RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TEFQ10587 303 aa17.18■□□□□ 0.34
NEDD8-208ENST00000560427 NFATC2IPQ8NCF5 419 aa17.18■□□□□ 0.34
NEDD8-208ENST00000560427 ATG3Q9NT62 314 aa17.18■□□□□ 0.34
NEDD8-208ENST00000560427 CCNL1Q9UK58 526 aaPredicted RBP17.18■□□□□ 0.34
NEDD8-208ENST00000560427 VIRMAQ69YN4 1812 aaKnown RBP17.17■□□□□ 0.34
NEDD8-208ENST00000560427 LMOD3Q0VAK6 560 aa17.17■□□□□ 0.34
NEDD8-208ENST00000560427 IL17REQ8NFR9 667 aa17.17■□□□□ 0.34
NEDD8-208ENST00000560427 ASAP1Q9ULH1 1129 aa17.17■□□□□ 0.34
NEDD8-208ENST00000560427 CCDC184Q52MB2 194 aa17.16■□□□□ 0.34
NEDD8-208ENST00000560427 PNISRQ8TF01 805 aaKnown RBP17.16■□□□□ 0.34
NEDD8-208ENST00000560427 LRRC4BQ9NT99 713 aa17.16■□□□□ 0.34
NEDD8-208ENST00000560427 CICQ96RK0 1608 aaPredicted RBP17.16■□□□□ 0.34
NEDD8-208ENST00000560427 SIPA1L3O60292 1781 aaPredicted RBP17.15■□□□□ 0.34
NEDD8-208ENST00000560427 LOC102724428A0A0B4J2F2 783 aa17.15■□□□□ 0.34
NEDD8-208ENST00000560427 SIK1P57059 783 aa17.15■□□□□ 0.34
NEDD8-208ENST00000560427 STK32BQ9NY57 414 aa17.15■□□□□ 0.34
NEDD8-208ENST00000560427 C5P01031 1676 aa17.14■□□□□ 0.33
NEDD8-208ENST00000560427 TMPOP42166 694 aaKnown RBP17.14■□□□□ 0.33
NEDD8-208ENST00000560427 DIEXFQ68CQ4 756 aaKnown RBP17.13■□□□□ 0.33
NEDD8-208ENST00000560427 CCDC146Q8IYE0 955 aa17.13■□□□□ 0.33
NEDD8-208ENST00000560427 ANO8Q9HCE9 1232 aaPredicted RBP17.13■□□□□ 0.33
NEDD8-208ENST00000560427 DLG5Q8TDM6 1919 aa17.13■□□□□ 0.33
NEDD8-208ENST00000560427 CCER2I3L3R5 266 aa17.12■□□□□ 0.33
NEDD8-208ENST00000560427 RIPK4P57078 832 aa17.12■□□□□ 0.33
NEDD8-208ENST00000560427 SLC15A2Q16348 729 aa17.12■□□□□ 0.33
NEDD8-208ENST00000560427 MCM10Q7L590 875 aa17.12■□□□□ 0.33
NEDD8-208ENST00000560427 TTC5Q8N0Z6 440 aa17.12■□□□□ 0.33
NEDD8-208ENST00000560427 UBR2Q8IWV8 1755 aa17.12■□□□□ 0.33
NEDD8-208ENST00000560427 KCPQ6ZWJ8 1503 aa17.11■□□□□ 0.33
NEDD8-208ENST00000560427 AKT1S1Q96B36 256 aa17.11■□□□□ 0.33
NEDD8-208ENST00000560427 ATP6V1AP38606 617 aa17.1■□□□□ 0.33
NEDD8-208ENST00000560427 R3HDM1Q15032 1099 aaKnown RBP17.1■□□□□ 0.33
NEDD8-208ENST00000560427 ZNF790Q6PG37 636 aa17.1■□□□□ 0.33
NEDD8-208ENST00000560427 VSIG10Q8N0Z9 540 aa17.1■□□□□ 0.33
NEDD8-208ENST00000560427 C4BP0C0L5 1744 aa17.1■□□□□ 0.33
NEDD8-208ENST00000560427 QSER1Q2KHR3 1735 aa17.1■□□□□ 0.33
NEDD8-208ENST00000560427 TAF1LQ8IZX4 1826 aa17.1■□□□□ 0.33
NEDD8-208ENST00000560427 BTBD11A6QL63 1104 aa17.09■□□□□ 0.33
NEDD8-208ENST00000560427 RBM42Q9BTD8 480 aaKnown RBP17.09■□□□□ 0.33
NEDD8-208ENST00000560427 DCTN1Q14203 1278 aa17.08■□□□□ 0.32
NEDD8-208ENST00000560427 TAF7Q15545 349 aaPredicted RBP17.08■□□□□ 0.32
NEDD8-208ENST00000560427 ZNF827Q17R98 1081 aa17.08■□□□□ 0.32
NEDD8-208ENST00000560427 NCBP3Q53F19 620 aaKnown RBP17.08■□□□□ 0.32
NEDD8-208ENST00000560427 BABAM1Q9NWV8 329 aa17.08■□□□□ 0.32
NEDD8-208ENST00000560427 COL5A3P25940 1745 aaPredicted RBP17.07■□□□□ 0.32
NEDD8-208ENST00000560427 CNTNAP4Q9C0A0 1308 aa17.07■□□□□ 0.32
NEDD8-208ENST00000560427 PSDA5PKW4 1024 aaPredicted RBP17.07■□□□□ 0.32
NEDD8-208ENST00000560427 PTCD1O75127 700 aaKnown RBP17.07■□□□□ 0.32
NEDD8-208ENST00000560427 KCNQ4P56696 695 aa17.07■□□□□ 0.32
NEDD8-208ENST00000560427 SLC39A6Q13433 755 aa17.07■□□□□ 0.32
NEDD8-208ENST00000560427 ITPK1Q13572 414 aa17.07■□□□□ 0.32
NEDD8-208ENST00000560427 SLC4A9Q96Q91 983 aa17.07■□□□□ 0.32
NEDD8-208ENST00000560427 TJP1Q07157 1748 aa17.07■□□□□ 0.32
NEDD8-208ENST00000560427 APAF1O14727 1248 aa17.06■□□□□ 0.32
NEDD8-208ENST00000560427 LINC00116Q8NCU8 138 aa17.06■□□□□ 0.32
NEDD8-208ENST00000560427 AK7Q96M32 723 aa17.06■□□□□ 0.32
NEDD8-208ENST00000560427 FMNL2Q96PY5 1086 aa17.06■□□□□ 0.32
NEDD8-208ENST00000560427 TFCP2L1Q9NZI6 479 aa17.06■□□□□ 0.32
NEDD8-208ENST00000560427 RRP7AQ9Y3A4 280 aaKnown RBP17.06■□□□□ 0.32
NEDD8-208ENST00000560427 CASZ1Q86V15 1759 aa17.06■□□□□ 0.32
NEDD8-208ENST00000560427 HEG1Q9ULI3 1381 aa17.05■□□□□ 0.32
NEDD8-208ENST00000560427 CALD1Q05682 793 aaKnown RBP17.05■□□□□ 0.32
NEDD8-208ENST00000560427 NEUROD2Q15784 382 aa17.05■□□□□ 0.32
NEDD8-208ENST00000560427 RC3H1Q5TC82 1133 aaKnown RBP17.05■□□□□ 0.32
NEDD8-208ENST00000560427 FLAD1Q8NFF5 587 aa17.05■□□□□ 0.32
NEDD8-208ENST00000560427 TRIM35Q9UPQ4 493 aa17.05■□□□□ 0.32
NEDD8-208ENST00000560427 KDM3BQ7LBC6 1761 aa17.05■□□□□ 0.32
NEDD8-208ENST00000560427 CCDC27Q2M243 656 aa17.04■□□□□ 0.32
NEDD8-208ENST00000560427 TEX13AQ9BXU3 409 aaPredicted RBP17.04■□□□□ 0.32
NEDD8-208ENST00000560427 SSFA2P28290 1259 aa17.03■□□□□ 0.32
NEDD8-208ENST00000560427 NGEFQ8N5V2 710 aa17.03■□□□□ 0.32
NEDD8-208ENST00000560427 ZNF496Q96IT1 587 aaPredicted RBP17.03■□□□□ 0.32
NEDD8-208ENST00000560427 THUMPD2Q9BTF0 503 aaKnown RBP17.03■□□□□ 0.32
NEDD8-208ENST00000560427 PNPLA7Q6ZV29 1317 aa17.02■□□□□ 0.32
NEDD8-208ENST00000560427 FAM9BQ8IZU0 186 aa17.02■□□□□ 0.32
NEDD8-208ENST00000560427 SLC16A10Q8TF71 515 aa17.02■□□□□ 0.32
NEDD8-208ENST00000560427 TUBGCP6Q96RT7 1819 aa17.02■□□□□ 0.31
NEDD8-208ENST00000560427 LRP5O75197 1615 aa17.02■□□□□ 0.31
NEDD8-208ENST00000560427 STARD3NLO95772 234 aa17.01■□□□□ 0.31
NEDD8-208ENST00000560427 ADRA2BP18089 450 aa17.01■□□□□ 0.31
NEDD8-208ENST00000560427 DNAJC10Q8IXB1 793 aa17.01■□□□□ 0.31
NEDD8-208ENST00000560427 UBR3Q6ZT12 1888 aa17.01■□□□□ 0.31
NEDD8-208ENST00000560427 GNPATO15228 680 aa17■□□□□ 0.31
NEDD8-208ENST00000560427 CYP19A1P11511 503 aaPredicted RBP17■□□□□ 0.31
NEDD8-208ENST00000560427 CRKLP46109 303 aaKnown RBP17■□□□□ 0.31
NEDD8-208ENST00000560427 TSPYL4Q9UJ04 414 aa17■□□□□ 0.31
NEDD8-208ENST00000560427 KCNQ3O43525 872 aa16.99■□□□□ 0.31
NEDD8-208ENST00000560427 SNRPA1P09661 255 aaKnown RBP16.99■□□□□ 0.31
NEDD8-208ENST00000560427 MTFR1LQ9H019 292 aa16.99■□□□□ 0.31
NEDD8-208ENST00000560427 RTCBQ9Y3I0 505 aaKnown RBP16.99■□□□□ 0.31
NEDD8-208ENST00000560427 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.98■□□□□ 0.31
NEDD8-208ENST00000560427 CHL1O00533 1208 aa16.98■□□□□ 0.31
NEDD8-208ENST00000560427 RPS6KA4O75676 772 aa16.98■□□□□ 0.31
NEDD8-208ENST00000560427 CFAP44Q96MT7 982 aa16.98■□□□□ 0.31
NEDD8-208ENST00000560427 CCDC87Q9NVE4 849 aa16.98■□□□□ 0.31
NEDD8-208ENST00000560427 IFT57Q9NWB7 429 aa16.98■□□□□ 0.31
NEDD8-208ENST00000560427 EIF4A1P60842 406 aaKnown RBP16.97■□□□□ 0.31
NEDD8-208ENST00000560427 COL23A1Q86Y22 540 aaPredicted RBP16.97■□□□□ 0.31
NEDD8-208ENST00000560427 SPON1Q9HCB6 807 aa16.97■□□□□ 0.31
NEDD8-208ENST00000560427 LAMB4A4D0S4 1761 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms