RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 LRRC37A3O60309 1634 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 PHF14O94880 888 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 PANK1Q8TE04 598 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 BCL2L13Q9BXK5 485 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 IFT57Q9NWB7 429 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 PROSER2Q86WR7 435 aaPredicted RBP9.95□□□□□ -0.82
PDLIM5-221ENST00000542407 FAM83GA6ND36 823 aa9.95□□□□□ -0.82
PDLIM5-221ENST00000542407 PSEN1P49768 467 aa9.95□□□□□ -0.82
PDLIM5-221ENST00000542407 PROM2Q8N271 834 aa9.95□□□□□ -0.82
PDLIM5-221ENST00000542407 ANP32BQ92688 251 aaKnown RBP9.95□□□□□ -0.82
PDLIM5-221ENST00000542407 TMEM94Q12767 1356 aa9.95□□□□□ -0.82
PDLIM5-221ENST00000542407 AXDND1Q5T1B0 1012 aaPredicted RBP9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 CENPQQ7L2Z9 268 aaPredicted RBP9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 SSH1Q8WYL5 1049 aa9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 EYA1Q99502 592 aa9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 LMOD3Q0VAK6 560 aa9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 PPP4R3BQ5MIZ7 849 aa9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 C19orf44Q9H6X5 657 aa9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 MBIPQ9NS73 344 aa9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 CRB1P82279 1406 aa9.94□□□□□ -0.82
PDLIM5-221ENST00000542407 AMPHP49418 695 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 HSPA2P54652 639 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 BECN1Q14457 450 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 USP19O94966 1318 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 GNAI1P63096 354 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 CWC22Q9HCG8 908 aaKnown RBP9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 COG6Q9Y2V7 657 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 CAMTA1Q9Y6Y1 1673 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 PSME1Q06323 249 aa9.93□□□□□ -0.82
PDLIM5-221ENST00000542407 DCTN1Q14203 1278 aa9.92□□□□□ -0.82
PDLIM5-221ENST00000542407 ALDH1L2Q3SY69 923 aa9.92□□□□□ -0.82
PDLIM5-221ENST00000542407 MED1Q15648 1581 aaPredicted RBP9.92□□□□□ -0.82
PDLIM5-221ENST00000542407 SMC4Q9NTJ3 1288 aa9.92□□□□□ -0.82
PDLIM5-221ENST00000542407 NCAPD2Q15021 1401 aa9.92□□□□□ -0.82
PDLIM5-221ENST00000542407 FOXO3O43524 673 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 VAMP4O75379 141 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 TRIM27P14373 513 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 SETQ01105 290 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 MKRN4PQ13434 485 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 MTHFSDQ2M296 383 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 TSPYL6Q8N831 410 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 CLUAP1Q96AJ1 413 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 CRYBG1Q9Y4K1 1723 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 UTP14CQ5TAP6 766 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 ZKSCAN2Q63HK3 967 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 IP6K1Q92551 441 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 ZNF428Q96B54 188 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 TRIM44Q96DX7 344 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 RGPD2P0DJD1 1756 aa9.91□□□□□ -0.82
PDLIM5-221ENST00000542407 ESPNB1AK53 854 aa9.9□□□□□ -0.82
PDLIM5-221ENST00000542407 MSH6P52701 1360 aa9.9□□□□□ -0.82
PDLIM5-221ENST00000542407 XPCQ01831 940 aaPredicted RBP9.9□□□□□ -0.82
PDLIM5-221ENST00000542407 CHL1O00533 1208 aa9.9□□□□□ -0.83
PDLIM5-221ENST00000542407 IGHDP01880 384 aa9.9□□□□□ -0.83
PDLIM5-221ENST00000542407 MVPQ14764 893 aaKnown RBP9.9□□□□□ -0.83
PDLIM5-221ENST00000542407 MCM10Q7L590 875 aa9.9□□□□□ -0.83
PDLIM5-221ENST00000542407 KCNH5Q8NCM2 988 aa9.9□□□□□ -0.83
PDLIM5-221ENST00000542407 DNAJC2Q99543 621 aaKnown RBP9.9□□□□□ -0.83
PDLIM5-221ENST00000542407 NOB1Q9ULX3 412 aaKnown RBP9.9□□□□□ -0.83
PDLIM5-221ENST00000542407 LMO7Q8WWI1 1683 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 ANAPC15P60006 121 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 ATF7IPQ6VMQ6 1270 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 C8orf58Q8NAV2 365 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 PXDNQ92626 1479 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 SEC24BO95487 1268 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 KRT28Q7Z3Y7 464 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 DZIP1LQ8IYY4 767 aaKnown RBP9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 MRPL50Q8N5N7 158 aaKnown RBP9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 KIF16BQ96L93 1317 aa9.89□□□□□ -0.83
PDLIM5-221ENST00000542407 ARHGEF25Q86VW2 580 aa9.88□□□□□ -0.83
PDLIM5-221ENST00000542407 KIAA0232Q92628 1395 aa9.88□□□□□ -0.83
PDLIM5-221ENST00000542407 GCP02774 474 aa9.88□□□□□ -0.83
PDLIM5-221ENST00000542407 PCDHB15Q9Y5E8 787 aa9.88□□□□□ -0.83
PDLIM5-221ENST00000542407 ERBB4Q15303 1308 aa9.88□□□□□ -0.83
PDLIM5-221ENST00000542407 DNTTIP2Q5QJE6 756 aaKnown RBP9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 GPATCH11Q8N954 259 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 NKX1-1Q15270 411 aaPredicted RBP9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 TWISTNBQ3B726 338 aaPredicted RBP9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 COL18A1P39060 1754 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 FSD2A1L4K1 749 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 ATF3P18847 181 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 NBPF6Q5VWK0 638 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 CC2D2BQ6DHV5 1058 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 GAS2L2Q8NHY3 880 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 NBPF4Q96M43 638 aa9.87□□□□□ -0.83
PDLIM5-221ENST00000542407 HTATSF1O43719 755 aaKnown RBP9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 TPM2P07951 284 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 MRE11P49959 708 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 RGPD5Q99666 1765 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 TRAK2O60296 914 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 KIAA1211Q6ZU35 1233 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 TMEM57Q8N5G2 664 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 USHBP1Q8N6Y0 703 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 ARHGAP45Q92619 1136 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 LTV1Q96GA3 475 aaPredicted RBP9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 MAP3K5Q99683 1374 aa9.86□□□□□ -0.83
PDLIM5-221ENST00000542407 RGS12O14924 1447 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 MCM4P33991 863 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 KRT24Q2M2I5 525 aa9.85□□□□□ -0.83
PDLIM5-221ENST00000542407 CADPS2Q86UW7 1296 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms