RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 INTS3Q68E01 1043 aaKnown RBP10.44□□□□□ -0.74
SPG11-209ENST00000558253 SKAP1Q86WV1 359 aa10.44□□□□□ -0.74
SPG11-209ENST00000558253 ANKLE2Q86XL3 938 aa10.44□□□□□ -0.74
SPG11-209ENST00000558253 RTF1Q92541 710 aaKnown RBP10.44□□□□□ -0.74
SPG11-209ENST00000558253 TBC1D32Q96NH3 1257 aa10.44□□□□□ -0.74
SPG11-209ENST00000558253 TNNQ9UQP3 1299 aa10.44□□□□□ -0.74
SPG11-209ENST00000558253 RTL1A6NKG5 1358 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 NCKAP5LQ9HCH0 1330 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 VIRMAQ69YN4 1812 aaKnown RBP10.43□□□□□ -0.74
SPG11-209ENST00000558253 CEBPAP49715 358 aaPredicted RBP10.43□□□□□ -0.74
SPG11-209ENST00000558253 NLRP6P59044 892 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 LCE2DQ5TA82 110 aaPredicted RBP10.43□□□□□ -0.74
SPG11-209ENST00000558253 CHD1LQ86WJ1 897 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 FBXO22Q8NEZ5 403 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 MFRPQ9BY79 579 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 PHF8Q9UPP1 1060 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 FER1L4A9Z1Z3 1794 aa10.43□□□□□ -0.74
SPG11-209ENST00000558253 XRN1Q8IZH2 1706 aaKnown RBP10.43□□□□□ -0.74
SPG11-209ENST00000558253 USP19O94966 1318 aa10.42□□□□□ -0.74
SPG11-209ENST00000558253 IGSF1Q8N6C5 1336 aa10.42□□□□□ -0.74
SPG11-209ENST00000558253 FBLN1P23142 703 aa10.42□□□□□ -0.74
SPG11-209ENST00000558253 NBR1Q14596 966 aa10.42□□□□□ -0.74
SPG11-209ENST00000558253 BMP2KLQ5H9B9 411 aa10.42□□□□□ -0.74
SPG11-209ENST00000558253 RPAP2Q8IXW5 612 aaPredicted RBP10.42□□□□□ -0.74
SPG11-209ENST00000558253 RGPD1P0DJD0 1748 aa10.41□□□□□ -0.74
SPG11-209ENST00000558253 MAP3K19Q56UN5 1328 aa10.41□□□□□ -0.74
SPG11-209ENST00000558253 AMPHP49418 695 aa10.41□□□□□ -0.74
SPG11-209ENST00000558253 HSP90AB2PQ58FF8 381 aa10.41□□□□□ -0.74
SPG11-209ENST00000558253 C8orf58Q8NAV2 365 aa10.41□□□□□ -0.74
SPG11-209ENST00000558253 MS4A4AQ96JQ5 239 aa10.41□□□□□ -0.74
SPG11-209ENST00000558253 USP54Q70EL1 1684 aa10.41□□□□□ -0.74
SPG11-209ENST00000558253 CEP170BQ9Y4F5 1589 aaPredicted RBP10.4□□□□□ -0.74
SPG11-209ENST00000558253 DEKP35659 375 aaKnown RBP10.4□□□□□ -0.74
SPG11-209ENST00000558253 NKX1-1Q15270 411 aaPredicted RBP10.4□□□□□ -0.74
SPG11-209ENST00000558253 TSPYL6Q8N831 410 aa10.4□□□□□ -0.74
SPG11-209ENST00000558253 THUMPD2Q9BTF0 503 aaKnown RBP10.4□□□□□ -0.74
SPG11-209ENST00000558253 CRB1P82279 1406 aa10.4□□□□□ -0.75
SPG11-209ENST00000558253 CCT4P50991 539 aaKnown RBP10.39□□□□□ -0.75
SPG11-209ENST00000558253 DPY19L2Q6NUT2 758 aa10.39□□□□□ -0.75
SPG11-209ENST00000558253 KCNH5Q8NCM2 988 aa10.39□□□□□ -0.75
SPG11-209ENST00000558253 HMMRO75330 724 aa10.38□□□□□ -0.75
SPG11-209ENST00000558253 KCNA6P17658 529 aa10.38□□□□□ -0.75
SPG11-209ENST00000558253 AEBP1Q8IUX7 1158 aa10.38□□□□□ -0.75
SPG11-209ENST00000558253 L3MBTL3Q96JM7 780 aaPredicted RBP10.38□□□□□ -0.75
SPG11-209ENST00000558253 C22orf23Q9BZE7 217 aa10.38□□□□□ -0.75
SPG11-209ENST00000558253 GNAT3A8MTJ3 354 aa10.37□□□□□ -0.75
SPG11-209ENST00000558253 HOXC9P31274 260 aa10.37□□□□□ -0.75
SPG11-209ENST00000558253 RBM25P49756 843 aaKnown RBP10.37□□□□□ -0.75
SPG11-209ENST00000558253 ANKRD44Q8N8A2 993 aa10.37□□□□□ -0.75
SPG11-209ENST00000558253 IL27Q8NEV9 243 aa10.37□□□□□ -0.75
SPG11-209ENST00000558253 DCTPP1Q9H773 170 aa10.37□□□□□ -0.75
SPG11-209ENST00000558253 ADGRL3Q9HAR2 1447 aa10.37□□□□□ -0.75
SPG11-209ENST00000558253 FMN2Q9NZ56 1722 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 FAM83GA6ND36 823 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 NFKBIBQ15653 356 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 MTHFSDQ2M296 383 aaKnown RBP10.36□□□□□ -0.75
SPG11-209ENST00000558253 ANKRD45Q5TZF3 282 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 CCDC30Q5VVM6 783 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 ABTB2Q8N961 1025 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 BBXQ8WY36 941 aaPredicted RBP10.36□□□□□ -0.75
SPG11-209ENST00000558253 EYA1Q99502 592 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 STK31Q9BXU1 1019 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 TSPYL4Q9UJ04 414 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 PEAK1Q9H792 1746 aa10.36□□□□□ -0.75
SPG11-209ENST00000558253 ZNF142P52746 1687 aaPredicted RBP10.35□□□□□ -0.75
SPG11-209ENST00000558253 ELL2O00472 640 aaPredicted RBP10.35□□□□□ -0.75
SPG11-209ENST00000558253 HOXB7P09629 217 aa10.35□□□□□ -0.75
SPG11-209ENST00000558253 SLAIN1Q8ND83 568 aa10.35□□□□□ -0.75
SPG11-209ENST00000558253 IP6K1Q92551 441 aa10.35□□□□□ -0.75
SPG11-209ENST00000558253 SNX21Q969T3 373 aa10.35□□□□□ -0.75
SPG11-209ENST00000558253 PCDH10Q9P2E7 1040 aa10.35□□□□□ -0.75
SPG11-209ENST00000558253 DLG5Q8TDM6 1919 aa10.35□□□□□ -0.75
SPG11-209ENST00000558253 NUTM2FA1L443 756 aa10.34□□□□□ -0.75
SPG11-209ENST00000558253 DCTN1Q14203 1278 aa10.34□□□□□ -0.75
SPG11-209ENST00000558253 TAF7Q15545 349 aaPredicted RBP10.34□□□□□ -0.75
SPG11-209ENST00000558253 MCM10Q7L590 875 aa10.34□□□□□ -0.75
SPG11-209ENST00000558253 LNPKQ9C0E8 428 aa10.34□□□□□ -0.75
SPG11-209ENST00000558253 RYDENQ9NUL5 291 aaKnown RBP10.34□□□□□ -0.75
SPG11-209ENST00000558253 MAP3K5Q99683 1374 aa10.34□□□□□ -0.75
SPG11-209ENST00000558253 PIK3C2AO00443 1686 aa10.34□□□□□ -0.75
SPG11-209ENST00000558253 GNAI3P08754 354 aa10.33□□□□□ -0.76
SPG11-209ENST00000558253 CASC1Q6TDU7 716 aa10.33□□□□□ -0.76
SPG11-209ENST00000558253 SIRT2Q8IXJ6 389 aa10.33□□□□□ -0.76
SPG11-209ENST00000558253 TMEM121BQ9BXQ6 578 aaPredicted RBP10.33□□□□□ -0.76
SPG11-209ENST00000558253 BOLA1Q9Y3E2 137 aa10.33□□□□□ -0.76
SPG11-209ENST00000558253 PLEKHG2Q9H7P9 1386 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 CDC45O75419 566 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 PSME1Q06323 249 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 AMOTQ4VCS5 1084 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 HSCBQ8IWL3 235 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 TBC1D2Q9BYX2 928 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 HDAC5Q9UQL6 1122 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 RGS12O14924 1447 aa10.32□□□□□ -0.76
SPG11-209ENST00000558253 CHD2O14647 1828 aaKnown RBP10.31□□□□□ -0.76
SPG11-209ENST00000558253 GTPBP6O43824 516 aaPredicted RBP10.31□□□□□ -0.76
SPG11-209ENST00000558253 PTMSP20962 102 aa10.31□□□□□ -0.76
SPG11-209ENST00000558253 SLC4A3P48751 1232 aa10.31□□□□□ -0.76
SPG11-209ENST00000558253 MFAP1P55081 439 aaKnown RBP10.31□□□□□ -0.76
SPG11-209ENST00000558253 CEP85Q6P2H3 762 aa10.31□□□□□ -0.76
SPG11-209ENST00000558253 ANTXR1Q9H6X2 564 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms