RNA–Protein interactions for RNA: ENST00000562747.1

CDT1-202, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

TSL 2

Gene CDT1, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-202ENST00000562747 SMARCC1Q92922 1105 aaPredicted RBP22.33■■□□□ 1.17
CDT1-202ENST00000562747 AK7Q96M32 723 aa22.33■■□□□ 1.17
CDT1-202ENST00000562747 DIAPH1O60610 1272 aaKnown RBP22.32■■□□□ 1.16
CDT1-202ENST00000562747 DDX10Q13206 875 aaKnown RBP22.32■■□□□ 1.16
CDT1-202ENST00000562747 LINC00116Q8NCU8 138 aa22.32■■□□□ 1.16
CDT1-202ENST00000562747 COL3A1P02461 1466 aaPredicted RBP22.31■■□□□ 1.16
CDT1-202ENST00000562747 KDRP35968 1356 aa22.31■■□□□ 1.16
CDT1-202ENST00000562747 ADCY9O60503 1353 aa22.3■■□□□ 1.16
CDT1-202ENST00000562747 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.3■■□□□ 1.16
CDT1-202ENST00000562747 PPP2R1AP30153 589 aa22.3■■□□□ 1.16
CDT1-202ENST00000562747 SULT6B1Q6IMI4 303 aa22.3■■□□□ 1.16
CDT1-202ENST00000562747 LOC102724428A0A0B4J2F2 783 aa22.28■■□□□ 1.16
CDT1-202ENST00000562747 SIK1P57059 783 aa22.28■■□□□ 1.16
CDT1-202ENST00000562747 ITPK1Q13572 414 aa22.28■■□□□ 1.16
CDT1-202ENST00000562747 AEBP1Q8IUX7 1158 aa22.28■■□□□ 1.16
CDT1-202ENST00000562747 CFAP53Q96M91 514 aa22.28■■□□□ 1.16
CDT1-202ENST00000562747 WWC3Q9ULE0 1092 aa22.28■■□□□ 1.16
CDT1-202ENST00000562747 KIAA1551Q9HCM1 1747 aa22.28■■□□□ 1.16
CDT1-202ENST00000562747 ASAP1Q9ULH1 1129 aa22.27■■□□□ 1.16
CDT1-202ENST00000562747 PHKG2P15735 406 aa22.26■■□□□ 1.15
CDT1-202ENST00000562747 SSFA2P28290 1259 aa22.26■■□□□ 1.15
CDT1-202ENST00000562747 AMOTQ4VCS5 1084 aa22.26■■□□□ 1.15
CDT1-202ENST00000562747 PLEKHO1Q53GL0 409 aaPredicted RBP22.26■■□□□ 1.15
CDT1-202ENST00000562747 IFNL2Q8IZJ0 200 aa22.26■■□□□ 1.15
CDT1-202ENST00000562747 TMOD3Q9NYL9 352 aa22.26■■□□□ 1.15
CDT1-202ENST00000562747 COL5A3P25940 1745 aaPredicted RBP22.25■■□□□ 1.15
CDT1-202ENST00000562747 KIF13BQ9NQT8 1826 aa22.24■■□□□ 1.15
CDT1-202ENST00000562747 HMGB2P26583 209 aaKnown RBP22.24■■□□□ 1.15
CDT1-202ENST00000562747 CICQ96RK0 1608 aaPredicted RBP22.24■■□□□ 1.15
CDT1-202ENST00000562747 GNPATO15228 680 aa22.23■■□□□ 1.15
CDT1-202ENST00000562747 ZNF831Q5JPB2 1677 aa22.23■■□□□ 1.15
CDT1-202ENST00000562747 RALBP1Q15311 655 aa22.22■■□□□ 1.15
CDT1-202ENST00000562747 ATG3Q9NT62 314 aa22.22■■□□□ 1.15
CDT1-202ENST00000562747 CEP350Q5VT06 3117 aa22.22■■□□□ 1.15
CDT1-202ENST00000562747 N4BP2Q86UW6 1770 aaPredicted RBP22.21■■□□□ 1.15
CDT1-202ENST00000562747 U2SURPO15042 1029 aaKnown RBP22.21■■□□□ 1.15
CDT1-202ENST00000562747 HMOX1P09601 288 aa22.21■■□□□ 1.15
CDT1-202ENST00000562747 ATP6V1AP38606 617 aa22.21■■□□□ 1.15
CDT1-202ENST00000562747 HSP90AB1P08238 724 aaKnown RBP22.2■■□□□ 1.14
CDT1-202ENST00000562747 ZNF526Q8TF50 670 aaPredicted RBP22.2■■□□□ 1.14
CDT1-202ENST00000562747 NUDCQ9Y266 331 aa22.2■■□□□ 1.14
CDT1-202ENST00000562747 C4AP0C0L4 1744 aa22.2■■□□□ 1.14
CDT1-202ENST00000562747 ZNF530Q6P9A1 599 aaPredicted RBP22.19■■□□□ 1.14
CDT1-202ENST00000562747 SLC4A9Q96Q91 983 aa22.19■■□□□ 1.14
CDT1-202ENST00000562747 GPBP1L1Q9HC44 474 aaPredicted RBP22.19■■□□□ 1.14
CDT1-202ENST00000562747 PXDNLA1KZ92 1463 aa22.19■■□□□ 1.14
CDT1-202ENST00000562747 KDM6AO15550 1401 aaPredicted RBP22.18■■□□□ 1.14
CDT1-202ENST00000562747 ZNF316A6NFI3 1004 aaPredicted RBP22.18■■□□□ 1.14
CDT1-202ENST00000562747 C1orf141Q5JVX7 400 aa22.17■■□□□ 1.14
CDT1-202ENST00000562747 DCAF5Q96JK2 942 aa22.17■■□□□ 1.14
CDT1-202ENST00000562747 MMP10P09238 476 aa22.16■■□□□ 1.14
CDT1-202ENST00000562747 C10orf71Q711Q0 1435 aa22.14■■□□□ 1.14
CDT1-202ENST00000562747 MYH14Q7Z406 1995 aaKnown RBP22.14■■□□□ 1.14
CDT1-202ENST00000562747 BRCA1P38398 1863 aaKnown RBP22.14■■□□□ 1.13
CDT1-202ENST00000562747 ERVV-2B6SEH9 535 aa22.13■■□□□ 1.13
CDT1-202ENST00000562747 AKAP4Q5JQC9 854 aa22.13■■□□□ 1.13
CDT1-202ENST00000562747 TJP1Q07157 1748 aa22.13■■□□□ 1.13
CDT1-202ENST00000562747 MYBBP1AQ9BQG0 1328 aaKnown RBP22.12■■□□□ 1.13
CDT1-202ENST00000562747 RBM42Q9BTD8 480 aaKnown RBP22.12■■□□□ 1.13
CDT1-202ENST00000562747 U2AF1L5P0DN76 240 aaPredicted RBP22.11■■□□□ 1.13
CDT1-202ENST00000562747 U2AF1Q01081 240 aaKnown RBP eCLIP22.11■■□□□ 1.13
CDT1-202ENST00000562747 MTHFSDQ2M296 383 aaKnown RBP22.11■■□□□ 1.13
CDT1-202ENST00000562747 RSPH6AQ9H0K4 717 aa22.11■■□□□ 1.13
CDT1-202ENST00000562747 RTCBQ9Y3I0 505 aaKnown RBP22.11■■□□□ 1.13
CDT1-202ENST00000562747 CNTNAP4Q9C0A0 1308 aa22.09■■□□□ 1.13
CDT1-202ENST00000562747 FCHSD2O94868 740 aa22.09■■□□□ 1.13
CDT1-202ENST00000562747 TRAPPC3LQ5T215 181 aa22.09■■□□□ 1.13
CDT1-202ENST00000562747 ARHGEF1Q92888 912 aaKnown RBP22.09■■□□□ 1.13
CDT1-202ENST00000562747 SCN11AQ9UI33 1791 aa22.08■■□□□ 1.13
CDT1-202ENST00000562747 KIF3CO14782 793 aa22.08■■□□□ 1.13
CDT1-202ENST00000562747 GYS1P13807 737 aa22.08■■□□□ 1.13
CDT1-202ENST00000562747 HSPA6P17066 643 aa22.08■■□□□ 1.13
CDT1-202ENST00000562747 PRKAR2BP31323 418 aa22.08■■□□□ 1.13
CDT1-202ENST00000562747 GAS2L2Q8NHY3 880 aa22.08■■□□□ 1.13
CDT1-202ENST00000562747 PRKRIP1Q9H875 184 aaPredicted RBP22.08■■□□□ 1.13
CDT1-202ENST00000562747 ADAMTS7Q9UKP4 1686 aa22.07■■□□□ 1.12
CDT1-202ENST00000562747 A0A0G2JLW4 131 aa22.07■■□□□ 1.12
CDT1-202ENST00000562747 CABP4P57796 275 aa22.07■■□□□ 1.12
CDT1-202ENST00000562747 RC3H1Q5TC82 1133 aaKnown RBP22.07■■□□□ 1.12
CDT1-202ENST00000562747 NLGN1Q8N2Q7 840 aa22.06■■□□□ 1.12
CDT1-202ENST00000562747 RPS6KA4O75676 772 aa22.05■■□□□ 1.12
CDT1-202ENST00000562747 ADRA2BP18089 450 aa22.05■■□□□ 1.12
CDT1-202ENST00000562747 TGFB2P61812 414 aa22.05■■□□□ 1.12
CDT1-202ENST00000562747 BCS1LQ9Y276 419 aa22.05■■□□□ 1.12
CDT1-202ENST00000562747 ARFGEF1Q9Y6D6 1849 aa22.05■■□□□ 1.12
CDT1-202ENST00000562747 DPEP1P16444 411 aa22.04■■□□□ 1.12
CDT1-202ENST00000562747 RNMTO43148 476 aaKnown RBP22.03■■□□□ 1.12
CDT1-202ENST00000562747 PTCD1O75127 700 aaKnown RBP22.03■■□□□ 1.12
CDT1-202ENST00000562747 IFFO2Q5TF58 517 aa22.03■■□□□ 1.12
CDT1-202ENST00000562747 PHACTR3Q96KR7 559 aa22.03■■□□□ 1.12
CDT1-202ENST00000562747 VIRMAQ69YN4 1812 aaKnown RBP22.03■■□□□ 1.12
CDT1-202ENST00000562747 MRC1P22897 1456 aa22.03■■□□□ 1.12
CDT1-202ENST00000562747 GNAT3A8MTJ3 354 aa22.02■■□□□ 1.12
CDT1-202ENST00000562747 RFC4P35249 363 aa22.02■■□□□ 1.12
CDT1-202ENST00000562747 NFATC2IPQ8NCF5 419 aa22.02■■□□□ 1.12
CDT1-202ENST00000562747 LGR6Q9HBX8 967 aa22.02■■□□□ 1.12
CDT1-202ENST00000562747 CCDC87Q9NVE4 849 aa22.02■■□□□ 1.12
CDT1-202ENST00000562747 SRP68Q9UHB9 627 aaKnown RBP22.02■■□□□ 1.12
CDT1-202ENST00000562747 CRKLP46109 303 aaKnown RBP22.01■■□□□ 1.11
CDT1-202ENST00000562747 PNNQ9H307 717 aaKnown RBP22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms