RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 KDM3BQ7LBC6 1761 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 ABCC6O95255 1503 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 RGS12O14924 1447 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 MAP3K5Q99683 1374 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 KDM2BQ8NHM5 1336 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 VAMP4O75379 141 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 TWISTNBQ3B726 338 aaPredicted RBP11.21□□□□□ -0.61
SMAD4-206ENST00000588860 DZIP1LQ8IYY4 767 aaKnown RBP11.21□□□□□ -0.61
SMAD4-206ENST00000588860 TSPYL6Q8N831 410 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 ZNF428Q96B54 188 aa11.21□□□□□ -0.61
SMAD4-206ENST00000588860 ELL2O00472 640 aaPredicted RBP11.2□□□□□ -0.62
SMAD4-206ENST00000588860 IPO8O15397 1037 aaKnown RBP11.2□□□□□ -0.62
SMAD4-206ENST00000588860 MVPQ14764 893 aaKnown RBP11.2□□□□□ -0.62
SMAD4-206ENST00000588860 ATF7IPQ6VMQ6 1270 aa11.2□□□□□ -0.62
SMAD4-206ENST00000588860 C8orf58Q8NAV2 365 aa11.2□□□□□ -0.62
SMAD4-206ENST00000588860 ANKRD24Q8TF21 1146 aa11.2□□□□□ -0.62
SMAD4-206ENST00000588860 NCAPD2Q15021 1401 aa11.19□□□□□ -0.62
SMAD4-206ENST00000588860 SIPA1L3O60292 1781 aaPredicted RBP11.19□□□□□ -0.62
SMAD4-206ENST00000588860 GNAT3A8MTJ3 354 aa11.19□□□□□ -0.62
SMAD4-206ENST00000588860 CHL1O00533 1208 aa11.19□□□□□ -0.62
SMAD4-206ENST00000588860 HTATSF1O43719 755 aaKnown RBP11.19□□□□□ -0.62
SMAD4-206ENST00000588860 TRIM27P14373 513 aa11.19□□□□□ -0.62
SMAD4-206ENST00000588860 AAMPQ13685 434 aa11.19□□□□□ -0.62
SMAD4-206ENST00000588860 NBPF6Q5VWK0 638 aa11.19□□□□□ -0.62
SMAD4-206ENST00000588860 MRPL50Q8N5N7 158 aaKnown RBP11.19□□□□□ -0.62
SMAD4-206ENST00000588860 LRRC59Q96AG4 307 aaKnown RBP11.19□□□□□ -0.62
SMAD4-206ENST00000588860 NBPF4Q96M43 638 aa11.19□□□□□ -0.62
SMAD4-206ENST00000588860 RBM19Q9Y4C8 960 aaKnown RBP11.19□□□□□ -0.62
SMAD4-206ENST00000588860 SCN11AQ9UI33 1791 aa11.18□□□□□ -0.62
SMAD4-206ENST00000588860 KIAA0232Q92628 1395 aa11.18□□□□□ -0.62
SMAD4-206ENST00000588860 SPATA31A3Q5VYP0 1347 aa11.18□□□□□ -0.62
SMAD4-206ENST00000588860 ZC3H6P61129 1189 aaKnown RBP11.18□□□□□ -0.62
SMAD4-206ENST00000588860 BRINP3Q76B58 766 aa11.18□□□□□ -0.62
SMAD4-206ENST00000588860 ITPRIPQ8IWB1 547 aa11.18□□□□□ -0.62
SMAD4-206ENST00000588860 OTUD5Q96G74 571 aa11.18□□□□□ -0.62
SMAD4-206ENST00000588860 TSPYL4Q9UJ04 414 aa11.18□□□□□ -0.62
SMAD4-206ENST00000588860 TCERG1O14776 1098 aaKnown RBP11.17□□□□□ -0.62
SMAD4-206ENST00000588860 BRPF1P55201 1214 aaPredicted RBP11.17□□□□□ -0.62
SMAD4-206ENST00000588860 IFFO2Q5TF58 517 aa11.17□□□□□ -0.62
SMAD4-206ENST00000588860 N4BP2Q86UW6 1770 aaPredicted RBP11.17□□□□□ -0.62
SMAD4-206ENST00000588860 PARP4Q9UKK3 1724 aaKnown RBP11.16□□□□□ -0.62
SMAD4-206ENST00000588860 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
SMAD4-206ENST00000588860 KRT24Q2M2I5 525 aa11.16□□□□□ -0.62
SMAD4-206ENST00000588860 CCDC125Q86Z20 511 aa11.16□□□□□ -0.62
SMAD4-206ENST00000588860 TMEM57Q8N5G2 664 aa11.16□□□□□ -0.62
SMAD4-206ENST00000588860 CABLES1Q8TDN4 633 aa11.16□□□□□ -0.62
SMAD4-206ENST00000588860 NGLY1Q96IV0 654 aa11.16□□□□□ -0.62
SMAD4-206ENST00000588860 MIS18AQ9NYP9 233 aa11.16□□□□□ -0.62
SMAD4-206ENST00000588860 PKD1L3Q7Z443 1732 aa11.15□□□□□ -0.62
SMAD4-206ENST00000588860 ADAMTS7Q9UKP4 1686 aa11.15□□□□□ -0.62
SMAD4-206ENST00000588860 IGHDP01880 384 aa11.15□□□□□ -0.62
SMAD4-206ENST00000588860 PLEKHO1Q53GL0 409 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-206ENST00000588860 SKAP1Q86WV1 359 aa11.15□□□□□ -0.62
SMAD4-206ENST00000588860 DDX19BQ9UMR2 479 aa11.15□□□□□ -0.62
SMAD4-206ENST00000588860 AXIN2Q9Y2T1 843 aa11.15□□□□□ -0.62
SMAD4-206ENST00000588860 ZNF530Q6P9A1 599 aaPredicted RBP11.14□□□□□ -0.63
SMAD4-206ENST00000588860 IL17REQ8NFR9 667 aa11.14□□□□□ -0.63
SMAD4-206ENST00000588860 ARHGAP45Q92619 1136 aa11.14□□□□□ -0.63
SMAD4-206ENST00000588860 PCDHB15Q9Y5E8 787 aa11.14□□□□□ -0.63
SMAD4-206ENST00000588860 ERBB3P21860 1342 aa11.13□□□□□ -0.63
SMAD4-206ENST00000588860 POTEB2H3BUK9 544 aa11.13□□□□□ -0.63
SMAD4-206ENST00000588860 AMOTQ4VCS5 1084 aa11.13□□□□□ -0.63
SMAD4-206ENST00000588860 C8orf37Q96NL8 207 aa11.13□□□□□ -0.63
SMAD4-206ENST00000588860 API5Q9BZZ5 524 aaKnown RBP11.13□□□□□ -0.63
SMAD4-206ENST00000588860 CPDO75976 1380 aa11.13□□□□□ -0.63
SMAD4-206ENST00000588860 ABCC4O15439 1325 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 SOS2Q07890 1332 aaPredicted RBP11.12□□□□□ -0.63
SMAD4-206ENST00000588860 OVOS2A0A0G2JMS6 1433 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 CSB-PGBD3P0DP91 1061 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 TAF7Q15545 349 aaPredicted RBP11.12□□□□□ -0.63
SMAD4-206ENST00000588860 CHRNA2Q15822 529 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 AKAP4Q5JQC9 854 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 C1orf141Q5JVX7 400 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 RWDD1Q9H446 243 aaPredicted RBP11.12□□□□□ -0.63
SMAD4-206ENST00000588860 BABAM1Q9NWV8 329 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 NLRP2Q9NX02 1062 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 CEMIPQ8WUJ3 1361 aa11.12□□□□□ -0.63
SMAD4-206ENST00000588860 MEGF6O75095 1541 aa11.1□□□□□ -0.63
SMAD4-206ENST00000588860 LRP5O75197 1615 aa11.1□□□□□ -0.63
SMAD4-206ENST00000588860 AHDC1Q5TGY3 1603 aaPredicted RBP11.1□□□□□ -0.63
SMAD4-206ENST00000588860 PTPRCP08575 1304 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 C5P01031 1676 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 TATP17735 454 aaPredicted RBP11.09□□□□□ -0.63
SMAD4-206ENST00000588860 RGS3P49796 1198 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 MPRIPQ6WCQ1 1025 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 RAPGEF4Q8WZA2 1011 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 PHF12Q96QT6 1004 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 CHMP4BQ9H444 224 aaKnown RBP11.09□□□□□ -0.63
SMAD4-206ENST00000588860 LGR6Q9HBX8 967 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 ZBTB40Q9NUA8 1239 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 SHANK3Q9BYB0 1731 aa11.09□□□□□ -0.63
SMAD4-206ENST00000588860 SOS1Q07889 1333 aaPredicted RBP11.09□□□□□ -0.63
SMAD4-206ENST00000588860 RNMTO43148 476 aaKnown RBP11.08□□□□□ -0.64
SMAD4-206ENST00000588860 YY1P25490 414 aa11.08□□□□□ -0.64
SMAD4-206ENST00000588860 TEFQ10587 303 aa11.08□□□□□ -0.64
SMAD4-206ENST00000588860 STK31Q9BXU1 1019 aa11.08□□□□□ -0.64
SMAD4-206ENST00000588860 PRDM11Q9NQV5 511 aa11.08□□□□□ -0.64
SMAD4-206ENST00000588860 COL22A1Q8NFW1 1626 aaPredicted RBP11.08□□□□□ -0.64
SMAD4-206ENST00000588860 WNK3Q9BYP7 1800 aa11.07□□□□□ -0.64
SMAD4-206ENST00000588860 PDE4AP27815 886 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms