 1673 aa21.05■□□□□ 0.96
SHKBP1-205ENST00000594973 HOXB7P09629 217 aa21.05■□□□□ 0.96
SHKBP1-205ENST00000594973 PLEKHM2Q8IWE5 1019 aa21.05■□□□□ 0.96
SHKBP1-205ENST00000594973 GNAI3P08754 354 aa21.04■□□□□ 0.96
SHKBP1-205ENST00000594973 OTUD7AQ8TE49 926 aaPredicted RBP21.04■□□□□ 0.96
SHKBP1-205ENST00000594973 SLAIN2Q9P270 581 aa21.04■□□□□ 0.96
SHKBP1-205ENST00000594973 STRCQ7RTU9 1775 aa21.04■□□□□ 0.96
SHKBP1-205ENST00000594973 XIRP1Q702N8 1843 aaKnown RBP21.04■□□□□ 0.96
SHKBP1-205ENST00000594973 KDM3BQ7LBC6 1761 aa21.03■□□□□ 0.96
SHKBP1-205ENST00000594973 PRAMEF22A3QJZ6 481 aa21.03■□□□□ 0.96
SHKBP1-205ENST00000594973 LRRFIP2Q9Y608 721 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-205ENST00000594973 MEGF6O75095 1541 aa21.02■□□□□ 0.96
SHKBP1-205ENST00000594973 PI4KAP2A4QPH2 592 aa21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 GIGYF1O75420 1035 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 PI4KAP1Q8N8J0 262 aa21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 USP44Q9H0E7 712 aa21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 SPG7Q9UQ90 795 aa21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 GSPT1P15170 499 aaKnown RBP21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 EXOC6BQ9Y2D4 811 aa21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 OVOS2A0A0G2JMS6 1433 aa21.01■□□□□ 0.95
SHKBP1-205ENST00000594973 PHKG2P15735 406 aa21■□□□□ 0.95
SHKBP1-205ENST00000594973 SLC39A6Q13433 755 aa21■□□□□ 0.95
SHKBP1-205ENST00000594973 CHMP4AQ9BY43 222 aa21■□□□□ 0.95
SHKBP1-205ENST00000594973 TBC1D2Q9BYX2 928 aa21■□□□□ 0.95
SHKBP1-205ENST00000594973 CACNA1FO60840 1977 aa21■□□□□ 0.95
SHKBP1-205ENST00000594973 PNMA6EA0A0J9YXQ4 647 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms