RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 LMNB1P20700 586 aa15.31■□□□□ 0.04
CSDE1-215ENST00000533818 LOC102724428A0A0B4J2F2 783 aa15.3■□□□□ 0.04
CSDE1-215ENST00000533818 TNRC18O15417 2968 aaPredicted RBP15.3■□□□□ 0.04
CSDE1-215ENST00000533818 MEGF6O75095 1541 aa15.3■□□□□ 0.04
CSDE1-215ENST00000533818 SIK1P57059 783 aa15.3■□□□□ 0.04
CSDE1-215ENST00000533818 TRAPPC3LQ5T215 181 aa15.3■□□□□ 0.04
CSDE1-215ENST00000533818 ARFGEF1Q9Y6D6 1849 aa15.29■□□□□ 0.04
CSDE1-215ENST00000533818 DPY19L2Q6NUT2 758 aa15.29■□□□□ 0.04
CSDE1-215ENST00000533818 CGNL1Q0VF96 1302 aa15.28■□□□□ 0.04
CSDE1-215ENST00000533818 MAP2K1Q02750 393 aaPredicted RBP15.28■□□□□ 0.04
CSDE1-215ENST00000533818 PIGBQ92521 554 aa15.28■□□□□ 0.04
CSDE1-215ENST00000533818 LTN1O94822 1766 aa15.28■□□□□ 0.04
CSDE1-215ENST00000533818 KDM6AO15550 1401 aaPredicted RBP15.27■□□□□ 0.04
CSDE1-215ENST00000533818 BRCA1P38398 1863 aaKnown RBP15.27■□□□□ 0.04
CSDE1-215ENST00000533818 CHRNA5P30532 468 aa15.27■□□□□ 0.04
CSDE1-215ENST00000533818 ITPK1Q13572 414 aa15.27■□□□□ 0.04
CSDE1-215ENST00000533818 RAPGEF4Q8WZA2 1011 aa15.27■□□□□ 0.04
CSDE1-215ENST00000533818 RTCBQ9Y3I0 505 aaKnown RBP15.27■□□□□ 0.04
CSDE1-215ENST00000533818 TMEM88BA6NKF7 163 aa15.26■□□□□ 0.03
CSDE1-215ENST00000533818 GYS1P13807 737 aa15.26■□□□□ 0.03
CSDE1-215ENST00000533818 ATP6V1AP38606 617 aa15.26■□□□□ 0.03
CSDE1-215ENST00000533818 SBF1O95248 1867 aa15.26■□□□□ 0.03
CSDE1-215ENST00000533818 PDE4DIPQ5VU43 2346 aa15.26■□□□□ 0.03
CSDE1-215ENST00000533818 PCDH11XQ9BZA7 1347 aa15.25■□□□□ 0.03
CSDE1-215ENST00000533818 PCDH11YQ9BZA8 1340 aa15.25■□□□□ 0.03
CSDE1-215ENST00000533818 POTEIP0CG38 1075 aa15.25■□□□□ 0.03
CSDE1-215ENST00000533818 POTEJP0CG39 1038 aa15.25■□□□□ 0.03
CSDE1-215ENST00000533818 ARHGEF1Q92888 912 aaKnown RBP15.25■□□□□ 0.03
CSDE1-215ENST00000533818 TATP17735 454 aaPredicted RBP15.24■□□□□ 0.03
CSDE1-215ENST00000533818 C4AP0C0L4 1744 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 PASKQ96RG2 1323 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 FAM208AQ9UK61 1670 aaKnown RBP15.23■□□□□ 0.03
CSDE1-215ENST00000533818 HOXC9P31274 260 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 RFC4P35249 363 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 AMPHP49418 695 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 NBPF6Q5VWK0 638 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 USHBP1Q8N6Y0 703 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 NBPF4Q96M43 638 aa15.23■□□□□ 0.03
CSDE1-215ENST00000533818 CYP27B1O15528 508 aa15.22■□□□□ 0.03
CSDE1-215ENST00000533818 DEFB115Q30KQ5 88 aa15.22■□□□□ 0.03
CSDE1-215ENST00000533818 SBNO2Q9Y2G9 1366 aa15.22■□□□□ 0.03
CSDE1-215ENST00000533818 ADRA2BP18089 450 aa15.21■□□□□ 0.03
CSDE1-215ENST00000533818 BEGAINQ9BUH8 593 aa15.21■□□□□ 0.03
CSDE1-215ENST00000533818 ASAP1Q9ULH1 1129 aa15.21■□□□□ 0.03
CSDE1-215ENST00000533818 WDR33Q9C0J8 1336 aaKnown RBP15.2■□□□□ 0.02
CSDE1-215ENST00000533818 RASSF10A6NK89 507 aa15.2■□□□□ 0.02
CSDE1-215ENST00000533818 PRPF38BQ5VTL8 546 aaKnown RBP15.2■□□□□ 0.02
CSDE1-215ENST00000533818 MCOLN1Q9GZU1 580 aa15.2■□□□□ 0.02
CSDE1-215ENST00000533818 CD163L1Q9NR16 1453 aa15.2■□□□□ 0.02
CSDE1-215ENST00000533818 MAP3K19Q56UN5 1328 aa15.19■□□□□ 0.02
CSDE1-215ENST00000533818 LDHDQ86WU2 507 aa15.18■□□□□ 0.02
CSDE1-215ENST00000533818 VIRMAQ69YN4 1812 aaKnown RBP15.17■□□□□ 0.02
CSDE1-215ENST00000533818 NFKBIEO00221 500 aa15.17■□□□□ 0.02
CSDE1-215ENST00000533818 ITGBL1O95965 494 aaPredicted RBP15.17■□□□□ 0.02
CSDE1-215ENST00000533818 DDR1Q08345 913 aa15.17■□□□□ 0.02
CSDE1-215ENST00000533818 HDGFL2Q7Z4V5 671 aaPredicted RBP15.17■□□□□ 0.02
CSDE1-215ENST00000533818 TMOD3Q9NYL9 352 aa15.17■□□□□ 0.02
CSDE1-215ENST00000533818 MAP2P11137 1827 aaKnown RBP15.16■□□□□ 0.02
CSDE1-215ENST00000533818 RPS6KA4O75676 772 aa15.16■□□□□ 0.02
CSDE1-215ENST00000533818 FBLN1P23142 703 aa15.16■□□□□ 0.02
CSDE1-215ENST00000533818 ERFEQ4G0M1 354 aa15.16■□□□□ 0.02
CSDE1-215ENST00000533818 RC3H1Q5TC82 1133 aaKnown RBP15.16■□□□□ 0.02
CSDE1-215ENST00000533818 DDNO94850 711 aaPredicted RBP15.15■□□□□ 0.02
CSDE1-215ENST00000533818 FKBP8Q14318 412 aa15.15■□□□□ 0.02
CSDE1-215ENST00000533818 TTLL6Q8N841 843 aa15.15■□□□□ 0.02
CSDE1-215ENST00000533818 TSKSQ9UJT2 592 aa15.15■□□□□ 0.02
CSDE1-215ENST00000533818 MON2Q7Z3U7 1717 aa15.14■□□□□ 0.01
CSDE1-215ENST00000533818 NKX1-1Q15270 411 aaPredicted RBP15.14■□□□□ 0.01
CSDE1-215ENST00000533818 TMC1Q8TDI8 760 aa15.14■□□□□ 0.01
CSDE1-215ENST00000533818 ATG3Q9NT62 314 aa15.14■□□□□ 0.01
CSDE1-215ENST00000533818 ABT1Q9ULW3 272 aaKnown RBP15.14■□□□□ 0.01
CSDE1-215ENST00000533818 RGPD2P0DJD1 1756 aa15.13■□□□□ 0.01
CSDE1-215ENST00000533818 IQCA1LA6NCM1 817 aa15.13■□□□□ 0.01
CSDE1-215ENST00000533818 SRP68Q9UHB9 627 aaKnown RBP15.13■□□□□ 0.01
CSDE1-215ENST00000533818 TIAM2Q8IVF5 1701 aa15.12■□□□□ 0.01
CSDE1-215ENST00000533818 EDC4Q6P2E9 1401 aaKnown RBP15.12■□□□□ 0.01
CSDE1-215ENST00000533818 DGKZQ13574 1117 aa15.12■□□□□ 0.01
CSDE1-215ENST00000533818 CLEC11AQ9Y240 323 aa15.12■□□□□ 0.01
CSDE1-215ENST00000533818 ITGB4P16144 1822 aa15.12■□□□□ 0.01
CSDE1-215ENST00000533818 POLRMTO00411 1230 aaKnown RBP15.11■□□□□ 0.01
CSDE1-215ENST00000533818 EAPPQ56P03 285 aaPredicted RBP15.11■□□□□ 0.01
CSDE1-215ENST00000533818 COG3Q96JB2 828 aa15.11■□□□□ 0.01
CSDE1-215ENST00000533818 GPR101Q96P66 508 aaPredicted RBP15.11■□□□□ 0.01
CSDE1-215ENST00000533818 SLC4A9Q96Q91 983 aa15.11■□□□□ 0.01
CSDE1-215ENST00000533818 RBM42Q9BTD8 480 aaKnown RBP15.11■□□□□ 0.01
CSDE1-215ENST00000533818 TAF1DQ9H5J8 278 aaPredicted RBP15.11■□□□□ 0.01
CSDE1-215ENST00000533818 ZNF219Q9P2Y4 722 aaPredicted RBP15.11■□□□□ 0.01
CSDE1-215ENST00000533818 CNTNAP4Q9C0A0 1308 aa15.11■□□□□ 0.01
CSDE1-215ENST00000533818 GRM1Q13255 1194 aa15.1■□□□□ 0.01
CSDE1-215ENST00000533818 PAXIP1Q6ZW49 1069 aaPredicted RBP15.1■□□□□ 0.01
CSDE1-215ENST00000533818 CAPNS2Q96L46 248 aa15.1■□□□□ 0.01
CSDE1-215ENST00000533818 SLC12A5Q9H2X9 1139 aa15.1■□□□□ 0.01
CSDE1-215ENST00000533818 SMG6Q86US8 1419 aaKnown RBP15.09■□□□□ 0.01
CSDE1-215ENST00000533818 TM4SF1P30408 202 aa15.09■□□□□ 0.01
CSDE1-215ENST00000533818 ECE1P42892 770 aa15.09■□□□□ 0.01
CSDE1-215ENST00000533818 SOX10P56693 466 aa15.09■□□□□ 0.01
CSDE1-215ENST00000533818 TERF2IPQ9NYB0 399 aa15.09■□□□□ 0.01
CSDE1-215ENST00000533818 CNTROBQ8N137 903 aa15.08■□□□□ 0
CSDE1-215ENST00000533818 SPG7Q9UQ90 795 aa15.08■□□□□ 0
CSDE1-215ENST00000533818 USP42Q9H9J4 1324 aaKnown RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms