RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SYT17Q9BSW7 474 aa16.61■□□□□ 0.25
SS18-225ENST00000585121 KDM6AO15550 1401 aaPredicted RBP16.61■□□□□ 0.25
SS18-225ENST00000585121 LINC00116Q8NCU8 138 aa16.6■□□□□ 0.25
SS18-225ENST00000585121 QSER1Q2KHR3 1735 aa16.6■□□□□ 0.25
SS18-225ENST00000585121 PHF14O94880 888 aa16.6■□□□□ 0.25
SS18-225ENST00000585121 SSFA2P28290 1259 aa16.6■□□□□ 0.25
SS18-225ENST00000585121 PPP2R1AP30153 589 aa16.6■□□□□ 0.25
SS18-225ENST00000585121 MTHFSDQ2M296 383 aaKnown RBP16.6■□□□□ 0.25
SS18-225ENST00000585121 KLHL34Q8N239 644 aa16.6■□□□□ 0.25
SS18-225ENST00000585121 C5P01031 1676 aa16.59■□□□□ 0.25
SS18-225ENST00000585121 ITPK1Q13572 414 aa16.59■□□□□ 0.25
SS18-225ENST00000585121 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.58■□□□□ 0.24
SS18-225ENST00000585121 GNPATO15228 680 aa16.58■□□□□ 0.24
SS18-225ENST00000585121 RNMTO43148 476 aaKnown RBP16.58■□□□□ 0.24
SS18-225ENST00000585121 GAS2L2Q8NHY3 880 aa16.58■□□□□ 0.24
SS18-225ENST00000585121 SLC52A2Q9HAB3 445 aa16.58■□□□□ 0.24
SS18-225ENST00000585121 COL3A1P02461 1466 aaPredicted RBP16.57■□□□□ 0.24
SS18-225ENST00000585121 PTCD1O75127 700 aaKnown RBP16.57■□□□□ 0.24
SS18-225ENST00000585121 MSL1Q68DK7 614 aa16.57■□□□□ 0.24
SS18-225ENST00000585121 LGR6Q9HBX8 967 aa16.57■□□□□ 0.24
SS18-225ENST00000585121 RTCBQ9Y3I0 505 aaKnown RBP16.56■□□□□ 0.24
SS18-225ENST00000585121 C4BP0C0L5 1744 aa16.56■□□□□ 0.24
SS18-225ENST00000585121 MAP3K5Q99683 1374 aa16.56■□□□□ 0.24
SS18-225ENST00000585121 U2AF1L5P0DN76 240 aaPredicted RBP16.55■□□□□ 0.24
SS18-225ENST00000585121 U2AF1Q01081 240 aaKnown RBP eCLIP16.55■□□□□ 0.242e-6■■■■□ 21.7
SS18-225ENST00000585121 RC3H1Q5TC82 1133 aaKnown RBP16.55■□□□□ 0.24
SS18-225ENST00000585121 TUBGCP6Q96RT7 1819 aa16.55■□□□□ 0.24
SS18-225ENST00000585121 TRAPPC3LQ5T215 181 aa16.55■□□□□ 0.24
SS18-225ENST00000585121 SLC4A9Q96Q91 983 aa16.55■□□□□ 0.24
SS18-225ENST00000585121 TAF1LQ8IZX4 1826 aa16.54■□□□□ 0.24
SS18-225ENST00000585121 GNAT3A8MTJ3 354 aa16.54■□□□□ 0.24
SS18-225ENST00000585121 PRKAR2BP31323 418 aa16.53■□□□□ 0.24
SS18-225ENST00000585121 CNTNAP4Q9C0A0 1308 aa16.52■□□□□ 0.24
SS18-225ENST00000585121 FCHSD2O94868 740 aa16.52■□□□□ 0.24
SS18-225ENST00000585121 ADRA2BP18089 450 aa16.52■□□□□ 0.24
SS18-225ENST00000585121 TEFQ10587 303 aa16.52■□□□□ 0.24
SS18-225ENST00000585121 SMIM5Q71RC9 77 aa16.52■□□□□ 0.24
SS18-225ENST00000585121 AMIGO3Q86WK7 504 aa16.52■□□□□ 0.24
SS18-225ENST00000585121 RSPH6AQ9H0K4 717 aa16.52■□□□□ 0.24
SS18-225ENST00000585121 RPS6KA4O75676 772 aa16.51■□□□□ 0.23
SS18-225ENST00000585121 NEFMP07197 916 aa16.5■□□□□ 0.23
SS18-225ENST00000585121 RFC4P35249 363 aa16.5■□□□□ 0.23
SS18-225ENST00000585121 GPR162Q16538 588 aa16.5■□□□□ 0.23
SS18-225ENST00000585121 TTC5Q8N0Z6 440 aa16.5■□□□□ 0.23
SS18-225ENST00000585121 YY1P25490 414 aa16.5■□□□□ 0.23
SS18-225ENST00000585121 CRKLP46109 303 aaKnown RBP16.5■□□□□ 0.23
SS18-225ENST00000585121 DDX10Q13206 875 aaKnown RBP16.5■□□□□ 0.23
SS18-225ENST00000585121 SLC39A6Q13433 755 aa16.5■□□□□ 0.23
SS18-225ENST00000585121 RALBP1Q15311 655 aa16.49■□□□□ 0.23
SS18-225ENST00000585121 PELP1Q8IZL8 1130 aaKnown RBP16.49■□□□□ 0.23
SS18-225ENST00000585121 NLGN1Q8N2Q7 840 aa16.49■□□□□ 0.23
SS18-225ENST00000585121 RTF1Q92541 710 aaKnown RBP16.49■□□□□ 0.23
SS18-225ENST00000585121 ARHGEF1Q92888 912 aaKnown RBP16.49■□□□□ 0.23
SS18-225ENST00000585121 PHACTR3Q96KR7 559 aa16.49■□□□□ 0.23
SS18-225ENST00000585121 CD2APQ9Y5K6 639 aa16.49■□□□□ 0.23
SS18-225ENST00000585121 SCN11AQ9UI33 1791 aa16.49■□□□□ 0.23
SS18-225ENST00000585121 IL17REQ8NFR9 667 aa16.48■□□□□ 0.23
SS18-225ENST00000585121 MRC1P22897 1456 aa16.48■□□□□ 0.23
SS18-225ENST00000585121 ZNF831Q5JPB2 1677 aa16.48■□□□□ 0.23
SS18-225ENST00000585121 UBR3Q6ZT12 1888 aa16.48■□□□□ 0.23
SS18-225ENST00000585121 VSIG10Q8N0Z9 540 aa16.47■□□□□ 0.23
SS18-225ENST00000585121 COL24A1Q17RW2 1714 aa16.47■□□□□ 0.23
SS18-225ENST00000585121 ZEB1P37275 1124 aaPredicted RBP16.46■□□□□ 0.23
SS18-225ENST00000585121 DNAJC10Q8IXB1 793 aa16.46■□□□□ 0.23
SS18-225ENST00000585121 NLGN2Q8NFZ4 835 aa16.46■□□□□ 0.23
SS18-225ENST00000585121 PNNQ9H307 717 aaKnown RBP16.46■□□□□ 0.23
SS18-225ENST00000585121 CCDC87Q9NVE4 849 aa16.46■□□□□ 0.23
SS18-225ENST00000585121 STARD3NLO95772 234 aa16.45■□□□□ 0.22
SS18-225ENST00000585121 MMP10P09238 476 aa16.45■□□□□ 0.22
SS18-225ENST00000585121 BTBD11A6QL63 1104 aa16.44■□□□□ 0.22
SS18-225ENST00000585121 HTATSF1O43719 755 aaKnown RBP16.44■□□□□ 0.22
SS18-225ENST00000585121 CYP19A1P11511 503 aaPredicted RBP16.44■□□□□ 0.22
SS18-225ENST00000585121 INTS5Q6P9B9 1019 aaKnown RBP16.44■□□□□ 0.22
SS18-225ENST00000585121 ZNF790Q6PG37 636 aa16.44■□□□□ 0.22
SS18-225ENST00000585121 TEX13AQ9BXU3 409 aaPredicted RBP16.44■□□□□ 0.22
SS18-225ENST00000585121 GRIN3BO60391 1043 aa16.43■□□□□ 0.22
SS18-225ENST00000585121 GYS1P13807 737 aa16.43■□□□□ 0.22
SS18-225ENST00000585121 PARP3Q9Y6F1 533 aa16.43■□□□□ 0.22
SS18-225ENST00000585121 ZPR1O75312 459 aa16.42■□□□□ 0.22
SS18-225ENST00000585121 FMNL2Q96PY5 1086 aa16.42■□□□□ 0.22
SS18-225ENST00000585121 CEMIPQ8WUJ3 1361 aa16.42■□□□□ 0.22
SS18-225ENST00000585121 ADAMTS7Q9UKP4 1686 aa16.42■□□□□ 0.22
SS18-225ENST00000585121 COL5A3P25940 1745 aaPredicted RBP16.41■□□□□ 0.22
SS18-225ENST00000585121 UTRNP46939 3433 aa16.41■□□□□ 0.22
SS18-225ENST00000585121 MAPK8IP3Q9UPT6 1336 aa16.4■□□□□ 0.22
SS18-225ENST00000585121 MCM10Q7L590 875 aa16.4■□□□□ 0.22
SS18-225ENST00000585121 ZNF496Q96IT1 587 aaPredicted RBP16.4■□□□□ 0.22
SS18-225ENST00000585121 KCPQ6ZWJ8 1503 aa16.4■□□□□ 0.22
SS18-225ENST00000585121 SOS1Q07889 1333 aaPredicted RBP16.4■□□□□ 0.22
SS18-225ENST00000585121 USP42Q9H9J4 1324 aaKnown RBP16.4■□□□□ 0.22
SS18-225ENST00000585121 NPM2Q86SE8 214 aaKnown RBP16.4■□□□□ 0.22
SS18-225ENST00000585121 SRP68Q9UHB9 627 aaKnown RBP16.4■□□□□ 0.22
SS18-225ENST00000585121 HEG1Q9ULI3 1381 aa16.39■□□□□ 0.21
SS18-225ENST00000585121 MYBBP1AQ9BQG0 1328 aaKnown RBP16.39■□□□□ 0.21
SS18-225ENST00000585121 CANXP27824 592 aaKnown RBP16.39■□□□□ 0.21
SS18-225ENST00000585121 ZBTB1Q9Y2K1 713 aa16.39■□□□□ 0.21
SS18-225ENST00000585121 MYH14Q7Z406 1995 aaKnown RBP16.38■□□□□ 0.21
SS18-225ENST00000585121 A0A087WZG4 1122 aa16.38■□□□□ 0.21
SS18-225ENST00000585121 TJP1Q07157 1748 aa16.38■□□□□ 0.21
SS18-225ENST00000585121 CICQ96RK0 1608 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms