RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 AMIGO3Q86WK7 504 aa16.03■□□□□ 0.16
USP3-214ENST00000559718 ZNF784Q8NCA9 323 aaPredicted RBP16.03■□□□□ 0.16
USP3-214ENST00000559718 SMARCC1Q92922 1105 aaPredicted RBP16.02■□□□□ 0.16
USP3-214ENST00000559718 PHKG2P15735 406 aa16.01■□□□□ 0.15
USP3-214ENST00000559718 PELP1Q8IZL8 1130 aaKnown RBP16.01■□□□□ 0.15
USP3-214ENST00000559718 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.01■□□□□ 0.152e-7■□□□□ 10.1
USP3-214ENST00000559718 CHD4Q14839 1912 aa16.01■□□□□ 0.15
USP3-214ENST00000559718 C4BP0C0L5 1744 aa16■□□□□ 0.15
USP3-214ENST00000559718 ASAP1Q9ULH1 1129 aa16■□□□□ 0.15
USP3-214ENST00000559718 LOC102724428A0A0B4J2F2 783 aa15.99■□□□□ 0.15
USP3-214ENST00000559718 SIK1P57059 783 aa15.99■□□□□ 0.15
USP3-214ENST00000559718 IFNL2Q8IZJ0 200 aa15.99■□□□□ 0.15
USP3-214ENST00000559718 TMOD3Q9NYL9 352 aa15.99■□□□□ 0.15
USP3-214ENST00000559718 IGSF1Q8N6C5 1336 aa15.98■□□□□ 0.15
USP3-214ENST00000559718 PHF14O94880 888 aa15.98■□□□□ 0.15
USP3-214ENST00000559718 LINC00116Q8NCU8 138 aa15.98■□□□□ 0.15
USP3-214ENST00000559718 AK7Q96M32 723 aa15.98■□□□□ 0.15
USP3-214ENST00000559718 ITPK1Q13572 414 aa15.97■□□□□ 0.15
USP3-214ENST00000559718 FLAD1Q8NFF5 587 aa15.97■□□□□ 0.15
USP3-214ENST00000559718 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.96■□□□□ 0.15
USP3-214ENST00000559718 YBX3P16989 372 aaKnown RBP eCLIP15.96■□□□□ 0.15
USP3-214ENST00000559718 MORC1Q86VD1 984 aa15.96■□□□□ 0.15
USP3-214ENST00000559718 ATG3Q9NT62 314 aa15.96■□□□□ 0.15
USP3-214ENST00000559718 UBR3Q6ZT12 1888 aa15.96■□□□□ 0.15
USP3-214ENST00000559718 AEBP1Q8IUX7 1158 aa15.95■□□□□ 0.14
USP3-214ENST00000559718 GOLGB1Q14789 3259 aaKnown RBP15.94■□□□□ 0.14
USP3-214ENST00000559718 HMGB2P26583 209 aaKnown RBP15.94■□□□□ 0.14
USP3-214ENST00000559718 ATP6V1AP38606 617 aa15.94■□□□□ 0.14
USP3-214ENST00000559718 GNPATO15228 680 aa15.93■□□□□ 0.14
USP3-214ENST00000559718 SSFA2P28290 1259 aa15.92■□□□□ 0.14
USP3-214ENST00000559718 PLEKHO1Q53GL0 409 aaPredicted RBP15.92■□□□□ 0.14
USP3-214ENST00000559718 ZNF530Q6P9A1 599 aaPredicted RBP15.92■□□□□ 0.14
USP3-214ENST00000559718 SLC4A9Q96Q91 983 aa15.92■□□□□ 0.14
USP3-214ENST00000559718 KNSTRNQ9Y448 316 aa15.92■□□□□ 0.14
USP3-214ENST00000559718 CD2APQ9Y5K6 639 aa15.92■□□□□ 0.14
USP3-214ENST00000559718 KDM6AO15550 1401 aaPredicted RBP15.92■□□□□ 0.14
USP3-214ENST00000559718 PLEKHG2Q9H7P9 1386 aa15.91■□□□□ 0.14
USP3-214ENST00000559718 AMER1Q5JTC6 1135 aaPredicted RBP15.91■□□□□ 0.14
USP3-214ENST00000559718 DCAF5Q96JK2 942 aa15.91■□□□□ 0.14
USP3-214ENST00000559718 KIF7Q2M1P5 1343 aa15.91■□□□□ 0.14
USP3-214ENST00000559718 KDRP35968 1356 aa15.9■□□□□ 0.14
USP3-214ENST00000559718 ERVV-2B6SEH9 535 aa15.9■□□□□ 0.14
USP3-214ENST00000559718 SULT6B1Q6IMI4 303 aa15.9■□□□□ 0.14
USP3-214ENST00000559718 HSP90AB1P08238 724 aaKnown RBP15.89■□□□□ 0.13
USP3-214ENST00000559718 IL13P35225 146 aa15.89■□□□□ 0.13
USP3-214ENST00000559718 AMOTQ4VCS5 1084 aa15.89■□□□□ 0.13
USP3-214ENST00000559718 WWC3Q9ULE0 1092 aa15.89■□□□□ 0.13
USP3-214ENST00000559718 GRIN3BO60391 1043 aa15.88■□□□□ 0.13
USP3-214ENST00000559718 CABP4P57796 275 aa15.88■□□□□ 0.13
USP3-214ENST00000559718 MTHFSP49914 203 aa15.87■□□□□ 0.13
USP3-214ENST00000559718 CHRDL2Q6WN34 429 aa15.87■□□□□ 0.13
USP3-214ENST00000559718 C1orf141Q5JVX7 400 aa15.86■□□□□ 0.13
USP3-214ENST00000559718 MMP10P09238 476 aa15.85■□□□□ 0.13
USP3-214ENST00000559718 C1QTNF8P60827 252 aa15.85■□□□□ 0.13
USP3-214ENST00000559718 NFATC2IPQ8NCF5 419 aa15.85■□□□□ 0.13
USP3-214ENST00000559718 RTCBQ9Y3I0 505 aaKnown RBP15.85■□□□□ 0.13
USP3-214ENST00000559718 PER1O15534 1290 aaPredicted RBP15.84■□□□□ 0.13
USP3-214ENST00000559718 PTCD1O75127 700 aaKnown RBP15.84■□□□□ 0.13
USP3-214ENST00000559718 TRAPPC3LQ5T215 181 aa15.84■□□□□ 0.13
USP3-214ENST00000559718 ARHGEF1Q92888 912 aaKnown RBP15.84■□□□□ 0.13
USP3-214ENST00000559718 MYH14Q7Z406 1995 aaKnown RBP15.84■□□□□ 0.13
USP3-214ENST00000559718 ZNF831Q5JPB2 1677 aa15.83■□□□□ 0.13
USP3-214ENST00000559718 COL5A3P25940 1745 aaPredicted RBP15.83■□□□□ 0.13
USP3-214ENST00000559718 CC2D1BQ5T0F9 858 aaKnown RBP15.83■□□□□ 0.12
USP3-214ENST00000559718 RC3H1Q5TC82 1133 aaKnown RBP15.83■□□□□ 0.12
USP3-214ENST00000559718 CNTNAP4Q9C0A0 1308 aa15.83■□□□□ 0.12
USP3-214ENST00000559718 HMOX1P09601 288 aa15.82■□□□□ 0.12
USP3-214ENST00000559718 GIGYF1O75420 1035 aaPredicted RBP15.81■□□□□ 0.12
USP3-214ENST00000559718 RPS6KA4O75676 772 aa15.81■□□□□ 0.12
USP3-214ENST00000559718 CNGB1Q14028 1251 aaPredicted RBP15.81■□□□□ 0.12
USP3-214ENST00000559718 LGR6Q9HBX8 967 aa15.81■□□□□ 0.12
USP3-214ENST00000559718 SCN11AQ9UI33 1791 aa15.8■□□□□ 0.12
USP3-214ENST00000559718 ATP10DQ9P241 1426 aa15.8■□□□□ 0.12
USP3-214ENST00000559718 GYS1P13807 737 aa15.8■□□□□ 0.12
USP3-214ENST00000559718 CRKLP46109 303 aaKnown RBP15.8■□□□□ 0.12
USP3-214ENST00000559718 AKAP4Q5JQC9 854 aa15.8■□□□□ 0.12
USP3-214ENST00000559718 CICQ96RK0 1608 aaPredicted RBP15.79■□□□□ 0.12
USP3-214ENST00000559718 SENP3-EIF4A1A0A087X0R7 540 aa15.79■□□□□ 0.12
USP3-214ENST00000559718 RFC4P35249 363 aa15.79■□□□□ 0.12
USP3-214ENST00000559718 NLGN1Q8N2Q7 840 aa15.79■□□□□ 0.12
USP3-214ENST00000559718 PXDNLA1KZ92 1463 aa15.78■□□□□ 0.12
USP3-214ENST00000559718 C4AP0C0L4 1744 aa15.78■□□□□ 0.12
USP3-214ENST00000559718 TJP1Q07157 1748 aa15.78■□□□□ 0.12
USP3-214ENST00000559718 SLC52A2Q9HAB3 445 aa15.78■□□□□ 0.12
USP3-214ENST00000559718 SRP68Q9UHB9 627 aaKnown RBP15.78■□□□□ 0.12
USP3-214ENST00000559718 A0A0G2JLW4 131 aa15.77■□□□□ 0.12
USP3-214ENST00000559718 RNMTO43148 476 aaKnown RBP15.77■□□□□ 0.12
USP3-214ENST00000559718 DIAPH1O60610 1272 aaKnown RBP15.77■□□□□ 0.12
USP3-214ENST00000559718 SLC39A6Q13433 755 aa15.77■□□□□ 0.12
USP3-214ENST00000559718 MTHFSDQ2M296 383 aaKnown RBP15.77■□□□□ 0.12
USP3-214ENST00000559718 INTS5Q6P9B9 1019 aaKnown RBP15.77■□□□□ 0.12
USP3-214ENST00000559718 KIF13BQ9NQT8 1826 aa15.77■□□□□ 0.11
USP3-214ENST00000559718 N4BP2Q86UW6 1770 aaPredicted RBP15.77■□□□□ 0.11
USP3-214ENST00000559718 KIAA1551Q9HCM1 1747 aa15.77■□□□□ 0.11
USP3-214ENST00000559718 C10orf71Q711Q0 1435 aa15.77■□□□□ 0.11
USP3-214ENST00000559718 ADCY9O60503 1353 aa15.76■□□□□ 0.11
USP3-214ENST00000559718 DNAJC10Q8IXB1 793 aa15.76■□□□□ 0.11
USP3-214ENST00000559718 REM2Q8IYK8 340 aaPredicted RBP15.76■□□□□ 0.11
USP3-214ENST00000559718 ZNF526Q8TF50 670 aaPredicted RBP15.76■□□□□ 0.11
USP3-214ENST00000559718 FKBP8Q14318 412 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms