RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 VPS72Q15906 364 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 NGDNQ8NEJ9 315 aaKnown RBP6.62□□□□□ -1.35
USP28-213ENST00000544967 PMFBP1Q8TBY8 1022 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 CC2D2BQ6DHV5 1058 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 BARGINQ6ZT62 677 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 CRBNQ96SW2 442 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 SPATA31A5Q5VU36 1347 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 SPATA31A7Q8IWB4 1347 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 C5P01031 1676 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 PIP4K2BP78356 416 aa6.62□□□□□ -1.35
USP28-213ENST00000544967 THRAP3Q9Y2W1 955 aaKnown RBP6.62□□□□□ -1.35
USP28-213ENST00000544967 TAF1LQ8IZX4 1826 aa6.61□□□□□ -1.35
USP28-213ENST00000544967 GCP02774 474 aa6.61□□□□□ -1.35
USP28-213ENST00000544967 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.61□□□□□ -1.35
USP28-213ENST00000544967 LAMB4A4D0S4 1761 aa6.61□□□□□ -1.35
USP28-213ENST00000544967 PANK3Q9H999 370 aa6.61□□□□□ -1.35
USP28-213ENST00000544967 SKOR2Q2VWA4 1001 aaPredicted RBP6.6□□□□□ -1.35
USP28-213ENST00000544967 NME9Q86XW9 330 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 TEX2Q8IWB9 1127 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 PPP1R9BQ96SB3 815 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 BTAF1O14981 1849 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 WDR17Q8IZU2 1322 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 OFD1O75665 1012 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 MCM4P33991 863 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 IP6K1Q92551 441 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 MYH16Q9H6N6 1097 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 ERBB3P21860 1342 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 SPATA31A1Q5TZJ5 1347 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 ZNF521Q96K83 1311 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 FAM83GA6ND36 823 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 ZNF772Q68DY9 489 aaPredicted RBP6.6□□□□□ -1.35
USP28-213ENST00000544967 SPRYD3Q8NCJ5 442 aa6.6□□□□□ -1.35
USP28-213ENST00000544967 CIZ1Q9ULV3 898 aaPredicted RBP6.6□□□□□ -1.35
USP28-213ENST00000544967 CCDC173Q0VFZ6 552 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 UNC5CLQ8IV45 518 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 TJP1Q07157 1748 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 APBB1O00213 710 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 GRPEL1Q9HAV7 217 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 CHMP5Q9NZZ3 219 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 NAP1L2Q9ULW6 460 aaPredicted RBP6.59□□□□□ -1.35
USP28-213ENST00000544967 MEGF6O75095 1541 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 MAP3K19Q56UN5 1328 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 IGSF1Q8N6C5 1336 aa6.59□□□□□ -1.35
USP28-213ENST00000544967 CASZ1Q86V15 1759 aa6.59□□□□□ -1.36
USP28-213ENST00000544967 KDM4AO75164 1064 aa6.59□□□□□ -1.36
USP28-213ENST00000544967 MCM5P33992 734 aa6.59□□□□□ -1.36
USP28-213ENST00000544967 CCDC27Q2M243 656 aa6.59□□□□□ -1.36
USP28-213ENST00000544967 ABTB2Q8N961 1025 aa6.59□□□□□ -1.36
USP28-213ENST00000544967 TUBGCP6Q96RT7 1819 aa6.59□□□□□ -1.36
USP28-213ENST00000544967 TRMT2AQ8IZ69 625 aaKnown RBP6.58□□□□□ -1.36
USP28-213ENST00000544967 TBC1D32Q96NH3 1257 aa6.58□□□□□ -1.36
USP28-213ENST00000544967 HOXC9P31274 260 aa6.58□□□□□ -1.36
USP28-213ENST00000544967 NEUROD2Q15784 382 aa6.58□□□□□ -1.36
USP28-213ENST00000544967 AFF2P51816 1311 aa6.58□□□□□ -1.36
USP28-213ENST00000544967 CARD10Q9BWT7 1032 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 UPF2Q9HAU5 1272 aaKnown RBP6.57□□□□□ -1.36
USP28-213ENST00000544967 POLKQ9UBT6 870 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 SOCS7O14512 581 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 PDE3AQ14432 1141 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 SECISBP2LQ93073 1101 aaKnown RBP6.57□□□□□ -1.36
USP28-213ENST00000544967 COG3Q96JB2 828 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 N4BP2Q86UW6 1770 aaPredicted RBP6.57□□□□□ -1.36
USP28-213ENST00000544967 DYNC1I1O14576 645 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 CHRM1P11229 460 aaPredicted RBP6.57□□□□□ -1.36
USP28-213ENST00000544967 TAF3Q5VWG9 929 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 FAM43BQ6ZT52 329 aaPredicted RBP6.57□□□□□ -1.36
USP28-213ENST00000544967 ZSCAN30Q86W11 494 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 CDCA7Q9BWT1 371 aaPredicted RBP6.57□□□□□ -1.36
USP28-213ENST00000544967 KCNG1Q9UIX4 513 aa6.57□□□□□ -1.36
USP28-213ENST00000544967 ZNF500O60304 480 aaPredicted RBP6.56□□□□□ -1.36
USP28-213ENST00000544967 CLEC17AQ6ZS10 378 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 TRIM44Q96DX7 344 aaPredicted RBP6.56□□□□□ -1.36
USP28-213ENST00000544967 PLCD4Q9BRC7 762 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 ZRANB1Q9UGI0 708 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 NUTM2FA1L443 756 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 NLRP6P59044 892 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 XPCQ01831 940 aaPredicted RBP6.56□□□□□ -1.36
USP28-213ENST00000544967 CSPP1Q1MSJ5 1256 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 TRPC5Q9UL62 973 aaPredicted RBP6.56□□□□□ -1.36
USP28-213ENST00000544967 AXIN2Q9Y2T1 843 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 TRAK2O60296 914 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 DDIT3P35638 169 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 SLC4A3P48751 1232 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 AEBP1Q8IUX7 1158 aa6.56□□□□□ -1.36
USP28-213ENST00000544967 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.56□□□□□ -1.362e-6■■■■□ 22.1
USP28-213ENST00000544967 KIF20AO95235 890 aa6.55□□□□□ -1.36
USP28-213ENST00000544967 MFAP1P55081 439 aaKnown RBP6.55□□□□□ -1.36
USP28-213ENST00000544967 DUSP27Q5VZP5 1158 aa6.55□□□□□ -1.36
USP28-213ENST00000544967 IL13P35225 146 aa6.55□□□□□ -1.36
USP28-213ENST00000544967 GTPBP4Q9BZE4 634 aaKnown RBP6.55□□□□□ -1.36
USP28-213ENST00000544967 BCORQ6W2J9 1755 aa6.55□□□□□ -1.36
USP28-213ENST00000544967 LRP5O75197 1615 aa6.54□□□□□ -1.36
USP28-213ENST00000544967 RBM6P78332 1123 aaKnown RBP6.54□□□□□ -1.36
USP28-213ENST00000544967 DMTNQ08495 405 aa6.54□□□□□ -1.36
USP28-213ENST00000544967 KIAA1211Q6ZU35 1233 aa6.54□□□□□ -1.36
USP28-213ENST00000544967 SNX21Q969T3 373 aa6.54□□□□□ -1.36
USP28-213ENST00000544967 GJD4Q96KN9 370 aaPredicted RBP6.54□□□□□ -1.36
USP28-213ENST00000544967 KNSTRNQ9Y448 316 aa6.54□□□□□ -1.36
USP28-213ENST00000544967 ERBB4Q15303 1308 aa6.54□□□□□ -1.36
USP28-213ENST00000544967 NKX1-1Q15270 411 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms