RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 STX6O43752 255 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 PDCP20941 246 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 AACSQ86V21 672 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 NEXNQ0ZGT2 675 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 PKP1Q13835 747 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 KRT24Q2M2I5 525 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 TAF3Q5VWG9 929 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 DDX11Q96FC9 970 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 KDM5DQ9BY66 1539 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 IGSF3O75054 1194 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 RAPGEF3O95398 923 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 TNNT1P13805 278 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 CCDC94Q9BW85 323 aaPredicted RBP8.43□□□□□ -1.06
USP3-210ENST00000559192 CGNQ9P2M7 1197 aaKnown RBP8.43□□□□□ -1.06
USP3-210ENST00000559192 CLIP2Q9UDT6 1046 aa8.43□□□□□ -1.06
USP3-210ENST00000559192 ADGRL1O94910 1474 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 ERBB4Q15303 1308 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 FAM177A1Q8N128 213 aaPredicted RBP8.42□□□□□ -1.06
USP3-210ENST00000559192 NEUROD6Q96NK8 337 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 ACBD3Q9H3P7 528 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 LMBRD1Q9NUN5 540 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 VAMP4O75379 141 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 ARHGAP45Q92619 1136 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 PRIMPOLQ96LW4 560 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 NPC1L1Q9UHC9 1359 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 HS1BP3Q53T59 392 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 RIC3Q7Z5B4 369 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 PHACTR3Q96KR7 559 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 DEF6Q9H4E7 631 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 TRMT1Q9NXH9 659 aaKnown RBP8.42□□□□□ -1.06
USP3-210ENST00000559192 EID1Q9Y6B2 187 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 PDE1AP54750 535 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 ESYT1Q9BSJ8 1104 aa8.42□□□□□ -1.06
USP3-210ENST00000559192 ME1P48163 572 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 LIMCH1Q9UPQ0 1083 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 SYNMO15061 1565 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 PRDM15P57071 1507 aaPredicted RBP8.41□□□□□ -1.06
USP3-210ENST00000559192 WDR7Q9Y4E6 1490 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 SYNE3Q6ZMZ3 975 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 ANKRD44Q8N8A2 993 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 TSC1Q92574 1164 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 ZSCAN31Q96LW9 406 aaPredicted RBP8.41□□□□□ -1.06
USP3-210ENST00000559192 POLR1AO95602 1720 aaPredicted RBP8.41□□□□□ -1.06
USP3-210ENST00000559192 EIF4G3O43432 1585 aaKnown RBP8.41□□□□□ -1.06
USP3-210ENST00000559192 DTNBO60941 627 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 ZSCAN22P10073 491 aaPredicted RBP8.41□□□□□ -1.06
USP3-210ENST00000559192 NLRP6P59044 892 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 UBE2HP62256 183 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 UVSSAQ2YD98 709 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 TTLL5Q6EMB2 1281 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 BLOC1S2Q6QNY1 142 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 AK7Q96M32 723 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 A0A1W2PP64 1363 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 ZNF445P59923 1031 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 CEP85Q6P2H3 762 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 LEKR1Q6ZMV7 388 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 CCDC34Q96HJ3 373 aa8.41□□□□□ -1.06
USP3-210ENST00000559192 TFIP11Q9UBB9 837 aaKnown RBP8.41□□□□□ -1.06
USP3-210ENST00000559192 DDX58O95786 925 aaKnown RBP8.4□□□□□ -1.06
USP3-210ENST00000559192 MSH6P52701 1360 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 PTPRCP08575 1304 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 ABCC10Q5T3U5 1492 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 NUDT16Q96DE0 195 aaKnown RBP8.4□□□□□ -1.06
USP3-210ENST00000559192 TRERF1Q96PN7 1200 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 DCTPP1Q9H773 170 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 ZRANB1Q9UGI0 708 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 NECAB1Q8N987 351 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 RASSF8Q8NHQ8 419 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 RUFY1Q96T51 708 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 PPP6R1Q9UPN7 881 aa8.4□□□□□ -1.06
USP3-210ENST00000559192 GADD45BO75293 160 aaPredicted RBP8.4□□□□□ -1.07
USP3-210ENST00000559192 GSPT1P15170 499 aaKnown RBP8.4□□□□□ -1.07
USP3-210ENST00000559192 TMEM63CQ9P1W3 806 aa8.4□□□□□ -1.07
USP3-210ENST00000559192 TRPM1Q7Z4N2 1603 aa8.4□□□□□ -1.07
USP3-210ENST00000559192 HIP1O00291 1037 aa8.4□□□□□ -1.07
USP3-210ENST00000559192 TRIM29Q14134 588 aa8.4□□□□□ -1.07
USP3-210ENST00000559192 ANKRD1Q15327 319 aa8.4□□□□□ -1.07
USP3-210ENST00000559192 PTPN14Q15678 1187 aa8.4□□□□□ -1.07
USP3-210ENST00000559192 DNM1Q05193 864 aaKnown RBP8.39□□□□□ -1.07
USP3-210ENST00000559192 GPT2Q8TD30 523 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 BBXQ8WY36 941 aaPredicted RBP8.39□□□□□ -1.07
USP3-210ENST00000559192 TSPYL1Q9H0U9 437 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 PRM3Q9NNZ6 103 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 STK38Q15208 465 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 OLFM4Q6UX06 510 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 ZNF396Q96N95 335 aaPredicted RBP8.39□□□□□ -1.07
USP3-210ENST00000559192 PPP1R9BQ96SB3 815 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 WASHC4Q2M389 1173 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 NFXL1Q6ZNB6 911 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 ERC1Q8IUD2 1116 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 CEP89Q96ST8 783 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 FANCAO15360 1455 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 PPFIA3O75145 1194 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 SERPINC1P01008 464 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 NEFHP12036 1026 aa8.39□□□□□ -1.07
USP3-210ENST00000559192 PLCH2O75038 1416 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 CDR1P51861 262 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 TMX1Q9H3N1 280 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 RAB11FIP3O75154 756 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 FLIIQ13045 1269 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms