RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 DLG5Q8TDM6 1919 aa16.49■□□□□ 0.23
VPS4A-204ENST00000566354 DDX11L8A8MPP1 907 aa16.48■□□□□ 0.23
VPS4A-204ENST00000566354 XRCC6P12956 609 aaKnown RBP eCLIP16.48■□□□□ 0.23
VPS4A-204ENST00000566354 CALD1Q05682 793 aaKnown RBP16.48■□□□□ 0.23
VPS4A-204ENST00000566354 GCC1Q96CN9 775 aa16.48■□□□□ 0.23
VPS4A-204ENST00000566354 ZBTB22O15209 634 aa16.48■□□□□ 0.23
VPS4A-204ENST00000566354 CERKQ8TCT0 537 aa16.48■□□□□ 0.23
VPS4A-204ENST00000566354 ERBB3P21860 1342 aa16.47■□□□□ 0.23
VPS4A-204ENST00000566354 ZBTB7BO15156 539 aaPredicted RBP16.47■□□□□ 0.23
VPS4A-204ENST00000566354 DDIT3P35638 169 aa16.47■□□□□ 0.23
VPS4A-204ENST00000566354 COL16A1Q07092 1604 aaPredicted RBP16.47■□□□□ 0.23
VPS4A-204ENST00000566354 PRDM11Q9NQV5 511 aa16.47■□□□□ 0.23
VPS4A-204ENST00000566354 GZF1Q9H116 711 aaPredicted RBP16.46■□□□□ 0.23
VPS4A-204ENST00000566354 CIZ1Q9ULV3 898 aaPredicted RBP16.46■□□□□ 0.23
VPS4A-204ENST00000566354 VAMP4O75379 141 aa16.45■□□□□ 0.22
VPS4A-204ENST00000566354 MRPL50Q8N5N7 158 aaKnown RBP16.45■□□□□ 0.22
VPS4A-204ENST00000566354 THUMPD2Q9BTF0 503 aaKnown RBP16.45■□□□□ 0.22
VPS4A-204ENST00000566354 FAM83GA6ND36 823 aa16.44■□□□□ 0.22
VPS4A-204ENST00000566354 GNAI1P63096 354 aa16.44■□□□□ 0.22
VPS4A-204ENST00000566354 MTHFSDQ2M296 383 aaKnown RBP16.44■□□□□ 0.22
VPS4A-204ENST00000566354 ANKRD45Q5TZF3 282 aa16.44■□□□□ 0.22
VPS4A-204ENST00000566354 ISY1Q9ULR0 285 aaKnown RBP16.44■□□□□ 0.22
VPS4A-204ENST00000566354 MRE11P49959 708 aa16.44■□□□□ 0.22
VPS4A-204ENST00000566354 IFT57Q9NWB7 429 aa16.44■□□□□ 0.22
VPS4A-204ENST00000566354 CAMTA1Q9Y6Y1 1673 aa16.43■□□□□ 0.22
VPS4A-204ENST00000566354 TULP1O00294 542 aaPredicted RBP16.43■□□□□ 0.22
VPS4A-204ENST00000566354 ABCC6O95255 1503 aa16.43■□□□□ 0.22
VPS4A-204ENST00000566354 DCTN1Q14203 1278 aa16.42■□□□□ 0.22
VPS4A-204ENST00000566354 RRAGDQ9NQL2 400 aaPredicted RBP16.42■□□□□ 0.22
VPS4A-204ENST00000566354 COL22A1Q8NFW1 1626 aaPredicted RBP16.42■□□□□ 0.22
VPS4A-204ENST00000566354 LMO7Q8WWI1 1683 aa16.42■□□□□ 0.22
VPS4A-204ENST00000566354 CSB-PGBD3P0DP91 1061 aa16.42■□□□□ 0.22
VPS4A-204ENST00000566354 NLRP2Q9NX02 1062 aa16.42■□□□□ 0.22
VPS4A-204ENST00000566354 NCAPD2Q15021 1401 aa16.42■□□□□ 0.22
VPS4A-204ENST00000566354 HSP90AB1P08238 724 aaKnown RBP16.41■□□□□ 0.22
VPS4A-204ENST00000566354 ZNF853P0CG23 659 aa16.41■□□□□ 0.22
VPS4A-204ENST00000566354 GBP4Q96PP9 640 aa16.4■□□□□ 0.22
VPS4A-204ENST00000566354 KIF2CQ99661 725 aa16.4■□□□□ 0.22
VPS4A-204ENST00000566354 ABCC4O15439 1325 aa16.4■□□□□ 0.22
VPS4A-204ENST00000566354 PTMSP20962 102 aa16.4■□□□□ 0.22
VPS4A-204ENST00000566354 TNPO1Q92973 898 aaKnown RBP16.4■□□□□ 0.22
VPS4A-204ENST00000566354 MCM10Q7L590 875 aa16.39■□□□□ 0.21
VPS4A-204ENST00000566354 TSPYL6Q8N831 410 aa16.39■□□□□ 0.21
VPS4A-204ENST00000566354 LMOD3Q0VAK6 560 aa16.39■□□□□ 0.21
VPS4A-204ENST00000566354 RAB3GAP1Q15042 981 aa16.39■□□□□ 0.21
VPS4A-204ENST00000566354 TBC1D9Q6ZT07 1266 aa16.39■□□□□ 0.21
VPS4A-204ENST00000566354 GAS2L2Q8NHY3 880 aa16.39■□□□□ 0.21
VPS4A-204ENST00000566354 COL5A2P05997 1499 aaPredicted RBP16.38■□□□□ 0.21
VPS4A-204ENST00000566354 SKOR2Q2VWA4 1001 aaPredicted RBP16.38■□□□□ 0.21
VPS4A-204ENST00000566354 SIRT2Q8IXJ6 389 aa16.38■□□□□ 0.21
VPS4A-204ENST00000566354 PANK2Q9BZ23 570 aa16.38■□□□□ 0.21
VPS4A-204ENST00000566354 MBIPQ9NS73 344 aa16.38■□□□□ 0.21
VPS4A-204ENST00000566354 FAM208AQ9UK61 1670 aaKnown RBP16.38■□□□□ 0.21
VPS4A-204ENST00000566354 CFAP44Q96MT7 982 aa16.37■□□□□ 0.21
VPS4A-204ENST00000566354 API5Q9BZZ5 524 aaKnown RBP16.37■□□□□ 0.21
VPS4A-204ENST00000566354 C1orf115Q9H7X2 142 aa16.37■□□□□ 0.21
VPS4A-204ENST00000566354 TWISTNBQ3B726 338 aaPredicted RBP16.37■□□□□ 0.21
VPS4A-204ENST00000566354 GRPEL1Q9HAV7 217 aa16.37■□□□□ 0.21
VPS4A-204ENST00000566354 STRN4Q9NRL3 753 aa16.37■□□□□ 0.21
VPS4A-204ENST00000566354 ADAMTS2O95450 1211 aa16.36■□□□□ 0.21
VPS4A-204ENST00000566354 HSP90AA1P07900 732 aaKnown RBP16.36■□□□□ 0.21
VPS4A-204ENST00000566354 TAF7LQ5H9L4 462 aa16.36■□□□□ 0.21
VPS4A-204ENST00000566354 WDR17Q8IZU2 1322 aa16.36■□□□□ 0.21
VPS4A-204ENST00000566354 K7ELQ4 463 aaPredicted RBP16.36■□□□□ 0.21
VPS4A-204ENST00000566354 NUTM2BA6NNL0 878 aaPredicted RBP16.35■□□□□ 0.21
VPS4A-204ENST00000566354 NUTM2EB1AL46 878 aaPredicted RBP16.35■□□□□ 0.21
VPS4A-204ENST00000566354 ELL2O00472 640 aaPredicted RBP16.35■□□□□ 0.21
VPS4A-204ENST00000566354 NUTM2AQ8IVF1 878 aaPredicted RBP16.35■□□□□ 0.21
VPS4A-204ENST00000566354 BTG4Q9NY30 223 aa16.35■□□□□ 0.21
VPS4A-204ENST00000566354 CDC45O75419 566 aa16.35■□□□□ 0.21
VPS4A-204ENST00000566354 LARP1Q6PKG0 1096 aaKnown RBP16.35■□□□□ 0.21
VPS4A-204ENST00000566354 TOM1L2Q6ZVM7 507 aa16.35■□□□□ 0.21
VPS4A-204ENST00000566354 CLCN1P35523 988 aa16.34■□□□□ 0.21
VPS4A-204ENST00000566354 MEGF6O75095 1541 aa16.34■□□□□ 0.21
VPS4A-204ENST00000566354 GNAT3A8MTJ3 354 aa16.34■□□□□ 0.21
VPS4A-204ENST00000566354 EVA1CP58658 441 aa16.34■□□□□ 0.21
VPS4A-204ENST00000566354 RAPGEF4Q8WZA2 1011 aa16.34■□□□□ 0.21
VPS4A-204ENST00000566354 RTF1Q92541 710 aaKnown RBP16.34■□□□□ 0.21
VPS4A-204ENST00000566354 MAP3K5Q99683 1374 aa16.33■□□□□ 0.21
VPS4A-204ENST00000566354 COL14A1Q05707 1796 aaKnown RBP16.33■□□□□ 0.2
VPS4A-204ENST00000566354 PLEKHO1Q53GL0 409 aaPredicted RBP16.33■□□□□ 0.2
VPS4A-204ENST00000566354 C8orf58Q8NAV2 365 aa16.33■□□□□ 0.2
VPS4A-204ENST00000566354 CD2BP2O95400 341 aaKnown RBP16.33■□□□□ 0.2
VPS4A-204ENST00000566354 ZNF530Q6P9A1 599 aaPredicted RBP16.32■□□□□ 0.2
VPS4A-204ENST00000566354 DCTPP1Q9H773 170 aa16.32■□□□□ 0.2
VPS4A-204ENST00000566354 TPRNQ4KMQ1 711 aa16.31■□□□□ 0.2
VPS4A-204ENST00000566354 AMOTQ4VCS5 1084 aa16.31■□□□□ 0.2
VPS4A-204ENST00000566354 CLEC17AQ6ZS10 378 aa16.31■□□□□ 0.2
VPS4A-204ENST00000566354 IL17REQ8NFR9 667 aa16.31■□□□□ 0.2
VPS4A-204ENST00000566354 CRB1P82279 1406 aa16.31■□□□□ 0.2
VPS4A-204ENST00000566354 TATP17735 454 aaPredicted RBP16.3■□□□□ 0.2
VPS4A-204ENST00000566354 PLEKHM2Q8IWE5 1019 aa16.3■□□□□ 0.2
VPS4A-204ENST00000566354 VSIG10Q8N0Z9 540 aa16.3■□□□□ 0.2
VPS4A-204ENST00000566354 JCADQ9P266 1359 aa16.3■□□□□ 0.2
VPS4A-204ENST00000566354 INTS3Q68E01 1043 aaKnown RBP16.3■□□□□ 0.2
VPS4A-204ENST00000566354 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
VPS4A-204ENST00000566354 CARD10Q9BWT7 1032 aa16.3■□□□□ 0.2
VPS4A-204ENST00000566354 GOLGA6L22H0YM25 854 aa16.29■□□□□ 0.2
VPS4A-204ENST00000566354 HTATSF1O43719 755 aaKnown RBP16.29■□□□□ 0.2
VPS4A-204ENST00000566354 HSPA1LP34931 641 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms