RNA–Protein interactions for RNA: ENST00000563759.1

LINC01960-201, Transcript of long intergenic non-protein coding RNA 1960, humanhuman

BASIC

Gene LINC01960, Length 1,884 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01960-201ENST00000563759 THRAP3Q9Y2W1 955 aaKnown RBP28.21■■■□□ 2.11
LINC01960-201ENST00000563759 SPATA31A5Q5VU36 1347 aa28.2■■■□□ 2.11
LINC01960-201ENST00000563759 SPATA31A7Q8IWB4 1347 aa28.2■■■□□ 2.11
LINC01960-201ENST00000563759 DDX54Q8TDD1 881 aaKnown RBP28.2■■■□□ 2.1
LINC01960-201ENST00000563759 BCL9LQ86UU0 1499 aa28.2■■■□□ 2.1
LINC01960-201ENST00000563759 SLC52A2Q9HAB3 445 aa28.18■■■□□ 2.1
LINC01960-201ENST00000563759 CDCA7Q9BWT1 371 aaPredicted RBP28.17■■■□□ 2.1
LINC01960-201ENST00000563759 TOGARAM1Q9Y4F4 1720 aa28.17■■■□□ 2.1
LINC01960-201ENST00000563759 TNS2Q63HR2 1409 aa28.17■■■□□ 2.1
LINC01960-201ENST00000563759 CACNA1FO60840 1977 aa28.17■■■□□ 2.1
LINC01960-201ENST00000563759 KIF16BQ96L93 1317 aa28.17■■■□□ 2.1
LINC01960-201ENST00000563759 C20orf194Q5TEA3 1177 aa28.17■■■□□ 2.1
LINC01960-201ENST00000563759 FNBP4Q8N3X1 1017 aaPredicted RBP28.17■■■□□ 2.1
LINC01960-201ENST00000563759 KAT6BQ8WYB5 2073 aa28.16■■■□□ 2.1
LINC01960-201ENST00000563759 USP21Q9UK80 565 aa28.14■■■□□ 2.1
LINC01960-201ENST00000563759 VPS72Q15906 364 aa28.13■■■□□ 2.09
LINC01960-201ENST00000563759 EXOC5O00471 708 aa28.12■■■□□ 2.09
LINC01960-201ENST00000563759 NKX1-1Q15270 411 aaPredicted RBP28.12■■■□□ 2.09
LINC01960-201ENST00000563759 ZKSCAN2Q63HK3 967 aa28.12■■■□□ 2.09
LINC01960-201ENST00000563759 NFATC2IPQ8NCF5 419 aa28.12■■■□□ 2.09
LINC01960-201ENST00000563759 ITGB4P16144 1822 aa28.12■■■□□ 2.09
LINC01960-201ENST00000563759 TCERG1O14776 1098 aaKnown RBP28.12■■■□□ 2.09
LINC01960-201ENST00000563759 SOS1Q07889 1333 aaPredicted RBP28.12■■■□□ 2.09
LINC01960-201ENST00000563759 CABP4P57796 275 aa28.11■■■□□ 2.09
LINC01960-201ENST00000563759 PDE3AQ14432 1141 aa28.11■■■□□ 2.09
LINC01960-201ENST00000563759 EXOC6Q8TAG9 804 aa28.11■■■□□ 2.09
LINC01960-201ENST00000563759 CRBNQ96SW2 442 aa28.11■■■□□ 2.09
LINC01960-201ENST00000563759 EIF4A1P60842 406 aaKnown RBP28.1■■■□□ 2.09
LINC01960-201ENST00000563759 BARGINQ6ZT62 677 aa28.1■■■□□ 2.09
LINC01960-201ENST00000563759 KCNQ3O43525 872 aa28.1■■■□□ 2.09
LINC01960-201ENST00000563759 MRPL50Q8N5N7 158 aaKnown RBP28.1■■■□□ 2.09
LINC01960-201ENST00000563759 NOB1Q9ULX3 412 aaKnown RBP28.1■■■□□ 2.09
LINC01960-201ENST00000563759 BRPF1P55201 1214 aaPredicted RBP28.09■■■□□ 2.09
LINC01960-201ENST00000563759 PPP4R2Q9NY27 417 aa28.09■■■□□ 2.09
LINC01960-201ENST00000563759 IPO8O15397 1037 aaKnown RBP28.08■■■□□ 2.09
LINC01960-201ENST00000563759 DOT1LQ8TEK3 1739 aa28.08■■■□□ 2.09
LINC01960-201ENST00000563759 PAPPAQ13219 1627 aa28.08■■■□□ 2.09
LINC01960-201ENST00000563759 ERVV-2B6SEH9 535 aa28.08■■■□□ 2.09
LINC01960-201ENST00000563759 DDB1Q16531 1140 aa28.08■■■□□ 2.09
LINC01960-201ENST00000563759 AFF2P51816 1311 aa28.07■■■□□ 2.08
LINC01960-201ENST00000563759 FTSJ3Q8IY81 847 aaKnown RBP28.07■■■□□ 2.08
LINC01960-201ENST00000563759 C5P01031 1676 aa28.06■■■□□ 2.08
LINC01960-201ENST00000563759 ZNF790Q6PG37 636 aa28.06■■■□□ 2.08
LINC01960-201ENST00000563759 PANK1Q8TE04 598 aa28.06■■■□□ 2.08
LINC01960-201ENST00000563759 UBR2Q8IWV8 1755 aa28.06■■■□□ 2.08
LINC01960-201ENST00000563759 MS4A1P11836 297 aa28.06■■■□□ 2.08
LINC01960-201ENST00000563759 ATF7IPQ6VMQ6 1270 aa28.06■■■□□ 2.08
LINC01960-201ENST00000563759 CLUAP1Q96AJ1 413 aa28.06■■■□□ 2.08
LINC01960-201ENST00000563759 TRIM27P14373 513 aa28.05■■■□□ 2.08
LINC01960-201ENST00000563759 SLC39A6Q13433 755 aa28.05■■■□□ 2.08
LINC01960-201ENST00000563759 TTC5Q8N0Z6 440 aa28.05■■■□□ 2.08
LINC01960-201ENST00000563759 HOXB7P09629 217 aa28.04■■■□□ 2.08
LINC01960-201ENST00000563759 FAM98CQ17RN3 349 aaKnown RBP28.04■■■□□ 2.08
LINC01960-201ENST00000563759 CCDC30Q5VVM6 783 aa28.04■■■□□ 2.08
LINC01960-201ENST00000563759 STK31Q9BXU1 1019 aa28.04■■■□□ 2.08
LINC01960-201ENST00000563759 TNNQ9UQP3 1299 aa28.04■■■□□ 2.08
LINC01960-201ENST00000563759 HDGFL1Q5TGJ6 251 aa28.03■■■□□ 2.08
LINC01960-201ENST00000563759 DZIP1LQ8IYY4 767 aaKnown RBP28.03■■■□□ 2.08
LINC01960-201ENST00000563759 GLI3P10071 1580 aa28.02■■■□□ 2.08
LINC01960-201ENST00000563759 THSD7AQ9UPZ6 1657 aa28.01■■■□□ 2.07
LINC01960-201ENST00000563759 LAMB4A4D0S4 1761 aa28.01■■■□□ 2.07
LINC01960-201ENST00000563759 RLBP1P12271 317 aa28.01■■■□□ 2.07
LINC01960-201ENST00000563759 NECTIN2Q92692 538 aa28.01■■■□□ 2.07
LINC01960-201ENST00000563759 CHMP4AQ9BY43 222 aa28.01■■■□□ 2.07
LINC01960-201ENST00000563759 COG6Q9Y2V7 657 aa28.01■■■□□ 2.07
LINC01960-201ENST00000563759 HEG1Q9ULI3 1381 aa28.01■■■□□ 2.07
LINC01960-201ENST00000563759 SLC4A2P04920 1241 aa28■■■□□ 2.07
LINC01960-201ENST00000563759 ARHGAP45Q92619 1136 aa28■■■□□ 2.07
LINC01960-201ENST00000563759 TMOD3Q9NYL9 352 aa28■■■□□ 2.07
LINC01960-201ENST00000563759 A0A0G2JS52 829 aa28■■■□□ 2.07
LINC01960-201ENST00000563759 MYT1Q01538 1121 aa28■■■□□ 2.07
LINC01960-201ENST00000563759 GIGYF1O75420 1035 aaPredicted RBP27.98■■■□□ 2.07
LINC01960-201ENST00000563759 EIF2S2P20042 333 aaKnown RBP27.98■■■□□ 2.07
LINC01960-201ENST00000563759 ATRNO75882 1429 aa27.98■■■□□ 2.07
LINC01960-201ENST00000563759 TRPC5Q9UL62 973 aaPredicted RBP27.97■■■□□ 2.07
LINC01960-201ENST00000563759 B4GALNT3Q6L9W6 998 aa27.96■■■□□ 2.07
LINC01960-201ENST00000563759 ZNF496Q96IT1 587 aaPredicted RBP27.96■■■□□ 2.07
LINC01960-201ENST00000563759 CCDC136Q96JN2 1154 aa27.96■■■□□ 2.07
LINC01960-201ENST00000563759 FMNL2Q96PY5 1086 aa27.96■■■□□ 2.07
LINC01960-201ENST00000563759 API5Q9BZZ5 524 aaKnown RBP27.96■■■□□ 2.07
LINC01960-201ENST00000563759 GJD4Q96KN9 370 aaPredicted RBP27.95■■■□□ 2.07
LINC01960-201ENST00000563759 PTPRCP08575 1304 aa27.95■■■□□ 2.07
LINC01960-201ENST00000563759 MVPQ14764 893 aaKnown RBP27.95■■■□□ 2.06
LINC01960-201ENST00000563759 KCPQ6ZWJ8 1503 aa27.94■■■□□ 2.06
LINC01960-201ENST00000563759 ITPRIPQ8IWB1 547 aa27.93■■■□□ 2.06
LINC01960-201ENST00000563759 MARCH10Q8NA82 808 aaPredicted RBP27.93■■■□□ 2.06
LINC01960-201ENST00000563759 PRAMEF22A3QJZ6 481 aa27.92■■■□□ 2.06
LINC01960-201ENST00000563759 SYTL4Q96C24 671 aaPredicted RBP27.92■■■□□ 2.06
LINC01960-201ENST00000563759 ABCC4O15439 1325 aa27.92■■■□□ 2.06
LINC01960-201ENST00000563759 BCL9O00512 1426 aa27.92■■■□□ 2.06
LINC01960-201ENST00000563759 TMEM57Q8N5G2 664 aa27.91■■■□□ 2.06
LINC01960-201ENST00000563759 CHPF2Q9P2E5 772 aa27.91■■■□□ 2.06
LINC01960-201ENST00000563759 RGS12O14924 1447 aa27.91■■■□□ 2.06
LINC01960-201ENST00000563759 SNRPA1P09661 255 aaKnown RBP27.91■■■□□ 2.06
LINC01960-201ENST00000563759 PIGBQ92521 554 aa27.91■■■□□ 2.06
LINC01960-201ENST00000563759 G2E3Q7L622 706 aa27.9■■■□□ 2.06
LINC01960-201ENST00000563759 FLIIQ13045 1269 aa27.89■■■□□ 2.06
LINC01960-201ENST00000563759 N4BP2Q86UW6 1770 aaPredicted RBP27.89■■■□□ 2.06
LINC01960-201ENST00000563759 DBF4Q9UBU7 674 aaPredicted RBP27.89■■■□□ 2.05
LINC01960-201ENST00000563759 DDX19BQ9UMR2 479 aa27.89■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms