RNA–Protein interactions for RNA: ENST00000543449.1

NPIPB4-217, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 685 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-217	ENST00000543449	SSFA2	P28290	1259 aa		13.75	□□□□□ -0.21
NPIPB4-217	ENST00000543449	KCNQ4	P56696	695 aa		13.75	□□□□□ -0.21
NPIPB4-217	ENST00000543449	ARX	Q96QS3	562 aa		13.75	□□□□□ -0.21
NPIPB4-217	ENST00000543449	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.75	□□□□□ -0.21
NPIPB4-217	ENST00000543449	C5	P01031	1676 aa		13.75	□□□□□ -0.21
NPIPB4-217	ENST00000543449	RALBP1	Q15311	655 aa		13.74	□□□□□ -0.21
NPIPB4-217	ENST00000543449	SGIP1	Q9BQI5	828 aa		13.74	□□□□□ -0.21
NPIPB4-217	ENST00000543449	PNN	Q9H307	717 aa	Known RBP	13.74	□□□□□ -0.21
NPIPB4-217	ENST00000543449	SLC52A2	Q9HAB3	445 aa		13.74	□□□□□ -0.21
NPIPB4-217	ENST00000543449	MAP3K5	Q99683	1374 aa		13.73	□□□□□ -0.21
NPIPB4-217	ENST00000543449	RNMT	O43148	476 aa	Known RBP	13.73	□□□□□ -0.21
NPIPB4-217	ENST00000543449	FCHSD2	O94868	740 aa		13.73	□□□□□ -0.21
NPIPB4-217	ENST00000543449	MTHFSD	Q2M296	383 aa	Known RBP	13.73	□□□□□ -0.21
NPIPB4-217	ENST00000543449	RC3H1	Q5TC82	1133 aa	Known RBP	13.73	□□□□□ -0.21
NPIPB4-217	ENST00000543449	NFATC2IP	Q8NCF5	419 aa		13.73	□□□□□ -0.21
NPIPB4-217	ENST00000543449	RBM42	Q9BTD8	480 aa	Known RBP	13.73	□□□□□ -0.21
NPIPB4-217	ENST00000543449	ZNF831	Q5JPB2	1677 aa		13.72	□□□□□ -0.21
NPIPB4-217	ENST00000543449	GNAT3	A8MTJ3	354 aa		13.72	□□□□□ -0.21
NPIPB4-217	ENST00000543449	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.72	□□□□□ -0.21
NPIPB4-217	ENST00000543449	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
NPIPB4-217	ENST00000543449	COL23A1	Q86Y22	540 aa	Predicted RBP	13.72	□□□□□ -0.21
NPIPB4-217	ENST00000543449	C4B	P0C0L5	1744 aa		13.72	□□□□□ -0.21
NPIPB4-217	ENST00000543449	TAF1L	Q8IZX4	1826 aa		13.71	□□□□□ -0.22
NPIPB4-217	ENST00000543449	CNTNAP4	Q9C0A0	1308 aa		13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	MRC1	P22897	1456 aa		13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	GNPAT	O15228	680 aa		13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	PRKAR2B	P31323	418 aa		13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	TEF	Q10587	303 aa		13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	LINC00116	Q8NCU8	138 aa		13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	RSPH6A	Q9H0K4	717 aa		13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	RTCB	Q9Y3I0	505 aa	Known RBP	13.7	□□□□□ -0.22
NPIPB4-217	ENST00000543449	SCN11A	Q9UI33	1791 aa		13.69	□□□□□ -0.22
NPIPB4-217	ENST00000543449	ITPK1	Q13572	414 aa		13.69	□□□□□ -0.22
NPIPB4-217	ENST00000543449	TTC5	Q8N0Z6	440 aa		13.69	□□□□□ -0.22
NPIPB4-217	ENST00000543449	VSIG10	Q8N0Z9	540 aa		13.69	□□□□□ -0.22
NPIPB4-217	ENST00000543449	SYT17	Q9BSW7	474 aa		13.69	□□□□□ -0.22
NPIPB4-217	ENST00000543449	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.69	□□□□□ -0.22
NPIPB4-217	ENST00000543449	HTATSF1	O43719	755 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB4-217	ENST00000543449	PTCD1	O75127	700 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB4-217	ENST00000543449	TRAPPC3L	Q5T215	181 aa		13.68	□□□□□ -0.22
NPIPB4-217	ENST00000543449	RTF1	Q92541	710 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB4-217	ENST00000543449	LGR6	Q9HBX8	967 aa		13.68	□□□□□ -0.22
NPIPB4-217	ENST00000543449	COL24A1	Q17RW2	1714 aa		13.67	□□□□□ -0.22
NPIPB4-217	ENST00000543449	TUBGCP6	Q96RT7	1819 aa		13.67	□□□□□ -0.22
NPIPB4-217	ENST00000543449	RPS6KA4	O75676	772 aa		13.67	□□□□□ -0.22
NPIPB4-217	ENST00000543449	PHF14	O94880	888 aa		13.67	□□□□□ -0.22
NPIPB4-217	ENST00000543449	DDX10	Q13206	875 aa	Known RBP	13.67	□□□□□ -0.22
NPIPB4-217	ENST00000543449	ADAMTS7	Q9UKP4	1686 aa		13.66	□□□□□ -0.22
NPIPB4-217	ENST00000543449	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.66	□□□□□ -0.22
NPIPB4-217	ENST00000543449	CIC	Q96RK0	1608 aa	Predicted RBP	13.65	□□□□□ -0.22
NPIPB4-217	ENST00000543449	RFC4	P35249	363 aa		13.65	□□□□□ -0.22
NPIPB4-217	ENST00000543449	NLGN1	Q8N2Q7	840 aa		13.65	□□□□□ -0.22
NPIPB4-217	ENST00000543449	SLC4A9	Q96Q91	983 aa		13.65	□□□□□ -0.22
NPIPB4-217	ENST00000543449	CEMIP	Q8WUJ3	1361 aa		13.65	□□□□□ -0.22
NPIPB4-217	ENST00000543449	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.64	□□□□□ -0.23
NPIPB4-217	ENST00000543449	UBR3	Q6ZT12	1888 aa		13.64	□□□□□ -0.23
NPIPB4-217	ENST00000543449	CRKL	P46109	303 aa	Known RBP	13.64	□□□□□ -0.23
NPIPB4-217	ENST00000543449	CD2AP	Q9Y5K6	639 aa		13.64	□□□□□ -0.23
NPIPB4-217	ENST00000543449	MAPK8IP3	Q9UPT6	1336 aa		13.64	□□□□□ -0.23
NPIPB4-217	ENST00000543449	STARD3NL	O95772	234 aa		13.63	□□□□□ -0.23
NPIPB4-217	ENST00000543449	MSL1	Q68DK7	614 aa		13.63	□□□□□ -0.23
NPIPB4-217	ENST00000543449	KLHL34	Q8N239	644 aa		13.63	□□□□□ -0.23
NPIPB4-217	ENST00000543449	IL17RE	Q8NFR9	667 aa		13.63	□□□□□ -0.23
NPIPB4-217	ENST00000543449	PHACTR3	Q96KR7	559 aa		13.63	□□□□□ -0.23
NPIPB4-217	ENST00000543449	SLC39A6	Q13433	755 aa		13.62	□□□□□ -0.23
NPIPB4-217	ENST00000543449	ZNF790	Q6PG37	636 aa		13.62	□□□□□ -0.23
NPIPB4-217	ENST00000543449	FMNL2	Q96PY5	1086 aa		13.62	□□□□□ -0.23
NPIPB4-217	ENST00000543449	CCDC87	Q9NVE4	849 aa		13.62	□□□□□ -0.23
NPIPB4-217	ENST00000543449	COL5A3	P25940	1745 aa	Predicted RBP	13.61	□□□□□ -0.23
NPIPB4-217	ENST00000543449	BTBD11	A6QL63	1104 aa		13.61	□□□□□ -0.23
NPIPB4-217	ENST00000543449	DNAJC10	Q8IXB1	793 aa		13.61	□□□□□ -0.23
NPIPB4-217	ENST00000543449	PNISR	Q8TF01	805 aa	Known RBP	13.61	□□□□□ -0.23
NPIPB4-217	ENST00000543449	ARHGEF1	Q92888	912 aa	Known RBP	13.61	□□□□□ -0.23
NPIPB4-217	ENST00000543449		A0A087WZG4	1122 aa		13.6	□□□□□ -0.23
NPIPB4-217	ENST00000543449	CYP19A1	P11511	503 aa	Predicted RBP	13.6	□□□□□ -0.23
NPIPB4-217	ENST00000543449	NPM2	Q86SE8	214 aa	Known RBP	13.6	□□□□□ -0.23
NPIPB4-217	ENST00000543449	AMIGO3	Q86WK7	504 aa		13.6	□□□□□ -0.23
NPIPB4-217	ENST00000543449	KCP	Q6ZWJ8	1503 aa		13.59	□□□□□ -0.23
NPIPB4-217	ENST00000543449	HEG1	Q9ULI3	1381 aa		13.59	□□□□□ -0.23
NPIPB4-217	ENST00000543449	GRIN3B	O60391	1043 aa		13.59	□□□□□ -0.23
NPIPB4-217	ENST00000543449	ZPR1	O75312	459 aa		13.59	□□□□□ -0.23
NPIPB4-217	ENST00000543449	LMOD3	Q0VAK6	560 aa		13.59	□□□□□ -0.23
NPIPB4-217	ENST00000543449	GPR162	Q16538	588 aa		13.59	□□□□□ -0.23
NPIPB4-217	ENST00000543449	POTED	Q86YR6	584 aa		13.59	□□□□□ -0.23
NPIPB4-217	ENST00000543449	MMP10	P09238	476 aa		13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	WDR43	Q15061	677 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	NFE2L2	Q16236	605 aa		13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	INTS5	Q6P9B9	1019 aa	Known RBP	13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	PLEKHF1	Q96S99	279 aa		13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	PARP3	Q9Y6F1	533 aa		13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	TJP1	Q07157	1748 aa		13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	SOS1	Q07889	1333 aa	Predicted RBP	13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	USP42	Q9H9J4	1324 aa	Known RBP	13.58	□□□□□ -0.24
NPIPB4-217	ENST00000543449	VIRMA	Q69YN4	1812 aa	Known RBP	13.57	□□□□□ -0.24
NPIPB4-217	ENST00000543449	GYS1	P13807	737 aa		13.57	□□□□□ -0.24
NPIPB4-217	ENST00000543449	YY1	P25490	414 aa		13.57	□□□□□ -0.24
NPIPB4-217	ENST00000543449	TAF7	Q15545	349 aa	Predicted RBP	13.57	□□□□□ -0.24
NPIPB4-217	ENST00000543449	ZNF496	Q96IT1	587 aa	Predicted RBP	13.57	□□□□□ -0.24
NPIPB4-217	ENST00000543449	SRCAP	Q6ZRS2	3230 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms