RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 KIF20BQ96Q89 1820 aa12.24□□□□□ -0.45
SMAD4-215ENST00000592911 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.24□□□□□ -0.451e-7■□□□□ 11.2
SMAD4-215ENST00000592911 NBPF6Q5VWK0 638 aa12.23□□□□□ -0.45
SMAD4-215ENST00000592911 MSL1Q68DK7 614 aa12.23□□□□□ -0.45
SMAD4-215ENST00000592911 NBPF4Q96M43 638 aa12.23□□□□□ -0.45
SMAD4-215ENST00000592911 WDR90Q96KV7 1748 aa12.23□□□□□ -0.45
SMAD4-215ENST00000592911 KIAA1551Q9HCM1 1747 aa12.23□□□□□ -0.45
SMAD4-215ENST00000592911 ANKRD26Q9UPS8 1709 aa12.23□□□□□ -0.45
SMAD4-215ENST00000592911 C10orf71Q711Q0 1435 aa12.22□□□□□ -0.45
SMAD4-215ENST00000592911 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.22□□□□□ -0.45
SMAD4-215ENST00000592911 RBM46Q8TBY0 533 aaKnown RBP12.21□□□□□ -0.45
SMAD4-215ENST00000592911 TESK2Q96S53 571 aa12.21□□□□□ -0.45
SMAD4-215ENST00000592911 LOC102724428A0A0B4J2F2 783 aa12.2□□□□□ -0.46
SMAD4-215ENST00000592911 CYP27B1O15528 508 aa12.2□□□□□ -0.46
SMAD4-215ENST00000592911 SIK1P57059 783 aa12.2□□□□□ -0.46
SMAD4-215ENST00000592911 FSTL1Q12841 308 aa12.2□□□□□ -0.46
SMAD4-215ENST00000592911 MPRIPQ6WCQ1 1025 aa12.2□□□□□ -0.46
SMAD4-215ENST00000592911 DNAJC5GQ8N7S2 189 aa12.2□□□□□ -0.46
SMAD4-215ENST00000592911 SIN3AQ96ST3 1273 aa12.2□□□□□ -0.46
SMAD4-215ENST00000592911 TONSLQ96HA7 1378 aa12.19□□□□□ -0.46
SMAD4-215ENST00000592911 FYB1O15117 783 aa12.19□□□□□ -0.46
SMAD4-215ENST00000592911 NLGN1Q8N2Q7 840 aa12.19□□□□□ -0.46
SMAD4-215ENST00000592911 JMYQ8N9B5 988 aa12.19□□□□□ -0.46
SMAD4-215ENST00000592911 SPG7Q9UQ90 795 aa12.19□□□□□ -0.46
SMAD4-215ENST00000592911 PXDNLA1KZ92 1463 aa12.19□□□□□ -0.46
SMAD4-215ENST00000592911 ZC3H4Q9UPT8 1303 aaKnown RBP12.18□□□□□ -0.46
SMAD4-215ENST00000592911 CDCA8Q53HL2 280 aa12.18□□□□□ -0.46
SMAD4-215ENST00000592911 ZNF526Q8TF50 670 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-215ENST00000592911 TNRC6CQ9HCJ0 1690 aaKnown RBP12.18□□□□□ -0.46
SMAD4-215ENST00000592911 NEUROD1Q13562 356 aa12.17□□□□□ -0.46
SMAD4-215ENST00000592911 PIGBQ92521 554 aa12.17□□□□□ -0.46
SMAD4-215ENST00000592911 N4BP2Q86UW6 1770 aaPredicted RBP12.17□□□□□ -0.46
SMAD4-215ENST00000592911 C4AP0C0L4 1744 aa12.17□□□□□ -0.46
SMAD4-215ENST00000592911 COL5A3P25940 1745 aaPredicted RBP12.17□□□□□ -0.46
SMAD4-215ENST00000592911 RRS1Q15050 365 aaKnown RBP12.16□□□□□ -0.46
SMAD4-215ENST00000592911 RC3H1Q5TC82 1133 aaKnown RBP12.16□□□□□ -0.46
SMAD4-215ENST00000592911 CCDC87Q9NVE4 849 aa12.16□□□□□ -0.46
SMAD4-215ENST00000592911 TMOD3Q9NYL9 352 aa12.16□□□□□ -0.46
SMAD4-215ENST00000592911 SBF1O95248 1867 aa12.15□□□□□ -0.46
SMAD4-215ENST00000592911 MMP10P09238 476 aa12.15□□□□□ -0.46
SMAD4-215ENST00000592911 TMF1P82094 1093 aa12.15□□□□□ -0.46
SMAD4-215ENST00000592911 HSP90AB2PQ58FF8 381 aa12.15□□□□□ -0.46
SMAD4-215ENST00000592911 LINC00116Q8NCU8 138 aa12.15□□□□□ -0.46
SMAD4-215ENST00000592911 KLRG1Q96E93 195 aa12.15□□□□□ -0.46
SMAD4-215ENST00000592911 KDRP35968 1356 aa12.15□□□□□ -0.46
SMAD4-215ENST00000592911 KDM2BQ8NHM5 1336 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 CNTNAP4Q9C0A0 1308 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 ST20-MTHFSA0A0A6YYL1 179 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 GNPATO15228 680 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 PHF14O94880 888 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 TRAPPC3LQ5T215 181 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 AMIGO3Q86WK7 504 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 C16orf71Q8IYS4 520 aaPredicted RBP12.14□□□□□ -0.47
SMAD4-215ENST00000592911 IFNL2Q8IZJ0 200 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 USHBP1Q8N6Y0 703 aa12.14□□□□□ -0.47
SMAD4-215ENST00000592911 RTCBQ9Y3I0 505 aaKnown RBP12.14□□□□□ -0.47
SMAD4-215ENST00000592911 WASHC2AQ641Q2 1341 aa12.13□□□□□ -0.47
SMAD4-215ENST00000592911 HSP90AB1P08238 724 aaKnown RBP12.13□□□□□ -0.47
SMAD4-215ENST00000592911 ATP6V1AP38606 617 aa12.13□□□□□ -0.47
SMAD4-215ENST00000592911 GGNBP2Q9H3C7 697 aa12.13□□□□□ -0.47
SMAD4-215ENST00000592911 PCNTO95613 3336 aa12.13□□□□□ -0.47
SMAD4-215ENST00000592911 ERVV-2B6SEH9 535 aa12.12□□□□□ -0.47
SMAD4-215ENST00000592911 BCS1LQ9Y276 419 aa12.12□□□□□ -0.47
SMAD4-215ENST00000592911 MYH14Q7Z406 1995 aaKnown RBP12.12□□□□□ -0.47
SMAD4-215ENST00000592911 FBLN1P23142 703 aa12.11□□□□□ -0.47
SMAD4-215ENST00000592911 REM2Q8IYK8 340 aaPredicted RBP12.11□□□□□ -0.47
SMAD4-215ENST00000592911 PARP3Q9Y6F1 533 aa12.11□□□□□ -0.47
SMAD4-215ENST00000592911 RPS6KA4O75676 772 aa12.1□□□□□ -0.47
SMAD4-215ENST00000592911 PHKG2P15735 406 aa12.1□□□□□ -0.47
SMAD4-215ENST00000592911 ITPK1Q13572 414 aa12.1□□□□□ -0.47
SMAD4-215ENST00000592911 ARHGAP27Q6ZUM4 889 aa12.1□□□□□ -0.47
SMAD4-215ENST00000592911 DCAF5Q96JK2 942 aa12.1□□□□□ -0.47
SMAD4-215ENST00000592911 PIM2Q9P1W9 311 aa12.1□□□□□ -0.47
SMAD4-215ENST00000592911 ASAP1Q9ULH1 1129 aa12.1□□□□□ -0.47
SMAD4-215ENST00000592911 FCHSD2O94868 740 aa12.09□□□□□ -0.47
SMAD4-215ENST00000592911 RFC4P35249 363 aa12.09□□□□□ -0.47
SMAD4-215ENST00000592911 PRELPP51888 382 aa12.09□□□□□ -0.47
SMAD4-215ENST00000592911 SMC1BQ8NDV3 1235 aa12.09□□□□□ -0.47
SMAD4-215ENST00000592911 NMRK2Q9NPI5 230 aa12.09□□□□□ -0.47
SMAD4-215ENST00000592911 ATG3Q9NT62 314 aa12.09□□□□□ -0.47
SMAD4-215ENST00000592911 GYS1P13807 737 aa12.08□□□□□ -0.48
SMAD4-215ENST00000592911 C9orf131Q5VYM1 1079 aa12.08□□□□□ -0.48
SMAD4-215ENST00000592911 KDM6AO15550 1401 aaPredicted RBP12.08□□□□□ -0.48
SMAD4-215ENST00000592911 A0A0G2JLW4 131 aa12.07□□□□□ -0.48
SMAD4-215ENST00000592911 DPEP1P16444 411 aa12.07□□□□□ -0.48
SMAD4-215ENST00000592911 DALRD3Q5D0E6 543 aaKnown RBP12.07□□□□□ -0.48
SMAD4-215ENST00000592911 ARHGEF1Q92888 912 aaKnown RBP12.07□□□□□ -0.48
SMAD4-215ENST00000592911 EYA1Q99502 592 aa12.07□□□□□ -0.48
SMAD4-215ENST00000592911 DLEC1Q9Y238 1755 aa12.07□□□□□ -0.48
SMAD4-215ENST00000592911 KCNA3P22001 575 aa12.06□□□□□ -0.48
SMAD4-215ENST00000592911 AMOTQ4VCS5 1084 aa12.06□□□□□ -0.48
SMAD4-215ENST00000592911 EMILIN1Q9Y6C2 1016 aa12.06□□□□□ -0.48
SMAD4-215ENST00000592911 DICER1Q9UPY3 1922 aaKnown RBP12.05□□□□□ -0.48
SMAD4-215ENST00000592911 NRXN2Q9P2S2 1712 aa12.05□□□□□ -0.48
SMAD4-215ENST00000592911 KCPQ6ZWJ8 1503 aa12.05□□□□□ -0.48
SMAD4-215ENST00000592911 COL13A1Q5TAT6 717 aaPredicted RBP12.04□□□□□ -0.48
SMAD4-215ENST00000592911 TNS4Q8IZW8 715 aa12.04□□□□□ -0.48
SMAD4-215ENST00000592911 USP42Q9H9J4 1324 aaKnown RBP12.04□□□□□ -0.48
SMAD4-215ENST00000592911 PLEKHO1Q53GL0 409 aaPredicted RBP12.03□□□□□ -0.48
SMAD4-215ENST00000592911 RNF181Q9P0P0 153 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 199.3 ms