RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 NOL10Q9BSC4 688 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 YTHDC2Q9H6S0 1430 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 CFAP44Q96MT7 982 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 JCADQ9P266 1359 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 ADAMTSL3P82987 1691 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 MYCNP04198 464 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 RXRBP28702 533 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 PLCB2Q00722 1185 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 CCDC112Q8NEF3 446 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 ADGRB3O60242 1522 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 NPC1L1Q9UHC9 1359 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 ZNF397Q8NF99 534 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 USP21Q9UK80 565 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 ABCC11Q96J66 1382 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 PER1O15534 1290 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 HTATSF1O43719 755 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 CCDC146Q8IYE0 955 aa13.05□□□□□ -0.32
CLSTN3-207ENST00000537408 SMTNL1A8MU46 457 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 APAF1O14727 1248 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 NPHP1O15259 732 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 NCBP1Q09161 790 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 C17orf53Q8N3J3 647 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 KIF18AQ8NI77 898 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 PREX1Q8TCU6 1659 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 RABEP1Q15276 862 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 NOM1Q5C9Z4 860 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 ARHGEF10O15013 1369 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 ADCY5O95622 1261 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 SAMD1Q6SPF0 538 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 BANK1Q8NDB2 785 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 BRMS1Q9HCU9 246 aa13.04□□□□□ -0.32
CLSTN3-207ENST00000537408 PSEN1P49768 467 aa13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 TMEM63CQ9P1W3 806 aa13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 GPT2Q8TD30 523 aa13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 USP25Q9UHP3 1055 aa13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 TRPC5Q9UL62 973 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 LOC102724159A0A0B4J2E5 919 aa13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 GPS2Q13227 327 aa13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 PWP2Q15269 919 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-207ENST00000537408 SMC4Q9NTJ3 1288 aa13.02□□□□□ -0.32
CLSTN3-207ENST00000537408 HOMEZQ8IX15 550 aa13.02□□□□□ -0.32
CLSTN3-207ENST00000537408 TXLNBQ8N3L3 684 aa13.02□□□□□ -0.32
CLSTN3-207ENST00000537408 SYTL4Q96C24 671 aaPredicted RBP13.02□□□□□ -0.32
CLSTN3-207ENST00000537408 CHMP4CQ96CF2 233 aa13.02□□□□□ -0.32
CLSTN3-207ENST00000537408 PAXBP1Q9Y5B6 917 aa13.02□□□□□ -0.32
CLSTN3-207ENST00000537408 PPP2R1AP30153 589 aa13.02□□□□□ -0.33
CLSTN3-207ENST00000537408 E9PCH4 1651 aa13.02□□□□□ -0.33
CLSTN3-207ENST00000537408 RAD51AP2Q09MP3 1159 aa13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 NCAPGQ9BPX3 1015 aa13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 HNRNPH2P55795 449 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 ICE2Q659A1 982 aa13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 SPATA31A6Q5VVP1 1343 aa13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 METP08581 1390 aa13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 SPATA31D1Q6ZQQ2 1576 aa13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 CEP152O94986 1710 aa13.01□□□□□ -0.33
CLSTN3-207ENST00000537408 ST18O60284 1047 aa13□□□□□ -0.33
CLSTN3-207ENST00000537408 QTRT2Q9H974 415 aaKnown RBP13□□□□□ -0.33
CLSTN3-207ENST00000537408 ACEP12821 1306 aa13□□□□□ -0.33
CLSTN3-207ENST00000537408 BRINP3Q76B58 766 aa13□□□□□ -0.33
CLSTN3-207ENST00000537408 MVPQ14764 893 aaKnown RBP13□□□□□ -0.33
CLSTN3-207ENST00000537408 REC8O95072 547 aa12.99□□□□□ -0.33
CLSTN3-207ENST00000537408 RNF20Q5VTR2 975 aa12.99□□□□□ -0.33
CLSTN3-207ENST00000537408 KIAA1524Q8TCG1 905 aa12.99□□□□□ -0.33
CLSTN3-207ENST00000537408 RNF17Q9BXT8 1623 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-207ENST00000537408 TPM4P67936 248 aa12.99□□□□□ -0.33
CLSTN3-207ENST00000537408 BMS1Q14692 1282 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-207ENST00000537408 DEF6Q9H4E7 631 aa12.99□□□□□ -0.33
CLSTN3-207ENST00000537408 DHX16O60231 1041 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 CYP2C19P33261 490 aa12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 RTF1Q92541 710 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 CASQ1P31415 396 aa12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 RARSP54136 660 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 HDAC1Q13547 482 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 ZKSCAN2Q63HK3 967 aa12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 GPATCH11Q8N954 259 aa12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 IFT57Q9NWB7 429 aa12.98□□□□□ -0.33
CLSTN3-207ENST00000537408 C3P01024 1663 aa12.97□□□□□ -0.33
CLSTN3-207ENST00000537408 C1orf141Q5JVX7 400 aa12.97□□□□□ -0.33
CLSTN3-207ENST00000537408 SPINK5Q9NQ38 1064 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-207ENST00000537408 MROH2AA6NES4 1674 aa12.97□□□□□ -0.33
CLSTN3-207ENST00000537408 DZIP1LQ8IYY4 767 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-207ENST00000537408 CD2BP2O95400 341 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 DDX19BQ9UMR2 479 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 CROCC2H7BZ55 1655 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 ANKRD36BQ8N2N9 1353 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 TATP17735 454 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 BMP2KLQ5H9B9 411 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 SLC12A5Q9H2X9 1139 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 IQGAP3Q86VI3 1631 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 TNNT1P13805 278 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 CABLES1Q8TDN4 633 aa12.96□□□□□ -0.33
CLSTN3-207ENST00000537408 ADGRL3Q9HAR2 1447 aa12.96□□□□□ -0.34
CLSTN3-207ENST00000537408 C10orf67Q8IYJ2 551 aa12.96□□□□□ -0.34
CLSTN3-207ENST00000537408 TMX1Q9H3N1 280 aa12.96□□□□□ -0.34
CLSTN3-207ENST00000537408 CEP83Q9Y592 693 aa12.96□□□□□ -0.34
CLSTN3-207ENST00000537408 TTC21AQ8NDW8 1320 aa12.95□□□□□ -0.34
CLSTN3-207ENST00000537408 DDX17Q92841 729 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-207ENST00000537408 ZFYVE9O95405 1425 aa12.95□□□□□ -0.34
CLSTN3-207ENST00000537408 CYP2E1P05181 493 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-207ENST00000537408 EXOC5O00471 708 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms