RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 DHX57Q6P158 1386 aaKnown RBP8.61□□□□□ -1.03
USP3-215ENST00000559771 NRAPQ86VF7 1730 aa8.6□□□□□ -1.03
USP3-215ENST00000559771 SAFB2Q14151 953 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP3-215ENST00000559771 UNC5CLQ8IV45 518 aa8.6□□□□□ -1.03
USP3-215ENST00000559771 PRR36Q9H6K5 1346 aa8.59□□□□□ -1.03
USP3-215ENST00000559771 ANKARQ7Z5J8 1434 aa8.59□□□□□ -1.03
USP3-215ENST00000559771 ARHGEF28Q8N1W1 1705 aaKnown RBP8.58□□□□□ -1.04
USP3-215ENST00000559771 FAM83GA6ND36 823 aa8.58□□□□□ -1.04
USP3-215ENST00000559771 C11orf95C9JLR9 678 aaPredicted RBP8.58□□□□□ -1.04
USP3-215ENST00000559771 SMAPO00193 183 aa8.58□□□□□ -1.04
USP3-215ENST00000559771 PMFBP1Q8TBY8 1022 aa8.58□□□□□ -1.04
USP3-215ENST00000559771 ACIN1Q9UKV3 1341 aaKnown RBP8.57□□□□□ -1.04
USP3-215ENST00000559771 VPS72Q15906 364 aa8.57□□□□□ -1.04
USP3-215ENST00000559771 ZNF697Q5TEC3 545 aa8.57□□□□□ -1.04
USP3-215ENST00000559771 HIRIP3Q9BW71 556 aaPredicted RBP8.57□□□□□ -1.04
USP3-215ENST00000559771 TRAK1Q9UPV9 953 aa8.57□□□□□ -1.04
USP3-215ENST00000559771 TULP4Q9NRJ4 1543 aa8.57□□□□□ -1.04
USP3-215ENST00000559771 COPS2P61201 443 aa8.56□□□□□ -1.04
USP3-215ENST00000559771 PSME1Q06323 249 aa8.56□□□□□ -1.04
USP3-215ENST00000559771 CCDC125Q86Z20 511 aa8.56□□□□□ -1.04
USP3-215ENST00000559771 FAM198AQ9UFP1 575 aa8.56□□□□□ -1.04
USP3-215ENST00000559771 ARHGEF10O15013 1369 aa8.56□□□□□ -1.04
USP3-215ENST00000559771 MINK1Q8N4C8 1332 aaPredicted RBP8.55□□□□□ -1.04
USP3-215ENST00000559771 BLMP54132 1417 aaPredicted RBP8.55□□□□□ -1.04
USP3-215ENST00000559771 SEPT12Q8IYM1 358 aa8.55□□□□□ -1.04
USP3-215ENST00000559771 DCAF11Q8TEB1 546 aa8.55□□□□□ -1.04
USP3-215ENST00000559771 POGKQ9P215 609 aa8.55□□□□□ -1.04
USP3-215ENST00000559771 KDM2AQ9Y2K7 1162 aa8.55□□□□□ -1.04
USP3-215ENST00000559771 ATP7BP35670 1465 aa8.55□□□□□ -1.04
USP3-215ENST00000559771 COL14A1Q05707 1796 aaKnown RBP8.55□□□□□ -1.04
USP3-215ENST00000559771 TOPAZ1Q8N9V7 1692 aa8.54□□□□□ -1.04
USP3-215ENST00000559771 WASLO00401 505 aaPredicted RBP8.54□□□□□ -1.04
USP3-215ENST00000559771 TERTO14746 1132 aaKnown RBP8.54□□□□□ -1.04
USP3-215ENST00000559771 ZPR1O75312 459 aa8.54□□□□□ -1.04
USP3-215ENST00000559771 DEFB132Q7Z7B7 95 aa8.54□□□□□ -1.04
USP3-215ENST00000559771 PACS2Q86VP3 889 aa8.54□□□□□ -1.04
USP3-215ENST00000559771 ITSN1Q15811 1721 aa8.54□□□□□ -1.04
USP3-215ENST00000559771 THSD7AQ9UPZ6 1657 aa8.53□□□□□ -1.04
USP3-215ENST00000559771 AVPP01185 164 aa8.53□□□□□ -1.04
USP3-215ENST00000559771 HRCP23327 699 aa8.53□□□□□ -1.04
USP3-215ENST00000559771 LMOD2Q6P5Q4 547 aa8.53□□□□□ -1.04
USP3-215ENST00000559771 PHRF1Q9P1Y6 1649 aaKnown RBP8.53□□□□□ -1.04
USP3-215ENST00000559771 KIAA1210Q9ULL0 1709 aa8.52□□□□□ -1.05
USP3-215ENST00000559771 PPEF1O14829 653 aaPredicted RBP8.52□□□□□ -1.05
USP3-215ENST00000559771 EPAS1Q99814 870 aa8.52□□□□□ -1.05
USP3-215ENST00000559771 BTG4Q9NY30 223 aa8.52□□□□□ -1.05
USP3-215ENST00000559771 PKD2L1Q9P0L9 805 aa8.52□□□□□ -1.05
USP3-215ENST00000559771 ECM2O94769 699 aaPredicted RBP8.51□□□□□ -1.05
USP3-215ENST00000559771 HAP1P54257 671 aaPredicted RBP8.51□□□□□ -1.05
USP3-215ENST00000559771 KRT27Q7Z3Y8 459 aa8.51□□□□□ -1.05
USP3-215ENST00000559771 TNS1Q9HBL0 1735 aaKnown RBP8.51□□□□□ -1.05
USP3-215ENST00000559771 POLR3AO14802 1390 aaPredicted RBP8.5□□□□□ -1.05
USP3-215ENST00000559771 EIF3AQ14152 1382 aaKnown RBP8.5□□□□□ -1.05
USP3-215ENST00000559771 GPRASP1Q5JY77 1395 aa8.5□□□□□ -1.05
USP3-215ENST00000559771 PDE4AP27815 886 aa8.5□□□□□ -1.05
USP3-215ENST00000559771 NUDT16Q96DE0 195 aaKnown RBP8.5□□□□□ -1.05
USP3-215ENST00000559771 SPATA31A5Q5VU36 1347 aa8.5□□□□□ -1.05
USP3-215ENST00000559771 SPATA31A7Q8IWB4 1347 aa8.5□□□□□ -1.05
USP3-215ENST00000559771 SNRPBP14678 240 aaKnown RBP8.49□□□□□ -1.05
USP3-215ENST00000559771 NBPF1Q3BBV0 1214 aa8.49□□□□□ -1.05
USP3-215ENST00000559771 FAM182BQ5T319 152 aa8.49□□□□□ -1.05
USP3-215ENST00000559771 ANKLE1Q8NAG6 615 aa8.49□□□□□ -1.05
USP3-215ENST00000559771 CDK19Q9BWU1 502 aa8.49□□□□□ -1.05
USP3-215ENST00000559771 CCDC9Q9Y3X0 531 aaKnown RBP8.49□□□□□ -1.05
USP3-215ENST00000559771 LRP5O75197 1615 aa8.49□□□□□ -1.05
USP3-215ENST00000559771 LMO7Q8WWI1 1683 aa8.49□□□□□ -1.05
USP3-215ENST00000559771 RGPD1P0DJD0 1748 aa8.49□□□□□ -1.05
USP3-215ENST00000559771 KIAA0232Q92628 1395 aa8.48□□□□□ -1.05
USP3-215ENST00000559771 NRKQ7Z2Y5 1582 aa8.48□□□□□ -1.05
USP3-215ENST00000559771 NGDNQ8NEJ9 315 aaKnown RBP8.48□□□□□ -1.05
USP3-215ENST00000559771 CAMTA1Q9Y6Y1 1673 aa8.48□□□□□ -1.05
USP3-215ENST00000559771 PLEKHG3A1L390 1219 aa8.47□□□□□ -1.05
USP3-215ENST00000559771 CHRNA2Q15822 529 aa8.47□□□□□ -1.05
USP3-215ENST00000559771 NBPF8Q3BBV2 869 aa8.47□□□□□ -1.05
USP3-215ENST00000559771 PLA2G2CQ5R387 149 aa8.47□□□□□ -1.05
USP3-215ENST00000559771 NUTM2GQ5VZR2 741 aa8.47□□□□□ -1.05
USP3-215ENST00000559771 ACEP12821 1306 aa8.47□□□□□ -1.05
USP3-215ENST00000559771 SPATA31A1Q5TZJ5 1347 aa8.47□□□□□ -1.05
USP3-215ENST00000559771 DISP2A7MBM2 1401 aa8.46□□□□□ -1.05
USP3-215ENST00000559771 TSR1Q2NL82 804 aaKnown RBP8.46□□□□□ -1.06
USP3-215ENST00000559771 PRDM11Q9NQV5 511 aa8.46□□□□□ -1.06
USP3-215ENST00000559771 QRICH2Q9H0J4 1663 aa8.46□□□□□ -1.06
USP3-215ENST00000559771 FAM181BA6NEQ2 426 aa8.45□□□□□ -1.06
USP3-215ENST00000559771 ZC3H6P61129 1189 aaKnown RBP8.45□□□□□ -1.06
USP3-215ENST00000559771 EN1Q05925 392 aaPredicted RBP8.45□□□□□ -1.06
USP3-215ENST00000559771 MFSD10Q14728 455 aa8.45□□□□□ -1.06
USP3-215ENST00000559771 USP19O94966 1318 aa8.45□□□□□ -1.06
USP3-215ENST00000559771 CPDO75976 1380 aa8.45□□□□□ -1.06
USP3-215ENST00000559771 SSH2Q76I76 1423 aa8.45□□□□□ -1.06
USP3-215ENST00000559771 RREB1Q92766 1687 aa8.44□□□□□ -1.06
USP3-215ENST00000559771 AXIN1O15169 862 aa8.44□□□□□ -1.06
USP3-215ENST00000559771 SMCPP49901 116 aaPredicted RBP8.44□□□□□ -1.06
USP3-215ENST00000559771 SF3B2Q13435 895 aaKnown RBP8.44□□□□□ -1.06
USP3-215ENST00000559771 ZSCAN1Q8NBB4 408 aa8.44□□□□□ -1.06
USP3-215ENST00000559771 TATDN2Q93075 761 aa8.44□□□□□ -1.06
USP3-215ENST00000559771 LARP6Q9BRS8 491 aaKnown RBP8.44□□□□□ -1.06
USP3-215ENST00000559771 TOR4AQ9NXH8 423 aa8.44□□□□□ -1.06
USP3-215ENST00000559771 PPIP5K1Q6PFW1 1433 aa8.44□□□□□ -1.06
USP3-215ENST00000559771 TRPM1Q7Z4N2 1603 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 COL18A1P39060 1754 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms