RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 BTBD11A6QL63 1104 aa17.53■□□□□ 0.4
TPM1-215ENST00000558868 HOXB7P09629 217 aa17.53■□□□□ 0.4
TPM1-215ENST00000558868 PHKG2P15735 406 aa17.53■□□□□ 0.4
TPM1-215ENST00000558868 CCDC30Q5VVM6 783 aa17.53■□□□□ 0.4
TPM1-215ENST00000558868 STK31Q9BXU1 1019 aa17.53■□□□□ 0.4
TPM1-215ENST00000558868 COL16A1Q07092 1604 aaPredicted RBP17.52■□□□□ 0.4
TPM1-215ENST00000558868 ITPRIPQ8IWB1 547 aa17.52■□□□□ 0.4
TPM1-215ENST00000558868 TNNQ9UQP3 1299 aa17.52■□□□□ 0.4
TPM1-215ENST00000558868 IL2RBP14784 551 aa17.51■□□□□ 0.39
TPM1-215ENST00000558868 KRT24Q2M2I5 525 aa17.51■□□□□ 0.39
TPM1-215ENST00000558868 DCAF5Q96JK2 942 aa17.51■□□□□ 0.39
TPM1-215ENST00000558868 STRN4Q9NRL3 753 aa17.51■□□□□ 0.39
TPM1-215ENST00000558868 KDM3BQ7LBC6 1761 aa17.51■□□□□ 0.39
TPM1-215ENST00000558868 TMEM57Q8N5G2 664 aa17.5■□□□□ 0.39
TPM1-215ENST00000558868 ZCRB1Q8TBF4 217 aaKnown RBP17.5■□□□□ 0.39
TPM1-215ENST00000558868 ABCC4O15439 1325 aa17.49■□□□□ 0.39
TPM1-215ENST00000558868 KDM2BQ8NHM5 1336 aa17.49■□□□□ 0.39
TPM1-215ENST00000558868 PCDH11XQ9BZA7 1347 aa17.49■□□□□ 0.39
TPM1-215ENST00000558868 PCDH11YQ9BZA8 1340 aa17.49■□□□□ 0.39
TPM1-215ENST00000558868 VIRMAQ69YN4 1812 aaKnown RBP17.49■□□□□ 0.39
TPM1-215ENST00000558868 EIF4A1P60842 406 aaKnown RBP17.49■□□□□ 0.39
TPM1-215ENST00000558868 LARP1Q6PKG0 1096 aaKnown RBP17.49■□□□□ 0.39
TPM1-215ENST00000558868 BTG4Q9NY30 223 aa17.49■□□□□ 0.39
TPM1-215ENST00000558868 SCN11AQ9UI33 1791 aa17.48■□□□□ 0.39
TPM1-215ENST00000558868 TCERG1O14776 1098 aaKnown RBP17.48■□□□□ 0.39
TPM1-215ENST00000558868 SLC4A2P04920 1241 aa17.48■□□□□ 0.39
TPM1-215ENST00000558868 SLC52A2Q9HAB3 445 aa17.48■□□□□ 0.39
TPM1-215ENST00000558868 RWDD1Q9H446 243 aaPredicted RBP17.47■□□□□ 0.39
TPM1-215ENST00000558868 SIPA1L3O60292 1781 aaPredicted RBP17.47■□□□□ 0.39
TPM1-215ENST00000558868 CACNA1FO60840 1977 aa17.47■□□□□ 0.39
TPM1-215ENST00000558868 CYP27B1O15528 508 aa17.46■□□□□ 0.39
TPM1-215ENST00000558868 IFFO2Q5TF58 517 aa17.46■□□□□ 0.39
TPM1-215ENST00000558868 KDM6AO15550 1401 aaPredicted RBP17.46■□□□□ 0.39
TPM1-215ENST00000558868 MRC1P22897 1456 aa17.45■□□□□ 0.38
TPM1-215ENST00000558868 HDGFL1Q5TGJ6 251 aa17.45■□□□□ 0.38
TPM1-215ENST00000558868 INTS3Q68E01 1043 aaKnown RBP17.44■□□□□ 0.38
TPM1-215ENST00000558868 ZBTB40Q9NUA8 1239 aa17.44■□□□□ 0.38
TPM1-215ENST00000558868 CABP4P57796 275 aa17.43■□□□□ 0.38
TPM1-215ENST00000558868 NKX1-1Q15270 411 aaPredicted RBP17.43■□□□□ 0.38
TPM1-215ENST00000558868 HEG1Q9ULI3 1381 aa17.42■□□□□ 0.38
TPM1-215ENST00000558868 ERVV-2B6SEH9 535 aa17.42■□□□□ 0.38
TPM1-215ENST00000558868 CDCA7Q9BWT1 371 aaPredicted RBP17.42■□□□□ 0.38
TPM1-215ENST00000558868 PCDHB15Q9Y5E8 787 aa17.42■□□□□ 0.38
TPM1-215ENST00000558868 ZBTB7BO15156 539 aaPredicted RBP17.41■□□□□ 0.38
TPM1-215ENST00000558868 CCT4P50991 539 aaKnown RBP17.41■□□□□ 0.38
TPM1-215ENST00000558868 ZNF790Q6PG37 636 aa17.41■□□□□ 0.38
TPM1-215ENST00000558868 TTC5Q8N0Z6 440 aa17.41■□□□□ 0.38
TPM1-215ENST00000558868 NFATC2IPQ8NCF5 419 aa17.41■□□□□ 0.38
TPM1-215ENST00000558868 JCADQ9P266 1359 aa17.4■□□□□ 0.38
TPM1-215ENST00000558868 KCNQ3O43525 872 aa17.4■□□□□ 0.38
TPM1-215ENST00000558868 GIGYF1O75420 1035 aaPredicted RBP17.4■□□□□ 0.38
TPM1-215ENST00000558868 ADAMTS2O95450 1211 aa17.4■□□□□ 0.38
TPM1-215ENST00000558868 FLIIQ13045 1269 aa17.4■□□□□ 0.38
TPM1-215ENST00000558868 HDAC1Q13547 482 aaPredicted RBP17.4■□□□□ 0.38
TPM1-215ENST00000558868 THRAP3Q9Y2W1 955 aaKnown RBP17.4■□□□□ 0.38
TPM1-215ENST00000558868 RGS12O14924 1447 aa17.39■□□□□ 0.38
TPM1-215ENST00000558868 PLCH1Q4KWH8 1693 aa17.39■□□□□ 0.37
TPM1-215ENST00000558868 IGHDP01880 384 aa17.39■□□□□ 0.37
TPM1-215ENST00000558868 EIF2S2P20042 333 aaKnown RBP17.39■□□□□ 0.37
TPM1-215ENST00000558868 TSHZ2Q9NRE2 1034 aa17.39■□□□□ 0.37
TPM1-215ENST00000558868 DBF4Q9UBU7 674 aaPredicted RBP17.39■□□□□ 0.37
TPM1-215ENST00000558868 NUTM2BA6NNL0 878 aaPredicted RBP17.38■□□□□ 0.37
TPM1-215ENST00000558868 NUTM2EB1AL46 878 aaPredicted RBP17.38■□□□□ 0.37
TPM1-215ENST00000558868 FKBP5Q13451 457 aaPredicted RBP17.38■□□□□ 0.37
TPM1-215ENST00000558868 G2E3Q7L622 706 aa17.38■□□□□ 0.37
TPM1-215ENST00000558868 NUTM2AQ8IVF1 878 aaPredicted RBP17.38■□□□□ 0.37
TPM1-215ENST00000558868 NECTIN2Q92692 538 aa17.38■□□□□ 0.37
TPM1-215ENST00000558868 USP35Q9P2H5 1018 aa17.38■□□□□ 0.37
TPM1-215ENST00000558868 NWD2Q9ULI1 1742 aa17.38■□□□□ 0.37
TPM1-215ENST00000558868 DISP2A7MBM2 1401 aa17.38■□□□□ 0.37
TPM1-215ENST00000558868 DDX54Q8TDD1 881 aaKnown RBP17.37■□□□□ 0.37
TPM1-215ENST00000558868 FMNL2Q96PY5 1086 aa17.37■□□□□ 0.37
TPM1-215ENST00000558868 PXDNLA1KZ92 1463 aa17.37■□□□□ 0.37
TPM1-215ENST00000558868 HYPKQ9NX55 129 aa17.36■□□□□ 0.37
TPM1-215ENST00000558868 NRAPQ86VF7 1730 aa17.35■□□□□ 0.37
TPM1-215ENST00000558868 EXOC5O00471 708 aa17.35■□□□□ 0.37
TPM1-215ENST00000558868 SNRPA1P09661 255 aaKnown RBP17.35■□□□□ 0.37
TPM1-215ENST00000558868 SPATA31A6Q5VVP1 1343 aa17.35■□□□□ 0.37
TPM1-215ENST00000558868 SHANK3Q9BYB0 1731 aa17.35■□□□□ 0.37
TPM1-215ENST00000558868 SLC39A6Q13433 755 aa17.34■□□□□ 0.37
TPM1-215ENST00000558868 SPATA31A1Q5TZJ5 1347 aa17.34■□□□□ 0.37
TPM1-215ENST00000558868 CHPF2Q9P2E5 772 aa17.34■□□□□ 0.37
TPM1-215ENST00000558868 SLIT2O94813 1529 aa17.33■□□□□ 0.37
TPM1-215ENST00000558868 SLC4A10Q6U841 1118 aa17.33■□□□□ 0.36
TPM1-215ENST00000558868 DDX21Q9NR30 783 aaKnown RBP eCLIP17.33■□□□□ 0.36
TPM1-215ENST00000558868 WNK3Q9BYP7 1800 aa17.33■□□□□ 0.36
TPM1-215ENST00000558868 LRP6O75581 1613 aa17.32■□□□□ 0.36
TPM1-215ENST00000558868 ZNF496Q96IT1 587 aaPredicted RBP17.32■□□□□ 0.36
TPM1-215ENST00000558868 TNS2Q63HR2 1409 aa17.31■□□□□ 0.36
TPM1-215ENST00000558868 SPATA31A5Q5VU36 1347 aa17.31■□□□□ 0.36
TPM1-215ENST00000558868 SPATA31A7Q8IWB4 1347 aa17.31■□□□□ 0.36
TPM1-215ENST00000558868 F6X3S4 739 aa17.31■□□□□ 0.36
TPM1-215ENST00000558868 DDX58O95786 925 aaKnown RBP17.31■□□□□ 0.36
TPM1-215ENST00000558868 GNAI3P08754 354 aa17.31■□□□□ 0.36
TPM1-215ENST00000558868 RPAP2Q8IXW5 612 aaPredicted RBP17.31■□□□□ 0.36
TPM1-215ENST00000558868 TMOD3Q9NYL9 352 aa17.31■□□□□ 0.36
TPM1-215ENST00000558868 N4BP2Q86UW6 1770 aaPredicted RBP17.3■□□□□ 0.36
TPM1-215ENST00000558868 BARGINQ6ZT62 677 aa17.3■□□□□ 0.36
TPM1-215ENST00000558868 UNC5CLQ8IV45 518 aa17.3■□□□□ 0.36
TPM1-215ENST00000558868 SMC5Q8IY18 1101 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms