RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 LNPKQ9C0E8 428 aa17.14■□□□□ 0.33
LIG1-203ENST00000536218 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.14■□□□□ 0.33
LIG1-203ENST00000536218 ZBTB7BO15156 539 aaPredicted RBP17.13■□□□□ 0.33
LIG1-203ENST00000536218 DLG5Q8TDM6 1919 aa17.13■□□□□ 0.33
LIG1-203ENST00000536218 HDAC1Q13547 482 aaPredicted RBP17.13■□□□□ 0.33
LIG1-203ENST00000536218 NECTIN2Q92692 538 aa17.13■□□□□ 0.33
LIG1-203ENST00000536218 TMEM51Q9NW97 253 aa17.12■□□□□ 0.33
LIG1-203ENST00000536218 FAM177BA6PVY3 158 aa17.12■□□□□ 0.33
LIG1-203ENST00000536218 CAVIN1Q6NZI2 390 aaKnown RBP17.12■□□□□ 0.33
LIG1-203ENST00000536218 ZKSCAN5Q9Y2L8 839 aa17.12■□□□□ 0.33
LIG1-203ENST00000536218 RAB3GAP1Q15042 981 aa17.12■□□□□ 0.33
LIG1-203ENST00000536218 PROSER2Q86WR7 435 aaPredicted RBP17.12■□□□□ 0.33
LIG1-203ENST00000536218 KIF20AO95235 890 aa17.11■□□□□ 0.33
LIG1-203ENST00000536218 SSFA2P28290 1259 aa17.11■□□□□ 0.33
LIG1-203ENST00000536218 GTPBP4Q9BZE4 634 aaKnown RBP17.11■□□□□ 0.33
LIG1-203ENST00000536218 BRPF1P55201 1214 aaPredicted RBP17.11■□□□□ 0.33
LIG1-203ENST00000536218 ARHGAP45Q92619 1136 aa17.11■□□□□ 0.33
LIG1-203ENST00000536218 ANKARQ7Z5J8 1434 aa17.11■□□□□ 0.33
LIG1-203ENST00000536218 XRN1Q8IZH2 1706 aaKnown RBP17.11■□□□□ 0.33
LIG1-203ENST00000536218 SPDYE4A6NLX3 237 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 ZBTB22O15209 634 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 PTMSP20962 102 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 CDK11BP21127 795 aaKnown RBP17.1■□□□□ 0.33
LIG1-203ENST00000536218 API5Q9BZZ5 524 aaKnown RBP17.1■□□□□ 0.33
LIG1-203ENST00000536218 IGSF1Q8N6C5 1336 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 ARHGEF10O15013 1369 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 SLC4A2P04920 1241 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 IPO4Q8TEX9 1081 aaKnown RBP17.1■□□□□ 0.33
LIG1-203ENST00000536218 CGNQ9P2M7 1197 aaKnown RBP17.1■□□□□ 0.33
LIG1-203ENST00000536218 ANKRD45Q5TZF3 282 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 GAS2L2Q8NHY3 880 aa17.1■□□□□ 0.33
LIG1-203ENST00000536218 PTMAP06454 111 aaKnown RBP17.09■□□□□ 0.33
LIG1-203ENST00000536218 HS1BP3Q53T59 392 aa17.09■□□□□ 0.33
LIG1-203ENST00000536218 PAXIP1Q6ZW49 1069 aaPredicted RBP17.09■□□□□ 0.33
LIG1-203ENST00000536218 RBSNQ9H1K0 784 aa17.09■□□□□ 0.33
LIG1-203ENST00000536218 SMC5Q8IY18 1101 aa17.09■□□□□ 0.33
LIG1-203ENST00000536218 SETD1BQ9UPS6 1966 aaKnown RBP17.09■□□□□ 0.33
LIG1-203ENST00000536218 LETM1O95202 739 aaPredicted RBP17.08■□□□□ 0.33
LIG1-203ENST00000536218 TAF7LQ5H9L4 462 aa17.08■□□□□ 0.32
LIG1-203ENST00000536218 SLC4A10Q6U841 1118 aa17.08■□□□□ 0.32
LIG1-203ENST00000536218 PIK3C2AO00443 1686 aa17.08■□□□□ 0.32
LIG1-203ENST00000536218 MPNDQ8N594 471 aa17.08■□□□□ 0.32
LIG1-203ENST00000536218 ZNF830Q96NB3 372 aaPredicted RBP17.07■□□□□ 0.32
LIG1-203ENST00000536218 CIZ1Q9ULV3 898 aaPredicted RBP17.07■□□□□ 0.32
LIG1-203ENST00000536218 NPHP4O75161 1426 aaPredicted RBP17.07■□□□□ 0.32
LIG1-203ENST00000536218 VIRMAQ69YN4 1812 aaKnown RBP17.07■□□□□ 0.32
LIG1-203ENST00000536218 DDIT3P35638 169 aa17.07■□□□□ 0.32
LIG1-203ENST00000536218 ATP2B3Q16720 1220 aa17.07■□□□□ 0.32
LIG1-203ENST00000536218 KLHL40Q2TBA0 621 aa17.07■□□□□ 0.32
LIG1-203ENST00000536218 LRRC59Q96AG4 307 aaKnown RBP17.07■□□□□ 0.32
LIG1-203ENST00000536218 ABCC4O15439 1325 aa17.06■□□□□ 0.32
LIG1-203ENST00000536218 GNAT3A8MTJ3 354 aa17.06■□□□□ 0.32
LIG1-203ENST00000536218 MCTP1Q6DN14 999 aa17.06■□□□□ 0.32
LIG1-203ENST00000536218 F6X3S4 739 aa17.06■□□□□ 0.32
LIG1-203ENST00000536218 G2E3Q7L622 706 aa17.06■□□□□ 0.32
LIG1-203ENST00000536218 NBPF6Q5VWK0 638 aa17.05■□□□□ 0.32
LIG1-203ENST00000536218 SIRT2Q8IXJ6 389 aa17.05■□□□□ 0.32
LIG1-203ENST00000536218 NBPF4Q96M43 638 aa17.05■□□□□ 0.32
LIG1-203ENST00000536218 APBB1O00213 710 aa17.05■□□□□ 0.32
LIG1-203ENST00000536218 PRIM1P49642 420 aaKnown RBP17.05■□□□□ 0.32
LIG1-203ENST00000536218 IL17REQ8NFR9 667 aa17.05■□□□□ 0.32
LIG1-203ENST00000536218 CRB1P82279 1406 aa17.05■□□□□ 0.32
LIG1-203ENST00000536218 KDRP35968 1356 aa17.04■□□□□ 0.32
LIG1-203ENST00000536218 NALCNQ8IZF0 1738 aa17.04■□□□□ 0.32
LIG1-203ENST00000536218 ZSCAN23Q3MJ62 389 aa17.04■□□□□ 0.32
LIG1-203ENST00000536218 CHD1LQ86WJ1 897 aa17.04■□□□□ 0.32
LIG1-203ENST00000536218 HAP1P54257 671 aaPredicted RBP17.04■□□□□ 0.32
LIG1-203ENST00000536218 NUCB1Q02818 461 aa17.03■□□□□ 0.32
LIG1-203ENST00000536218 RNF214Q8ND24 703 aa17.03■□□□□ 0.32
LIG1-203ENST00000536218 IP6K1Q92551 441 aa17.03■□□□□ 0.32
LIG1-203ENST00000536218 DDX17Q92841 729 aaKnown RBP17.03■□□□□ 0.32
LIG1-203ENST00000536218 ZNF771Q7L3S4 317 aaPredicted RBP17.03■□□□□ 0.32
LIG1-203ENST00000536218 CCDC39Q9UFE4 941 aa17.03■□□□□ 0.32
LIG1-203ENST00000536218 BAG4O95429 457 aaKnown RBP17.03■□□□□ 0.32
LIG1-203ENST00000536218 ZNF710Q8N1W2 664 aa17.03■□□□□ 0.32
LIG1-203ENST00000536218 ADGRL3Q9HAR2 1447 aa17.02■□□□□ 0.32
LIG1-203ENST00000536218 FMN2Q9NZ56 1722 aa17.02■□□□□ 0.32
LIG1-203ENST00000536218 GCP02774 474 aa17.02■□□□□ 0.31
LIG1-203ENST00000536218 MYRIPQ8NFW9 859 aa17.02■□□□□ 0.31
LIG1-203ENST00000536218 RBM27Q9P2N5 1060 aaKnown RBP17.01■□□□□ 0.31
LIG1-203ENST00000536218 KRT28Q7Z3Y7 464 aa17.01■□□□□ 0.31
LIG1-203ENST00000536218 PDLIM2Q96JY6 352 aa17.01■□□□□ 0.31
LIG1-203ENST00000536218 CHD2O14647 1828 aaKnown RBP17.01■□□□□ 0.31
LIG1-203ENST00000536218 CD2BP2O95400 341 aaKnown RBP17.01■□□□□ 0.31
LIG1-203ENST00000536218 ZC3H6P61129 1189 aaKnown RBP17.01■□□□□ 0.31
LIG1-203ENST00000536218 MEIS3Q99687 375 aa17.01■□□□□ 0.31
LIG1-203ENST00000536218 HSPA2P54652 639 aa17■□□□□ 0.31
LIG1-203ENST00000536218 KIAA2012Q0VF49 1180 aa17■□□□□ 0.31
LIG1-203ENST00000536218 STK31Q9BXU1 1019 aa17■□□□□ 0.31
LIG1-203ENST00000536218 KIAA0232Q92628 1395 aa17■□□□□ 0.31
LIG1-203ENST00000536218 ZNF445P59923 1031 aa17■□□□□ 0.31
LIG1-203ENST00000536218 KCNH5Q8NCM2 988 aa17■□□□□ 0.31
LIG1-203ENST00000536218 LGR6Q9HBX8 967 aa17■□□□□ 0.31
LIG1-203ENST00000536218 MCM5P33992 734 aa16.99■□□□□ 0.31
LIG1-203ENST00000536218 SNX21Q969T3 373 aa16.99■□□□□ 0.31
LIG1-203ENST00000536218 RGPD1P0DJD0 1748 aa16.99■□□□□ 0.31
LIG1-203ENST00000536218 INTS3Q68E01 1043 aaKnown RBP16.99■□□□□ 0.31
LIG1-203ENST00000536218 GCC1Q96CN9 775 aa16.99■□□□□ 0.31
LIG1-203ENST00000536218 RBM42Q9BTD8 480 aaKnown RBP16.99■□□□□ 0.31
LIG1-203ENST00000536218 ADAMTSL3P82987 1691 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms