RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 JAKMIP1Q96N16 626 aaKnown RBP13.95□□□□□ -0.18
CDH1-210ENST00000566612 BOLA2Q9H3K6 86 aa13.95□□□□□ -0.18
CDH1-210ENST00000566612 PTCD1O75127 700 aaKnown RBP13.94□□□□□ -0.18
CDH1-210ENST00000566612 MAP3K2Q9Y2U5 619 aa13.94□□□□□ -0.18
CDH1-210ENST00000566612 HOXC9P31274 260 aa13.94□□□□□ -0.18
CDH1-210ENST00000566612 MSH6P52701 1360 aa13.94□□□□□ -0.18
CDH1-210ENST00000566612 FAM43AQ8N2R8 423 aa13.94□□□□□ -0.18
CDH1-210ENST00000566612 ANKRD24Q8TF21 1146 aa13.94□□□□□ -0.18
CDH1-210ENST00000566612 CCDC85AQ96PX6 553 aaPredicted RBP13.94□□□□□ -0.18
CDH1-210ENST00000566612 TBX22Q9Y458 520 aa13.94□□□□□ -0.18
CDH1-210ENST00000566612 ARAP3Q8WWN8 1544 aa13.94□□□□□ -0.18
CDH1-210ENST00000566612 APPP05067 770 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 SF3A1Q15459 793 aaKnown RBP13.93□□□□□ -0.18
CDH1-210ENST00000566612 CHRNA2Q15822 529 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 KRT28Q7Z3Y7 464 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 PANK2Q9BZ23 570 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 PRDM11Q9NQV5 511 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 SLC39A6Q13433 755 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 CYP46A1Q9Y6A2 500 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 BAG4O95429 457 aaKnown RBP13.93□□□□□ -0.18
CDH1-210ENST00000566612 CASTP20810 708 aaKnown RBP13.93□□□□□ -0.18
CDH1-210ENST00000566612 WASHC4Q2M389 1173 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 AMOTQ4VCS5 1084 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 BICD2Q8TD16 824 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 PHF23Q9BUL5 403 aaPredicted RBP13.93□□□□□ -0.18
CDH1-210ENST00000566612 GDPD2Q9HCC8 539 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 HECW2Q9P2P5 1572 aa13.93□□□□□ -0.18
CDH1-210ENST00000566612 TMEM2Q9UHN6 1383 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 PRR36Q9H6K5 1346 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 FAM177BA6PVY3 158 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 RAB11FIP3O75154 756 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 PIP4K2AP48426 406 aaPredicted RBP13.92□□□□□ -0.18
CDH1-210ENST00000566612 PRPF40BQ6NWY9 871 aaKnown RBP13.92□□□□□ -0.18
CDH1-210ENST00000566612 MYD88Q99836 296 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 GLRX3O76003 335 aaKnown RBP13.92□□□□□ -0.18
CDH1-210ENST00000566612 MBD3O95983 291 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 ATP8B2P98198 1209 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 CHAF1AQ13111 956 aaPredicted RBP13.92□□□□□ -0.18
CDH1-210ENST00000566612 RHPN1Q8TCX5 695 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 ABCA6Q8N139 1617 aa13.92□□□□□ -0.18
CDH1-210ENST00000566612 PLEKHG3A1L390 1219 aa13.91□□□□□ -0.18
CDH1-210ENST00000566612 SNX21Q969T3 373 aa13.91□□□□□ -0.18
CDH1-210ENST00000566612 PSMA5P28066 241 aa13.91□□□□□ -0.18
CDH1-210ENST00000566612 PIK3R4Q99570 1358 aa13.91□□□□□ -0.18
CDH1-210ENST00000566612 SYCE3A1L190 88 aa13.91□□□□□ -0.18
CDH1-210ENST00000566612 LGR6Q9HBX8 967 aa13.91□□□□□ -0.18
CDH1-210ENST00000566612 POLR1AO95602 1720 aaPredicted RBP13.9□□□□□ -0.18
CDH1-210ENST00000566612 XRCC6P12956 609 aaKnown RBP eCLIP13.9□□□□□ -0.18
CDH1-210ENST00000566612 GTF2E1P29083 439 aaPredicted RBP13.9□□□□□ -0.18
CDH1-210ENST00000566612 KIF3AQ9Y496 699 aa13.9□□□□□ -0.18
CDH1-210ENST00000566612 CLASP1Q7Z460 1538 aa13.9□□□□□ -0.18
CDH1-210ENST00000566612 RBM25P49756 843 aaKnown RBP13.9□□□□□ -0.18
CDH1-210ENST00000566612 ZGPATQ8N5A5 531 aaKnown RBP13.9□□□□□ -0.18
CDH1-210ENST00000566612 FBXW7Q969H0 707 aa13.9□□□□□ -0.18
CDH1-210ENST00000566612 PDRG1Q9NUG6 133 aa13.9□□□□□ -0.18
CDH1-210ENST00000566612 WDR33Q9C0J8 1336 aaKnown RBP13.9□□□□□ -0.18
CDH1-210ENST00000566612 ATP5J2-PTCD1G3V325 749 aa13.9□□□□□ -0.18
CDH1-210ENST00000566612 FERMT3Q86UX7 667 aa13.9□□□□□ -0.18
CDH1-210ENST00000566612 PA2G4Q9UQ80 394 aaKnown RBP13.9□□□□□ -0.18
CDH1-210ENST00000566612 CCDC83Q8IWF9 413 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 PNMA6EA0A0J9YXQ4 647 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 KDM4AO75164 1064 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 CEBPZQ03701 1054 aaKnown RBP13.89□□□□□ -0.19
CDH1-210ENST00000566612 CABLES1Q8TDN4 633 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 USP26Q9BXU7 913 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 ABCC4O15439 1325 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 TMX3Q96JJ7 454 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 ESYT1Q9BSJ8 1104 aa13.89□□□□□ -0.19
CDH1-210ENST00000566612 CWF19L2Q2TBE0 894 aaKnown RBP13.88□□□□□ -0.19
CDH1-210ENST00000566612 LARP1Q6PKG0 1096 aaKnown RBP13.88□□□□□ -0.19
CDH1-210ENST00000566612 ORAI2Q96SN7 254 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 ROBO2Q9HCK4 1378 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 GOLGA6L6A8MZA4 724 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 GCP02774 474 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 RBM27Q9P2N5 1060 aaKnown RBP13.88□□□□□ -0.19
CDH1-210ENST00000566612 ESPNB1AK53 854 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 GSPT1P15170 499 aaKnown RBP13.88□□□□□ -0.19
CDH1-210ENST00000566612 LARP1BQ659C4 914 aaKnown RBP13.88□□□□□ -0.19
CDH1-210ENST00000566612 BLOC1S2Q6QNY1 142 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 HIP1O00291 1037 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 CPLX1O14810 134 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 SIRT2Q8IXJ6 389 aa13.88□□□□□ -0.19
CDH1-210ENST00000566612 ECHDC1Q9NTX5 307 aa13.87□□□□□ -0.19
CDH1-210ENST00000566612 USP19O94966 1318 aa13.87□□□□□ -0.19
CDH1-210ENST00000566612 HYPKQ9NX55 129 aa13.87□□□□□ -0.19
CDH1-210ENST00000566612 TSPY26PQ9H489 355 aa13.87□□□□□ -0.19
CDH1-210ENST00000566612 MAP3K5Q99683 1374 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 CEP152O94986 1710 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 SBNO1A3KN83 1393 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 ABCA9Q8IUA7 1624 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 FKBP4Q02790 459 aaKnown RBP eCLIP13.86□□□□□ -0.19
CDH1-210ENST00000566612 NBPF6Q5VWK0 638 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 IL17REQ8NFR9 667 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 NBPF4Q96M43 638 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 CFAP74Q9C0B2 1584 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 A0A087WZG4 1122 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 CCDC173Q0VFZ6 552 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 UBE3BQ7Z3V4 1068 aa13.86□□□□□ -0.19
CDH1-210ENST00000566612 ISY1Q9ULR0 285 aaKnown RBP13.86□□□□□ -0.19
CDH1-210ENST00000566612 TSPOAP1O95153 1857 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms