RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 USP35Q9P2H5 1018 aa24.62■■□□□ 1.53
CLIP3-206ENST00000593074 BECN1Q14457 450 aa24.61■■□□□ 1.53
CLIP3-206ENST00000593074 PXDNLA1KZ92 1463 aa24.6■■□□□ 1.53
CLIP3-206ENST00000593074 FLIIQ13045 1269 aa24.6■■□□□ 1.53
CLIP3-206ENST00000593074 LGR6Q9HBX8 967 aa24.6■■□□□ 1.53
CLIP3-206ENST00000593074 STRCQ7RTU9 1775 aa24.59■■□□□ 1.53
CLIP3-206ENST00000593074 TNS3Q68CZ2 1445 aa24.59■■□□□ 1.53
CLIP3-206ENST00000593074 F6X3S4 739 aa24.59■■□□□ 1.53
CLIP3-206ENST00000593074 OVOS2A0A0G2JMS6 1433 aa24.59■■□□□ 1.53
CLIP3-206ENST00000593074 ERBB3P21860 1342 aa24.59■■□□□ 1.53
CLIP3-206ENST00000593074 SPATA31A3Q5VYP0 1347 aa24.59■■□□□ 1.53
CLIP3-206ENST00000593074 MFAP1P55081 439 aaKnown RBP24.58■■□□□ 1.53
CLIP3-206ENST00000593074 C1orf141Q5JVX7 400 aa24.58■■□□□ 1.53
CLIP3-206ENST00000593074 C22orf23Q9BZE7 217 aa24.58■■□□□ 1.53
CLIP3-206ENST00000593074 PXDNQ92626 1479 aa24.57■■□□□ 1.52
CLIP3-206ENST00000593074 BRINP3Q76B58 766 aa24.57■■□□□ 1.52
CLIP3-206ENST00000593074 CABLES1Q8TDN4 633 aa24.57■■□□□ 1.52
CLIP3-206ENST00000593074 ZNF335Q9H4Z2 1342 aaPredicted RBP24.56■■□□□ 1.52
CLIP3-206ENST00000593074 SLC4A10Q6U841 1118 aa24.56■■□□□ 1.52
CLIP3-206ENST00000593074 TEFQ10587 303 aa24.55■■□□□ 1.52
CLIP3-206ENST00000593074 HOXB7P09629 217 aa24.55■■□□□ 1.52
CLIP3-206ENST00000593074 FKBP5Q13451 457 aaPredicted RBP24.55■■□□□ 1.52
CLIP3-206ENST00000593074 XIRP1Q702N8 1843 aaKnown RBP24.54■■□□□ 1.52
CLIP3-206ENST00000593074 MPRIPQ6WCQ1 1025 aa24.54■■□□□ 1.52
CLIP3-206ENST00000593074 RGPD5Q99666 1765 aa24.54■■□□□ 1.52
CLIP3-206ENST00000593074 SLAIN2Q9P270 581 aa24.54■■□□□ 1.52
CLIP3-206ENST00000593074 RNMTO43148 476 aaKnown RBP24.53■■□□□ 1.52
CLIP3-206ENST00000593074 EIF4A1P60842 406 aaKnown RBP24.53■■□□□ 1.52
CLIP3-206ENST00000593074 HDGFL1Q5TGJ6 251 aa24.53■■□□□ 1.52
CLIP3-206ENST00000593074 NLRP2Q9NX02 1062 aa24.53■■□□□ 1.52
CLIP3-206ENST00000593074 PLEKHM2Q8IWE5 1019 aa24.52■■□□□ 1.52
CLIP3-206ENST00000593074 ADAMTS7Q9UKP4 1686 aa24.52■■□□□ 1.52
CLIP3-206ENST00000593074 HMMRO75330 724 aa24.52■■□□□ 1.52
CLIP3-206ENST00000593074 NECTIN2Q92692 538 aa24.52■■□□□ 1.52
CLIP3-206ENST00000593074 RAPGEF4Q8WZA2 1011 aa24.51■■□□□ 1.51
CLIP3-206ENST00000593074 BTBD11A6QL63 1104 aa24.5■■□□□ 1.51
CLIP3-206ENST00000593074 RBM25P49756 843 aaKnown RBP24.5■■□□□ 1.51
CLIP3-206ENST00000593074 CHMP4AQ9BY43 222 aa24.5■■□□□ 1.51
CLIP3-206ENST00000593074 TBC1D2Q9BYX2 928 aa24.5■■□□□ 1.51
CLIP3-206ENST00000593074 GNAI2P04899 355 aa24.5■■□□□ 1.51
CLIP3-206ENST00000593074 CSB-PGBD3P0DP91 1061 aa24.49■■□□□ 1.51
CLIP3-206ENST00000593074 SIPA1L3O60292 1781 aaPredicted RBP24.49■■□□□ 1.51
CLIP3-206ENST00000593074 GNAI3P08754 354 aa24.49■■□□□ 1.51
CLIP3-206ENST00000593074 GSPT1P15170 499 aaKnown RBP24.49■■□□□ 1.51
CLIP3-206ENST00000593074 CHRNA2Q15822 529 aa24.49■■□□□ 1.51
CLIP3-206ENST00000593074 ABCC6O95255 1503 aa24.48■■□□□ 1.51
CLIP3-206ENST00000593074 NFKBIBQ15653 356 aa24.48■■□□□ 1.51
CLIP3-206ENST00000593074 TBC1D9Q6ZT07 1266 aa24.48■■□□□ 1.51
CLIP3-206ENST00000593074 CRYBG1Q9Y4K1 1723 aa24.48■■□□□ 1.51
CLIP3-206ENST00000593074 COL18A1P39060 1754 aa24.48■■□□□ 1.51
CLIP3-206ENST00000593074 CPDO75976 1380 aa24.47■■□□□ 1.51
CLIP3-206ENST00000593074 TATP17735 454 aaPredicted RBP24.47■■□□□ 1.51
CLIP3-206ENST00000593074 TTC22Q5TAA0 569 aa24.46■■□□□ 1.51
CLIP3-206ENST00000593074 KCNQ3O43525 872 aa24.46■■□□□ 1.51
CLIP3-206ENST00000593074 SOS2Q07890 1332 aaPredicted RBP24.46■■□□□ 1.51
CLIP3-206ENST00000593074 CDC45O75419 566 aa24.45■■□□□ 1.5
CLIP3-206ENST00000593074 DEKP35659 375 aaKnown RBP24.44■■□□□ 1.5
CLIP3-206ENST00000593074 PHAXQ9H814 394 aaKnown RBP24.44■■□□□ 1.5
CLIP3-206ENST00000593074 SPG7Q9UQ90 795 aa24.44■■□□□ 1.5
CLIP3-206ENST00000593074 EIF2S2P20042 333 aaKnown RBP24.44■■□□□ 1.5
CLIP3-206ENST00000593074 C16orf71Q8IYS4 520 aaPredicted RBP24.44■■□□□ 1.5
CLIP3-206ENST00000593074 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.44■■□□□ 1.5
CLIP3-206ENST00000593074 HEG1Q9ULI3 1381 aa24.43■■□□□ 1.5
CLIP3-206ENST00000593074 ANTXR1Q9H6X2 564 aa24.43■■□□□ 1.5
CLIP3-206ENST00000593074 OTUD7AQ8TE49 926 aaPredicted RBP24.42■■□□□ 1.5
CLIP3-206ENST00000593074 CHPF2Q9P2E5 772 aa24.42■■□□□ 1.5
CLIP3-206ENST00000593074 PLEKHG2Q9H7P9 1386 aa24.41■■□□□ 1.5
CLIP3-206ENST00000593074 SMARCA5O60264 1052 aaPredicted RBP24.41■■□□□ 1.5
CLIP3-206ENST00000593074 USP44Q9H0E7 712 aa24.41■■□□□ 1.5
CLIP3-206ENST00000593074 ATP8B2P98198 1209 aa24.4■■□□□ 1.5
CLIP3-206ENST00000593074 EIF5BO60841 1220 aaKnown RBP24.39■■□□□ 1.5
CLIP3-206ENST00000593074 PHKG2P15735 406 aa24.38■■□□□ 1.49
CLIP3-206ENST00000593074 PRDM11Q9NQV5 511 aa24.38■■□□□ 1.49
CLIP3-206ENST00000593074 SCN11AQ9UI33 1791 aa24.38■■□□□ 1.49
CLIP3-206ENST00000593074 PNMA6EA0A0J9YXQ4 647 aa24.38■■□□□ 1.49
CLIP3-206ENST00000593074 APBB1O00213 710 aa24.38■■□□□ 1.49
CLIP3-206ENST00000593074 IFNL2Q8IZJ0 200 aa24.38■■□□□ 1.49
CLIP3-206ENST00000593074 SLKQ9H2G2 1235 aaPredicted RBP24.38■■□□□ 1.49
CLIP3-206ENST00000593074 OSBPL3Q9H4L5 887 aa24.38■■□□□ 1.49
CLIP3-206ENST00000593074 LRRFIP2Q9Y608 721 aaKnown RBP24.38■■□□□ 1.49
CLIP3-206ENST00000593074 UBTFL1P0CB47 393 aaPredicted RBP24.37■■□□□ 1.49
CLIP3-206ENST00000593074 IBTKQ9P2D0 1353 aaPredicted RBP24.37■■□□□ 1.49
CLIP3-206ENST00000593074 MEGF6O75095 1541 aa24.37■■□□□ 1.49
CLIP3-206ENST00000593074 SNX21Q969T3 373 aa24.36■■□□□ 1.49
CLIP3-206ENST00000593074 SRCIN1Q9C0H9 1055 aa24.36■■□□□ 1.49
CLIP3-206ENST00000593074 GIGYF1O75420 1035 aaPredicted RBP24.36■■□□□ 1.49
CLIP3-206ENST00000593074 KIF2CQ99661 725 aa24.36■■□□□ 1.49
CLIP3-206ENST00000593074 DBF4Q9UBU7 674 aaPredicted RBP24.36■■□□□ 1.49
CLIP3-206ENST00000593074 EXOC6BQ9Y2D4 811 aa24.35■■□□□ 1.49
CLIP3-206ENST00000593074 KDM6AO15550 1401 aaPredicted RBP24.35■■□□□ 1.49
CLIP3-206ENST00000593074 SALL3Q9BXA9 1300 aa24.35■■□□□ 1.49
CLIP3-206ENST00000593074 ADCY9O60503 1353 aa24.35■■□□□ 1.49
CLIP3-206ENST00000593074 DNAAF4Q8WXU2 420 aa24.34■■□□□ 1.49
CLIP3-206ENST00000593074 SLC52A2Q9HAB3 445 aa24.34■■□□□ 1.49
CLIP3-206ENST00000593074 SDSP20132 328 aa24.34■■□□□ 1.49
CLIP3-206ENST00000593074 BEND3Q5T5X7 828 aa24.34■■□□□ 1.49
CLIP3-206ENST00000593074 HSCBQ8IWL3 235 aa24.34■■□□□ 1.49
CLIP3-206ENST00000593074 TUBGCP6Q96RT7 1819 aa24.34■■□□□ 1.49
CLIP3-206ENST00000593074 PKD1L3Q7Z443 1732 aa24.33■■□□□ 1.49
CLIP3-206ENST00000593074 LRRCC1Q9C099 1032 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms