RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ITPK1Q13572 414 aa17.44■□□□□ 0.38
SHMT2-230ENST00000557427 RAPGEF4Q8WZA2 1011 aa17.44■□□□□ 0.38
SHMT2-230ENST00000557427 LOC102724428A0A0B4J2F2 783 aa17.43■□□□□ 0.38
SHMT2-230ENST00000557427 GNPATO15228 680 aa17.43■□□□□ 0.38
SHMT2-230ENST00000557427 SIK1P57059 783 aa17.43■□□□□ 0.38
SHMT2-230ENST00000557427 TIMELESSQ9UNS1 1208 aa17.43■□□□□ 0.38
SHMT2-230ENST00000557427 PCDH11XQ9BZA7 1347 aa17.43■□□□□ 0.38
SHMT2-230ENST00000557427 PCDH11YQ9BZA8 1340 aa17.43■□□□□ 0.38
SHMT2-230ENST00000557427 PLEKHG2Q9H7P9 1386 aa17.42■□□□□ 0.38
SHMT2-230ENST00000557427 PKD1L3Q7Z443 1732 aa17.42■□□□□ 0.38
SHMT2-230ENST00000557427 TATP17735 454 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-230ENST00000557427 KDM2BQ8NHM5 1336 aa17.42■□□□□ 0.38
SHMT2-230ENST00000557427 SMC1BQ8NDV3 1235 aa17.41■□□□□ 0.38
SHMT2-230ENST00000557427 RRS1Q15050 365 aaKnown RBP17.4■□□□□ 0.38
SHMT2-230ENST00000557427 TERF2IPQ9NYB0 399 aa17.4■□□□□ 0.38
SHMT2-230ENST00000557427 COG3Q96JB2 828 aa17.39■□□□□ 0.37
SHMT2-230ENST00000557427 DCAF5Q96JK2 942 aa17.39■□□□□ 0.37
SHMT2-230ENST00000557427 RNF181Q9P0P0 153 aa17.39■□□□□ 0.37
SHMT2-230ENST00000557427 ARFGEF1Q9Y6D6 1849 aa17.39■□□□□ 0.37
SHMT2-230ENST00000557427 ASAP1Q9ULH1 1129 aa17.38■□□□□ 0.37
SHMT2-230ENST00000557427 TNRC6CQ9HCJ0 1690 aaKnown RBP17.38■□□□□ 0.37
SHMT2-230ENST00000557427 RTL1A6NKG5 1358 aa17.38■□□□□ 0.37
SHMT2-230ENST00000557427 TMF1P82094 1093 aa17.37■□□□□ 0.37
SHMT2-230ENST00000557427 NKX1-1Q15270 411 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-230ENST00000557427 NLGN1Q8N2Q7 840 aa17.37■□□□□ 0.37
SHMT2-230ENST00000557427 C4AP0C0L4 1744 aa17.36■□□□□ 0.37
SHMT2-230ENST00000557427 SBF1O95248 1867 aa17.36■□□□□ 0.37
SHMT2-230ENST00000557427 ST20-MTHFSA0A0A6YYL1 179 aa17.36■□□□□ 0.37
SHMT2-230ENST00000557427 ATP6V1AP38606 617 aa17.36■□□□□ 0.37
SHMT2-230ENST00000557427 CCDC87Q9NVE4 849 aa17.36■□□□□ 0.37
SHMT2-230ENST00000557427 GYS1P13807 737 aa17.35■□□□□ 0.37
SHMT2-230ENST00000557427 HSP90AB2PQ58FF8 381 aa17.35■□□□□ 0.37
SHMT2-230ENST00000557427 DIEXFQ68CQ4 756 aaKnown RBP17.35■□□□□ 0.37
SHMT2-230ENST00000557427 PIM2Q9P1W9 311 aa17.35■□□□□ 0.37
SHMT2-230ENST00000557427 TRAPPC3LQ5T215 181 aa17.34■□□□□ 0.37
SHMT2-230ENST00000557427 ARHGEF1Q92888 912 aaKnown RBP17.34■□□□□ 0.37
SHMT2-230ENST00000557427 SLC4A9Q96Q91 983 aa17.33■□□□□ 0.36
SHMT2-230ENST00000557427 ATG3Q9NT62 314 aa17.33■□□□□ 0.36
SHMT2-230ENST00000557427 DALRD3Q5D0E6 543 aaKnown RBP17.32■□□□□ 0.36
SHMT2-230ENST00000557427 RTCBQ9Y3I0 505 aaKnown RBP17.32■□□□□ 0.36
SHMT2-230ENST00000557427 SMG6Q86US8 1419 aaKnown RBP17.31■□□□□ 0.36
SHMT2-230ENST00000557427 INSRP06213 1382 aa17.31■□□□□ 0.36
SHMT2-230ENST00000557427 PARP3Q9Y6F1 533 aa17.31■□□□□ 0.36
SHMT2-230ENST00000557427 CHRNA5P30532 468 aa17.3■□□□□ 0.36
SHMT2-230ENST00000557427 PUS7Q96PZ0 661 aaKnown RBP17.3■□□□□ 0.36
SHMT2-230ENST00000557427 TMOD3Q9NYL9 352 aa17.3■□□□□ 0.36
SHMT2-230ENST00000557427 KDRP35968 1356 aa17.29■□□□□ 0.36
SHMT2-230ENST00000557427 POTECB2RU33 542 aa17.29■□□□□ 0.36
SHMT2-230ENST00000557427 FYB1O15117 783 aa17.29■□□□□ 0.36
SHMT2-230ENST00000557427 FOXN1O15353 648 aa17.29■□□□□ 0.36
SHMT2-230ENST00000557427 VEGFAP15692 232 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-230ENST00000557427 RASSF7Q02833 373 aa17.29■□□□□ 0.36
SHMT2-230ENST00000557427 TESK2Q96S53 571 aa17.29■□□□□ 0.36
SHMT2-230ENST00000557427 GGNBP2Q9H3C7 697 aa17.29■□□□□ 0.36
SHMT2-230ENST00000557427 KDM6AO15550 1401 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-230ENST00000557427 GLTPD2A6NH11 291 aa17.28■□□□□ 0.36
SHMT2-230ENST00000557427 ADRA2BP18089 450 aa17.27■□□□□ 0.36
SHMT2-230ENST00000557427 DDR1Q08345 913 aa17.27■□□□□ 0.36
SHMT2-230ENST00000557427 NCAPD2Q15021 1401 aa17.27■□□□□ 0.35
SHMT2-230ENST00000557427 RPS6KA4O75676 772 aa17.26■□□□□ 0.35
SHMT2-230ENST00000557427 RFC4P35249 363 aa17.26■□□□□ 0.35
SHMT2-230ENST00000557427 RC3H1Q5TC82 1133 aaKnown RBP17.26■□□□□ 0.35
SHMT2-230ENST00000557427 MKRN1Q9UHC7 482 aaKnown RBP17.26■□□□□ 0.35
SHMT2-230ENST00000557427 ZC3H4Q9UPT8 1303 aaKnown RBP17.25■□□□□ 0.35
SHMT2-230ENST00000557427 FKBP8Q14318 412 aa17.25■□□□□ 0.35
SHMT2-230ENST00000557427 CNTNAP4Q9C0A0 1308 aa17.24■□□□□ 0.35
SHMT2-230ENST00000557427 MYH14Q7Z406 1995 aaKnown RBP17.24■□□□□ 0.35
SHMT2-230ENST00000557427 SLC24A1O60721 1099 aa17.24■□□□□ 0.35
SHMT2-230ENST00000557427 PHKG2P15735 406 aa17.24■□□□□ 0.35
SHMT2-230ENST00000557427 FAM161AQ3B820 660 aa17.24■□□□□ 0.35
SHMT2-230ENST00000557427 PRDM10Q9NQV6 1147 aa17.24■□□□□ 0.35
SHMT2-230ENST00000557427 SRP68Q9UHB9 627 aaKnown RBP17.24■□□□□ 0.35
SHMT2-230ENST00000557427 SPG7Q9UQ90 795 aa17.24■□□□□ 0.35
SHMT2-230ENST00000557427 FLT4P35916 1363 aa17.24■□□□□ 0.35
SHMT2-230ENST00000557427 COL5A3P25940 1745 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-230ENST00000557427 PCDH10Q9P2E7 1040 aa17.23■□□□□ 0.35
SHMT2-230ENST00000557427 LMNB1P20700 586 aa17.22■□□□□ 0.35
SHMT2-230ENST00000557427 RBM42Q9BTD8 480 aaKnown RBP17.22■□□□□ 0.35
SHMT2-230ENST00000557427 CREBZFQ9NS37 354 aa17.22■□□□□ 0.35
SHMT2-230ENST00000557427 ZNF831Q5JPB2 1677 aa17.22■□□□□ 0.35
SHMT2-230ENST00000557427 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHMT2-230ENST00000557427 EMILIN1Q9Y6C2 1016 aa17.21■□□□□ 0.35
SHMT2-230ENST00000557427 KIF24Q5T7B8 1368 aa17.2■□□□□ 0.34
SHMT2-230ENST00000557427 POLRMTO00411 1230 aaKnown RBP17.2■□□□□ 0.34
SHMT2-230ENST00000557427 IFNL2Q8IZJ0 200 aa17.2■□□□□ 0.34
SHMT2-230ENST00000557427 TM4SF1P30408 202 aa17.19■□□□□ 0.34
SHMT2-230ENST00000557427 EYA1Q99502 592 aa17.19■□□□□ 0.34
SHMT2-230ENST00000557427 USP42Q9H9J4 1324 aaKnown RBP17.19■□□□□ 0.34
SHMT2-230ENST00000557427 POTEIP0CG38 1075 aa17.18■□□□□ 0.34
SHMT2-230ENST00000557427 POTEJP0CG39 1038 aa17.18■□□□□ 0.34
SHMT2-230ENST00000557427 TIAM2Q8IVF5 1701 aa17.18■□□□□ 0.34
SHMT2-230ENST00000557427 CNTNAP1P78357 1384 aa17.17■□□□□ 0.34
SHMT2-230ENST00000557427 NFKBIEO00221 500 aa17.17■□□□□ 0.34
SHMT2-230ENST00000557427 CCDC88AQ3V6T2 1871 aa17.17■□□□□ 0.34
SHMT2-230ENST00000557427 ABHD8Q96I13 439 aa17.17■□□□□ 0.34
SHMT2-230ENST00000557427 CTCFP49711 727 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-230ENST00000557427 LBX1P52954 281 aa17.16■□□□□ 0.34
SHMT2-230ENST00000557427 POLR3GLQ9BT43 218 aa17.16■□□□□ 0.34
SHMT2-230ENST00000557427 CRKLP46109 303 aaKnown RBP17.15■□□□□ 0.34
SHMT2-230ENST00000557427 CDCA8Q53HL2 280 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms