RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 ARHGEF25Q86VW2 580 aa16.33■□□□□ 0.2
HDGFL3-204ENST00000563790 MEGF6O75095 1541 aa16.33■□□□□ 0.2
HDGFL3-204ENST00000563790 ITGBL1O95965 494 aaPredicted RBP16.32■□□□□ 0.2
HDGFL3-204ENST00000563790 PLEKHG3A1L390 1219 aa16.31■□□□□ 0.2
HDGFL3-204ENST00000563790 RASSF7Q02833 373 aa16.31■□□□□ 0.2
HDGFL3-204ENST00000563790 AK7Q96M32 723 aa16.31■□□□□ 0.2
HDGFL3-204ENST00000563790 PHF14O94880 888 aa16.3■□□□□ 0.2
HDGFL3-204ENST00000563790 SSFA2P28290 1259 aa16.3■□□□□ 0.2
HDGFL3-204ENST00000563790 MNX1P50219 401 aaPredicted RBP16.3■□□□□ 0.2
HDGFL3-204ENST00000563790 CACNB1Q02641 598 aaPredicted RBP16.3■□□□□ 0.2
HDGFL3-204ENST00000563790 CFAP70Q5T0N1 1121 aa16.3■□□□□ 0.2
HDGFL3-204ENST00000563790 CACNA1AO00555 2505 aa16.3■□□□□ 0.2
HDGFL3-204ENST00000563790 ADAMTSL1Q8N6G6 1762 aa16.3■□□□□ 0.2
HDGFL3-204ENST00000563790 NLRP6P59044 892 aa16.29■□□□□ 0.2
HDGFL3-204ENST00000563790 DPY19L2Q6NUT2 758 aa16.29■□□□□ 0.2
HDGFL3-204ENST00000563790 LDHDQ86WU2 507 aa16.29■□□□□ 0.2
HDGFL3-204ENST00000563790 ADGRB1O14514 1584 aa16.29■□□□□ 0.2
HDGFL3-204ENST00000563790 RGL3Q3MIN7 710 aa16.28■□□□□ 0.2
HDGFL3-204ENST00000563790 MPNDQ8N594 471 aa16.28■□□□□ 0.2
HDGFL3-204ENST00000563790 GPR101Q96P66 508 aaPredicted RBP16.28■□□□□ 0.2
HDGFL3-204ENST00000563790 VCANP13611 3396 aa16.28■□□□□ 0.2
HDGFL3-204ENST00000563790 BRCA2P51587 3418 aa16.27■□□□□ 0.2
HDGFL3-204ENST00000563790 MAP2P11137 1827 aaKnown RBP16.27■□□□□ 0.2
HDGFL3-204ENST00000563790 CAPNS2Q96L46 248 aa16.27■□□□□ 0.2
HDGFL3-204ENST00000563790 CCDC87Q9NVE4 849 aa16.27■□□□□ 0.2
HDGFL3-204ENST00000563790 DLEC1Q9Y238 1755 aa16.26■□□□□ 0.19
HDGFL3-204ENST00000563790 ECE1P42892 770 aa16.26■□□□□ 0.19
HDGFL3-204ENST00000563790 DDX54Q8TDD1 881 aaKnown RBP16.26■□□□□ 0.19
HDGFL3-204ENST00000563790 CCDC61Q9Y6R9 512 aa16.26■□□□□ 0.19
HDGFL3-204ENST00000563790 ITGB4P16144 1822 aa16.26■□□□□ 0.19
HDGFL3-204ENST00000563790 LTN1O94822 1766 aa16.25■□□□□ 0.19
HDGFL3-204ENST00000563790 ABT1Q9ULW3 272 aaKnown RBP16.24■□□□□ 0.19
HDGFL3-204ENST00000563790 NFAT5O94916 1531 aa16.24■□□□□ 0.19
HDGFL3-204ENST00000563790 FER1L6Q2WGJ9 1857 aa16.23■□□□□ 0.19
HDGFL3-204ENST00000563790 MAP2K2P36507 400 aa16.23■□□□□ 0.19
HDGFL3-204ENST00000563790 NLRP2Q9NX02 1062 aa16.23■□□□□ 0.19
HDGFL3-204ENST00000563790 TRAK1Q9UPV9 953 aa16.23■□□□□ 0.19
HDGFL3-204ENST00000563790 KIAA0100Q14667 2235 aaKnown RBP16.22■□□□□ 0.19
HDGFL3-204ENST00000563790 FAM208AQ9UK61 1670 aaKnown RBP16.21■□□□□ 0.18
HDGFL3-204ENST00000563790 CENPFP49454 3210 aa16.21■□□□□ 0.18
HDGFL3-204ENST00000563790 AKAP11Q9UKA4 1901 aa16.2■□□□□ 0.18
HDGFL3-204ENST00000563790 PALLDQ8WX93 1383 aa16.19■□□□□ 0.18
HDGFL3-204ENST00000563790 CYP4F22Q6NT55 531 aa16.19■□□□□ 0.18
HDGFL3-204ENST00000563790 NLGN1Q8N2Q7 840 aa16.19■□□□□ 0.18
HDGFL3-204ENST00000563790 KCNH5Q8NCM2 988 aa16.19■□□□□ 0.18
HDGFL3-204ENST00000563790 CDK19Q9BWU1 502 aa16.17■□□□□ 0.18
HDGFL3-204ENST00000563790 SPTBN5Q9NRC6 3674 aaKnown RBP16.16■□□□□ 0.18
HDGFL3-204ENST00000563790 IQCA1LA6NCM1 817 aa16.16■□□□□ 0.18
HDGFL3-204ENST00000563790 PAXIP1Q6ZW49 1069 aaPredicted RBP16.16■□□□□ 0.18
HDGFL3-204ENST00000563790 AOC2O75106 756 aa16.15■□□□□ 0.18
HDGFL3-204ENST00000563790 BRPF1P55201 1214 aaPredicted RBP16.15■□□□□ 0.18
HDGFL3-204ENST00000563790 TMF1P82094 1093 aa16.15■□□□□ 0.18
HDGFL3-204ENST00000563790 GRM1Q13255 1194 aa16.15■□□□□ 0.18
HDGFL3-204ENST00000563790 TAF1DQ9H5J8 278 aaPredicted RBP16.15■□□□□ 0.18
HDGFL3-204ENST00000563790 PARP3Q9Y6F1 533 aa16.14■□□□□ 0.17
HDGFL3-204ENST00000563790 TTC28Q96AY4 2481 aa16.14■□□□□ 0.17
HDGFL3-204ENST00000563790 HTTP42858 3142 aa16.13■□□□□ 0.17
HDGFL3-204ENST00000563790 LAMA3Q16787 3333 aa16.13■□□□□ 0.17
HDGFL3-204ENST00000563790 CHRNA5P30532 468 aa16.13■□□□□ 0.17
HDGFL3-204ENST00000563790 NFKBIEO00221 500 aa16.12■□□□□ 0.17
HDGFL3-204ENST00000563790 DDNO94850 711 aaPredicted RBP16.12■□□□□ 0.17
HDGFL3-204ENST00000563790 COLQQ9Y215 455 aaPredicted RBP16.12■□□□□ 0.17
HDGFL3-204ENST00000563790 CNTROBQ8N137 903 aa16.11■□□□□ 0.17
HDGFL3-204ENST00000563790 RGPD2P0DJD1 1756 aa16.1■□□□□ 0.17
HDGFL3-204ENST00000563790 AFDNP55196 1824 aaKnown RBP16.1■□□□□ 0.17
HDGFL3-204ENST00000563790 GNPATO15228 680 aa16.1■□□□□ 0.17
HDGFL3-204ENST00000563790 SOX12O15370 315 aa16.1■□□□□ 0.17
HDGFL3-204ENST00000563790 L3MBTL3Q96JM7 780 aaPredicted RBP16.1■□□□□ 0.17
HDGFL3-204ENST00000563790 DDX21Q9NR30 783 aaKnown RBP eCLIP16.1■□□□□ 0.17
HDGFL3-204ENST00000563790 RBBP6Q7Z6E9 1792 aaKnown RBP16.1■□□□□ 0.17
HDGFL3-204ENST00000563790 ERFEQ4G0M1 354 aa16.09■□□□□ 0.17
HDGFL3-204ENST00000563790 LINC00116Q8NCU8 138 aa16.09■□□□□ 0.17
HDGFL3-204ENST00000563790 HPS5Q9UPZ3 1129 aa16.08■□□□□ 0.16
HDGFL3-204ENST00000563790 NBPF1Q3BBV0 1214 aa16.07■□□□□ 0.16
HDGFL3-204ENST00000563790 EAPPQ56P03 285 aaPredicted RBP16.07■□□□□ 0.16
HDGFL3-204ENST00000563790 MAP1SQ66K74 1059 aaPredicted RBP16.07■□□□□ 0.16
HDGFL3-204ENST00000563790 COL25A1Q9BXS0 654 aaPredicted RBP16.07■□□□□ 0.16
HDGFL3-204ENST00000563790 CLEC11AQ9Y240 323 aa16.07■□□□□ 0.16
HDGFL3-204ENST00000563790 SCN11AQ9UI33 1791 aa16.06■□□□□ 0.16
HDGFL3-204ENST00000563790 SMARCC1Q92922 1105 aaPredicted RBP16.06■□□□□ 0.16
HDGFL3-204ENST00000563790 TLL2Q9Y6L7 1015 aa16.06■□□□□ 0.16
HDGFL3-204ENST00000563790 GYS1P13807 737 aa16.05■□□□□ 0.16
HDGFL3-204ENST00000563790 CTU1Q7Z7A3 348 aaKnown RBP16.05■□□□□ 0.16
HDGFL3-204ENST00000563790 ANKRD24Q8TF21 1146 aa16.05■□□□□ 0.16
HDGFL3-204ENST00000563790 MYH14Q7Z406 1995 aaKnown RBP16.05■□□□□ 0.16
HDGFL3-204ENST00000563790 APLP2Q06481 763 aa16.04■□□□□ 0.16
HDGFL3-204ENST00000563790 CIAPIN1Q6FI81 312 aa16.04■□□□□ 0.16
HDGFL3-204ENST00000563790 ZCRB1Q8TBF4 217 aaKnown RBP16.04■□□□□ 0.16
HDGFL3-204ENST00000563790 COL5A3P25940 1745 aaPredicted RBP16.02■□□□□ 0.16
HDGFL3-204ENST00000563790 TRAPPC3LQ5T215 181 aa16.02■□□□□ 0.16
HDGFL3-204ENST00000563790 SLC4A1APQ9BWU0 796 aaKnown RBP16.02■□□□□ 0.16
HDGFL3-204ENST00000563790 MUC3AQ02505 3323 aa16.02■□□□□ 0.15
HDGFL3-204ENST00000563790 PIEZO1Q92508 2521 aa16.01■□□□□ 0.15
HDGFL3-204ENST00000563790 LAMB4A4D0S4 1761 aa16.01■□□□□ 0.15
HDGFL3-204ENST00000563790 PAPPA2Q9BXP8 1791 aa16.01■□□□□ 0.15
HDGFL3-204ENST00000563790 MAPK8IP2Q13387 824 aaPredicted RBP16.01■□□□□ 0.15
HDGFL3-204ENST00000563790 PRDM6Q9NQX0 595 aa16.01■□□□□ 0.15
HDGFL3-204ENST00000563790 LAMA2P24043 3122 aaKnown RBP16.01■□□□□ 0.15
HDGFL3-204ENST00000563790 CACNA1SQ13698 1873 aa16■□□□□ 0.15
HDGFL3-204ENST00000563790 CST9Q5W186 159 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 106.3 ms