RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 NUTM2AQ8IVF1 878 aaPredicted RBP28.59■■■□□ 2.17
CCDC47-204ENST00000582252 TOM1L2Q6ZVM7 507 aa28.58■■■□□ 2.17
CCDC47-204ENST00000582252 NRAPQ86VF7 1730 aa28.57■■■□□ 2.16
CCDC47-204ENST00000582252 NPM2Q86SE8 214 aaKnown RBP28.57■■■□□ 2.16
CCDC47-204ENST00000582252 RAPGEF4Q8WZA2 1011 aa28.57■■■□□ 2.16
CCDC47-204ENST00000582252 STRN4Q9NRL3 753 aa28.57■■■□□ 2.16
CCDC47-204ENST00000582252 PARP4Q9UKK3 1724 aaKnown RBP28.57■■■□□ 2.16
CCDC47-204ENST00000582252 TAF7Q15545 349 aaPredicted RBP28.56■■■□□ 2.16
CCDC47-204ENST00000582252 KRT24Q2M2I5 525 aa28.56■■■□□ 2.16
CCDC47-204ENST00000582252 AMOTQ4VCS5 1084 aa28.56■■■□□ 2.16
CCDC47-204ENST00000582252 SMC5Q8IY18 1101 aa28.56■■■□□ 2.16
CCDC47-204ENST00000582252 PLEKHO1Q53GL0 409 aaPredicted RBP28.55■■■□□ 2.16
CCDC47-204ENST00000582252 CARD10Q9BWT7 1032 aa28.55■■■□□ 2.16
CCDC47-204ENST00000582252 CACNA1FO60840 1977 aa28.55■■■□□ 2.16
CCDC47-204ENST00000582252 INTS3Q68E01 1043 aaKnown RBP28.54■■■□□ 2.16
CCDC47-204ENST00000582252 MIS18AQ9NYP9 233 aa28.54■■■□□ 2.16
CCDC47-204ENST00000582252 NOP58Q9Y2X3 529 aaKnown RBP28.54■■■□□ 2.16
CCDC47-204ENST00000582252 PKD1L3Q7Z443 1732 aa28.53■■■□□ 2.16
CCDC47-204ENST00000582252 TATP17735 454 aaPredicted RBP28.53■■■□□ 2.16
CCDC47-204ENST00000582252 IL17REQ8NFR9 667 aa28.53■■■□□ 2.16
CCDC47-204ENST00000582252 MEGF6O75095 1541 aa28.53■■■□□ 2.16
CCDC47-204ENST00000582252 LARP1Q6PKG0 1096 aaKnown RBP28.52■■■□□ 2.16
CCDC47-204ENST00000582252 DDRGK1Q96HY6 314 aa28.52■■■□□ 2.16
CCDC47-204ENST00000582252 ANP32EQ9BTT0 268 aa28.52■■■□□ 2.16
CCDC47-204ENST00000582252 CEMIPQ8WUJ3 1361 aa28.52■■■□□ 2.16
CCDC47-204ENST00000582252 STK31Q9BXU1 1019 aa28.52■■■□□ 2.16
CCDC47-204ENST00000582252 AKAP4Q5JQC9 854 aa28.51■■■□□ 2.15
CCDC47-204ENST00000582252 ZBTB47Q9UFB7 747 aaPredicted RBP28.51■■■□□ 2.15
CCDC47-204ENST00000582252 SLIT2O94813 1529 aa28.5■■■□□ 2.15
CCDC47-204ENST00000582252 RGS12O14924 1447 aa28.5■■■□□ 2.15
CCDC47-204ENST00000582252 SLC4A2P04920 1241 aa28.49■■■□□ 2.15
CCDC47-204ENST00000582252 CCDC30Q5VVM6 783 aa28.49■■■□□ 2.15
CCDC47-204ENST00000582252 GCC1Q96CN9 775 aa28.49■■■□□ 2.15
CCDC47-204ENST00000582252 CHMP4AQ9BY43 222 aa28.49■■■□□ 2.15
CCDC47-204ENST00000582252 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.49■■■□□ 2.152e-8■■■□□ 16.9
CCDC47-204ENST00000582252 OVOS2A0A0G2JMS6 1433 aa28.49■■■□□ 2.15
CCDC47-204ENST00000582252 LRP6O75581 1613 aa28.47■■■□□ 2.15
CCDC47-204ENST00000582252 ZNF530Q6P9A1 599 aaPredicted RBP28.47■■■□□ 2.15
CCDC47-204ENST00000582252 WNK3Q9BYP7 1800 aa28.47■■■□□ 2.15
CCDC47-204ENST00000582252 KDM3BQ7LBC6 1761 aa28.46■■■□□ 2.15
CCDC47-204ENST00000582252 C1orf141Q5JVX7 400 aa28.46■■■□□ 2.15
CCDC47-204ENST00000582252 SPG7Q9UQ90 795 aa28.46■■■□□ 2.15
CCDC47-204ENST00000582252 NUCB1Q02818 461 aa28.43■■■□□ 2.14
CCDC47-204ENST00000582252 IL2RBP14784 551 aa28.43■■■□□ 2.14
CCDC47-204ENST00000582252 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.42■■■□□ 2.14
CCDC47-204ENST00000582252 CCT4P50991 539 aaKnown RBP28.42■■■□□ 2.14
CCDC47-204ENST00000582252 TEFQ10587 303 aa28.42■■■□□ 2.14
CCDC47-204ENST00000582252 C8orf37Q96NL8 207 aa28.42■■■□□ 2.14
CCDC47-204ENST00000582252 NGLY1Q96IV0 654 aa28.41■■■□□ 2.14
CCDC47-204ENST00000582252 HOXB7P09629 217 aa28.4■■■□□ 2.14
CCDC47-204ENST00000582252 ADAMTS7Q9UKP4 1686 aa28.4■■■□□ 2.14
CCDC47-204ENST00000582252 C1orf115Q9H7X2 142 aa28.4■■■□□ 2.14
CCDC47-204ENST00000582252 SCN11AQ9UI33 1791 aa28.39■■■□□ 2.14
CCDC47-204ENST00000582252 USP35Q9P2H5 1018 aa28.39■■■□□ 2.14
CCDC47-204ENST00000582252 SHANK3Q9BYB0 1731 aa28.39■■■□□ 2.13
CCDC47-204ENST00000582252 N4BP2Q86UW6 1770 aaPredicted RBP28.38■■■□□ 2.13
CCDC47-204ENST00000582252 CHD1LQ86WJ1 897 aa28.38■■■□□ 2.13
CCDC47-204ENST00000582252 UNC5CLQ8IV45 518 aa28.38■■■□□ 2.13
CCDC47-204ENST00000582252 RPAP2Q8IXW5 612 aaPredicted RBP28.38■■■□□ 2.13
CCDC47-204ENST00000582252 FNBP4Q8N3X1 1017 aaPredicted RBP28.38■■■□□ 2.13
CCDC47-204ENST00000582252 UPF2Q9HAU5 1272 aaKnown RBP28.37■■■□□ 2.13
CCDC47-204ENST00000582252 DISP2A7MBM2 1401 aa28.36■■■□□ 2.13
CCDC47-204ENST00000582252 MEX3CQ5U5Q3 659 aaKnown RBP28.36■■■□□ 2.13
CCDC47-204ENST00000582252 IFNL2Q8IZJ0 200 aa28.36■■■□□ 2.13
CCDC47-204ENST00000582252 THRAP3Q9Y2W1 955 aaKnown RBP28.36■■■□□ 2.13
CCDC47-204ENST00000582252 SPATA31A1Q5TZJ5 1347 aa28.36■■■□□ 2.13
CCDC47-204ENST00000582252 BCL9LQ86UU0 1499 aa28.35■■■□□ 2.13
CCDC47-204ENST00000582252 RNMTO43148 476 aaKnown RBP28.35■■■□□ 2.13
CCDC47-204ENST00000582252 FLIIQ13045 1269 aa28.35■■■□□ 2.13
CCDC47-204ENST00000582252 ZCRB1Q8TBF4 217 aaKnown RBP28.35■■■□□ 2.13
CCDC47-204ENST00000582252 LGR6Q9HBX8 967 aa28.35■■■□□ 2.13
CCDC47-204ENST00000582252 PCDH11XQ9BZA7 1347 aa28.35■■■□□ 2.13
CCDC47-204ENST00000582252 PCDH11YQ9BZA8 1340 aa28.35■■■□□ 2.13
CCDC47-204ENST00000582252 PXDNLA1KZ92 1463 aa28.35■■■□□ 2.13
CCDC47-204ENST00000582252 PHKG2P15735 406 aa28.35■■■□□ 2.13
CCDC47-204ENST00000582252 HDGFL1Q5TGJ6 251 aa28.34■■■□□ 2.13
CCDC47-204ENST00000582252 G2E3Q7L622 706 aa28.34■■■□□ 2.13
CCDC47-204ENST00000582252 ANKRD44Q8N8A2 993 aa28.34■■■□□ 2.13
CCDC47-204ENST00000582252 SPATA31A5Q5VU36 1347 aa28.34■■■□□ 2.13
CCDC47-204ENST00000582252 SPATA31A7Q8IWB4 1347 aa28.34■■■□□ 2.13
CCDC47-204ENST00000582252 BTBD11A6QL63 1104 aa28.33■■■□□ 2.13
CCDC47-204ENST00000582252 EIF4A1P60842 406 aaKnown RBP28.33■■■□□ 2.13
CCDC47-204ENST00000582252 SIPA1L3O60292 1781 aaPredicted RBP28.33■■■□□ 2.13
CCDC47-204ENST00000582252 HSP90AB1P08238 724 aaKnown RBP28.32■■■□□ 2.12
CCDC47-204ENST00000582252 FKBP5Q13451 457 aaPredicted RBP28.32■■■□□ 2.12
CCDC47-204ENST00000582252 SIRT2Q8IXJ6 389 aa28.32■■■□□ 2.12
CCDC47-204ENST00000582252 CDCA7Q9BWT1 371 aaPredicted RBP28.32■■■□□ 2.12
CCDC47-204ENST00000582252 CYP27B1O15528 508 aa28.32■■■□□ 2.12
CCDC47-204ENST00000582252 ANKRD45Q5TZF3 282 aa28.32■■■□□ 2.12
CCDC47-204ENST00000582252 MPRIPQ6WCQ1 1025 aa28.32■■■□□ 2.12
CCDC47-204ENST00000582252 LNPKQ9C0E8 428 aa28.32■■■□□ 2.12
CCDC47-204ENST00000582252 ATP10DQ9P241 1426 aa28.31■■■□□ 2.12
CCDC47-204ENST00000582252 SLC4A10Q6U841 1118 aa28.31■■■□□ 2.12
CCDC47-204ENST00000582252 VPS72Q15906 364 aa28.29■■■□□ 2.12
CCDC47-204ENST00000582252 CCDC9Q9Y3X0 531 aaKnown RBP28.29■■■□□ 2.12
CCDC47-204ENST00000582252 USP21Q9UK80 565 aa28.29■■■□□ 2.12
CCDC47-204ENST00000582252 HMMRO75330 724 aa28.28■■■□□ 2.12
CCDC47-204ENST00000582252 DCAF5Q96JK2 942 aa28.28■■■□□ 2.12
CCDC47-204ENST00000582252 DCTPP1Q9H773 170 aa28.28■■■□□ 2.12
CCDC47-204ENST00000582252 DAXXQ9UER7 740 aaPredicted RBP28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms