RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 RGPD3A6NKT7 1758 aaPredicted RBP11.89□□□□□ -0.51
SS18-220ENST00000582092 RGPD4Q7Z3J3 1758 aa11.89□□□□□ -0.51
SS18-220ENST00000582092 PLSCR1O15162 318 aa11.88□□□□□ -0.51
SS18-220ENST00000582092 ZKSCAN2Q63HK3 967 aa11.88□□□□□ -0.51
SS18-220ENST00000582092 CAMKK2Q96RR4 588 aa11.88□□□□□ -0.51
SS18-220ENST00000582092 TATP17735 454 aaPredicted RBP11.87□□□□□ -0.51
SS18-220ENST00000582092 AAMPQ13685 434 aa11.87□□□□□ -0.51
SS18-220ENST00000582092 ZCRB1Q8TBF4 217 aaKnown RBP11.87□□□□□ -0.51
SS18-220ENST00000582092 DDX54Q8TDD1 881 aaKnown RBP11.87□□□□□ -0.51
SS18-220ENST00000582092 CFAP44Q96MT7 982 aa11.87□□□□□ -0.51
SS18-220ENST00000582092 HTATSF1O43719 755 aaKnown RBP11.86□□□□□ -0.51
SS18-220ENST00000582092 ALDH1L2Q3SY69 923 aa11.86□□□□□ -0.51
SS18-220ENST00000582092 NBPF6Q5VWK0 638 aa11.86□□□□□ -0.51
SS18-220ENST00000582092 NBPF4Q96M43 638 aa11.86□□□□□ -0.51
SS18-220ENST00000582092 BCL2L13Q9BXK5 485 aa11.86□□□□□ -0.51
SS18-220ENST00000582092 RREB1Q92766 1687 aa11.86□□□□□ -0.51
SS18-220ENST00000582092 IGSF1Q8N6C5 1336 aa11.86□□□□□ -0.51
SS18-220ENST00000582092 KIF16BQ96L93 1317 aa11.86□□□□□ -0.51
SS18-220ENST00000582092 NHSQ6T4R5 1651 aa11.85□□□□□ -0.51
SS18-220ENST00000582092 HMGB2P26583 209 aaKnown RBP11.85□□□□□ -0.51
SS18-220ENST00000582092 PLEKHO1Q53GL0 409 aaPredicted RBP11.85□□□□□ -0.51
SS18-220ENST00000582092 C20orf194Q5TEA3 1177 aa11.85□□□□□ -0.51
SS18-220ENST00000582092 THUMPD2Q9BTF0 503 aaKnown RBP11.85□□□□□ -0.51
SS18-220ENST00000582092 CHMP4BQ9H444 224 aaKnown RBP11.85□□□□□ -0.51
SS18-220ENST00000582092 NUP188Q5SRE5 1749 aa11.84□□□□□ -0.51
SS18-220ENST00000582092 GNAT3A8MTJ3 354 aa11.84□□□□□ -0.51
SS18-220ENST00000582092 DCTN1Q14203 1278 aa11.84□□□□□ -0.51
SS18-220ENST00000582092 MTHFSDQ2M296 383 aaKnown RBP11.84□□□□□ -0.51
SS18-220ENST00000582092 DZIP1LQ8IYY4 767 aaKnown RBP11.84□□□□□ -0.51
SS18-220ENST00000582092 MBIPQ9NS73 344 aa11.84□□□□□ -0.51
SS18-220ENST00000582092 PSDA5PKW4 1024 aaPredicted RBP11.83□□□□□ -0.52
SS18-220ENST00000582092 TWISTNBQ3B726 338 aaPredicted RBP11.83□□□□□ -0.52
SS18-220ENST00000582092 MCM10Q7L590 875 aa11.83□□□□□ -0.52
SS18-220ENST00000582092 PANK1Q8TE04 598 aa11.83□□□□□ -0.52
SS18-220ENST00000582092 ACSBG1Q96GR2 724 aa11.83□□□□□ -0.52
SS18-220ENST00000582092 COG6Q9Y2V7 657 aa11.83□□□□□ -0.52
SS18-220ENST00000582092 PCDH11XQ9BZA7 1347 aa11.83□□□□□ -0.52
SS18-220ENST00000582092 PCDH11YQ9BZA8 1340 aa11.83□□□□□ -0.52
SS18-220ENST00000582092 BTAF1O14981 1849 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 R3HDM1Q15032 1099 aaKnown RBP11.82□□□□□ -0.52
SS18-220ENST00000582092 AMOTQ4VCS5 1084 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 C1orf141Q5JVX7 400 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 USHBP1Q8N6Y0 703 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 SSH1Q8WYL5 1049 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 CLUAP1Q96AJ1 413 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 SYTL4Q96C24 671 aaPredicted RBP11.82□□□□□ -0.52
SS18-220ENST00000582092 TSPYL4Q9UJ04 414 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 SPG7Q9UQ90 795 aa11.82□□□□□ -0.52
SS18-220ENST00000582092 KDRP35968 1356 aa11.81□□□□□ -0.52
SS18-220ENST00000582092 ELL2O00472 640 aaPredicted RBP11.81□□□□□ -0.52
SS18-220ENST00000582092 ZNF853P0CG23 659 aa11.81□□□□□ -0.52
SS18-220ENST00000582092 TXNRD1Q16881 649 aa11.81□□□□□ -0.52
SS18-220ENST00000582092 CENPQQ7L2Z9 268 aaPredicted RBP11.81□□□□□ -0.52
SS18-220ENST00000582092 CHMP4AQ9BY43 222 aa11.81□□□□□ -0.52
SS18-220ENST00000582092 NOB1Q9ULX3 412 aaKnown RBP11.81□□□□□ -0.52
SS18-220ENST00000582092 MEGF6O75095 1541 aa11.81□□□□□ -0.52
SS18-220ENST00000582092 CHL1O00533 1208 aa11.8□□□□□ -0.52
SS18-220ENST00000582092 KCNQ2O43526 872 aa11.8□□□□□ -0.52
SS18-220ENST00000582092 ATF7IPQ6VMQ6 1270 aa11.8□□□□□ -0.52
SS18-220ENST00000582092 DOT1LQ8TEK3 1739 aa11.8□□□□□ -0.52
SS18-220ENST00000582092 SHANK3Q9BYB0 1731 aa11.8□□□□□ -0.52
SS18-220ENST00000582092 VAMP4O75379 141 aa11.79□□□□□ -0.52
SS18-220ENST00000582092 ZNF530Q6P9A1 599 aaPredicted RBP11.79□□□□□ -0.52
SS18-220ENST00000582092 ITPRIPQ8IWB1 547 aa11.79□□□□□ -0.52
SS18-220ENST00000582092 TSHZ2Q9NRE2 1034 aa11.79□□□□□ -0.52
SS18-220ENST00000582092 STK32BQ9NY57 414 aa11.79□□□□□ -0.52
SS18-220ENST00000582092 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.79□□□□□ -0.52
SS18-220ENST00000582092 DDX19BQ9UMR2 479 aa11.79□□□□□ -0.52
SS18-220ENST00000582092 MAP3K5Q99683 1374 aa11.79□□□□□ -0.52
SS18-220ENST00000582092 PLEKHG2Q9H7P9 1386 aa11.79□□□□□ -0.52
SS18-220ENST00000582092 LRP5O75197 1615 aa11.78□□□□□ -0.52
SS18-220ENST00000582092 DLG5Q8TDM6 1919 aa11.78□□□□□ -0.52
SS18-220ENST00000582092 PKD1L3Q7Z443 1732 aa11.78□□□□□ -0.52
SS18-220ENST00000582092 TCERG1O14776 1098 aaKnown RBP11.78□□□□□ -0.52
SS18-220ENST00000582092 TAF7Q15545 349 aaPredicted RBP11.78□□□□□ -0.52
SS18-220ENST00000582092 API5Q9BZZ5 524 aaKnown RBP11.78□□□□□ -0.52
SS18-220ENST00000582092 RWDD1Q9H446 243 aaPredicted RBP11.78□□□□□ -0.52
SS18-220ENST00000582092 BABAM1Q9NWV8 329 aa11.78□□□□□ -0.52
SS18-220ENST00000582092 PRIM1P49642 420 aaKnown RBP11.77□□□□□ -0.53
SS18-220ENST00000582092 TEFQ10587 303 aa11.77□□□□□ -0.53
SS18-220ENST00000582092 MVPQ14764 893 aaKnown RBP11.77□□□□□ -0.53
SS18-220ENST00000582092 SLC27A3Q5K4L6 730 aa11.77□□□□□ -0.53
SS18-220ENST00000582092 PTF1AQ7RTS3 328 aa11.77□□□□□ -0.53
SS18-220ENST00000582092 C8orf58Q8NAV2 365 aa11.77□□□□□ -0.53
SS18-220ENST00000582092 ARHGAP45Q92619 1136 aa11.77□□□□□ -0.53
SS18-220ENST00000582092 STK31Q9BXU1 1019 aa11.77□□□□□ -0.53
SS18-220ENST00000582092 NCAPD2Q15021 1401 aa11.77□□□□□ -0.53
SS18-220ENST00000582092 BRPF1P55201 1214 aaPredicted RBP11.76□□□□□ -0.53
SS18-220ENST00000582092 AKAP4Q5JQC9 854 aa11.76□□□□□ -0.53
SS18-220ENST00000582092 IFNL2Q8IZJ0 200 aa11.76□□□□□ -0.53
SS18-220ENST00000582092 MRPL50Q8N5N7 158 aaKnown RBP11.76□□□□□ -0.53
SS18-220ENST00000582092 ITGB4P16144 1822 aa11.76□□□□□ -0.53
SS18-220ENST00000582092 HSP90AB1P08238 724 aaKnown RBP11.75□□□□□ -0.53
SS18-220ENST00000582092 TRIM27P14373 513 aa11.75□□□□□ -0.53
SS18-220ENST00000582092 TSPYL6Q8N831 410 aa11.75□□□□□ -0.53
SS18-220ENST00000582092 SPON1Q9HCB6 807 aa11.75□□□□□ -0.53
SS18-220ENST00000582092 MIS18AQ9NYP9 233 aa11.75□□□□□ -0.53
SS18-220ENST00000582092 SLC15A2Q16348 729 aa11.74□□□□□ -0.53
SS18-220ENST00000582092 CCDC30Q5VVM6 783 aa11.74□□□□□ -0.53
SS18-220ENST00000582092 PROM2Q8N271 834 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms