RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 LINC00116Q8NCU8 138 aa15.8■□□□□ 0.12
TRAPPC4-213ENST00000533149 CCDC87Q9NVE4 849 aa15.8■□□□□ 0.12
TRAPPC4-213ENST00000533149 HSPA1AP0DMV8 641 aaKnown RBP15.79■□□□□ 0.12
TRAPPC4-213ENST00000533149 HSPA1BP0DMV9 641 aaKnown RBP15.79■□□□□ 0.12
TRAPPC4-213ENST00000533149 PIGBQ92521 554 aa15.79■□□□□ 0.12
TRAPPC4-213ENST00000533149 PUS7Q96PZ0 661 aaKnown RBP15.79■□□□□ 0.12
TRAPPC4-213ENST00000533149 RRAGCQ9HB90 399 aa15.79■□□□□ 0.12
TRAPPC4-213ENST00000533149 CYP27B1O15528 508 aa15.78■□□□□ 0.12
TRAPPC4-213ENST00000533149 DPEP1P16444 411 aa15.78■□□□□ 0.12
TRAPPC4-213ENST00000533149 N4BP2Q86UW6 1770 aaPredicted RBP15.78■□□□□ 0.12
TRAPPC4-213ENST00000533149 KCPQ6ZWJ8 1503 aa15.78■□□□□ 0.12
TRAPPC4-213ENST00000533149 KIAA1551Q9HCM1 1747 aa15.78■□□□□ 0.12
TRAPPC4-213ENST00000533149 SLC34A2O95436 690 aa15.77■□□□□ 0.12
TRAPPC4-213ENST00000533149 FBLN1P23142 703 aa15.77■□□□□ 0.12
TRAPPC4-213ENST00000533149 TMF1P82094 1093 aa15.77■□□□□ 0.12
TRAPPC4-213ENST00000533149 ATP6V1AP38606 617 aa15.76■□□□□ 0.11
TRAPPC4-213ENST00000533149 TRAPPC3LQ5T215 181 aa15.76■□□□□ 0.11
TRAPPC4-213ENST00000533149 PIM2Q9P1W9 311 aa15.76■□□□□ 0.11
TRAPPC4-213ENST00000533149 RNF181Q9P0P0 153 aa15.75■□□□□ 0.11
TRAPPC4-213ENST00000533149 ITGB4P16144 1822 aa15.74■□□□□ 0.11
TRAPPC4-213ENST00000533149 ITPK1Q13572 414 aa15.74■□□□□ 0.11
TRAPPC4-213ENST00000533149 RRS1Q15050 365 aaKnown RBP15.74■□□□□ 0.11
TRAPPC4-213ENST00000533149 NKX1-1Q15270 411 aaPredicted RBP15.74■□□□□ 0.11
TRAPPC4-213ENST00000533149 DCAF5Q96JK2 942 aa15.74■□□□□ 0.11
TRAPPC4-213ENST00000533149 RTCBQ9Y3I0 505 aaKnown RBP15.74■□□□□ 0.11
TRAPPC4-213ENST00000533149 PARP3Q9Y6F1 533 aa15.74■□□□□ 0.11
TRAPPC4-213ENST00000533149 TNRC6CQ9HCJ0 1690 aaKnown RBP15.73■□□□□ 0.11
TRAPPC4-213ENST00000533149 DALRD3Q5D0E6 543 aaKnown RBP15.73■□□□□ 0.11
TRAPPC4-213ENST00000533149 TMOD3Q9NYL9 352 aa15.73■□□□□ 0.11
TRAPPC4-213ENST00000533149 MAP2P11137 1827 aaKnown RBP15.73■□□□□ 0.11
TRAPPC4-213ENST00000533149 PKD1L3Q7Z443 1732 aa15.73■□□□□ 0.11
TRAPPC4-213ENST00000533149 KCNA3P22001 575 aa15.72■□□□□ 0.11
TRAPPC4-213ENST00000533149 INSRP06213 1382 aa15.72■□□□□ 0.11
TRAPPC4-213ENST00000533149 CARD11Q9BXL7 1154 aa15.71■□□□□ 0.11
TRAPPC4-213ENST00000533149 ASAP1Q9ULH1 1129 aa15.71■□□□□ 0.11
TRAPPC4-213ENST00000533149 SPG7Q9UQ90 795 aa15.71■□□□□ 0.11
TRAPPC4-213ENST00000533149 ZC3H4Q9UPT8 1303 aaKnown RBP15.71■□□□□ 0.11
TRAPPC4-213ENST00000533149 ARFGEF1Q9Y6D6 1849 aa15.71■□□□□ 0.11
TRAPPC4-213ENST00000533149 BRCA1P38398 1863 aaKnown RBP15.71■□□□□ 0.11
TRAPPC4-213ENST00000533149 C4AP0C0L4 1744 aa15.7■□□□□ 0.1
TRAPPC4-213ENST00000533149 RFC4P35249 363 aa15.7■□□□□ 0.1
TRAPPC4-213ENST00000533149 HSP90AB2PQ58FF8 381 aa15.7■□□□□ 0.1
TRAPPC4-213ENST00000533149 KIF24Q5T7B8 1368 aa15.7■□□□□ 0.1
TRAPPC4-213ENST00000533149 GYS1P13807 737 aa15.69■□□□□ 0.1
TRAPPC4-213ENST00000533149 VEGFAP15692 232 aaPredicted RBP15.69■□□□□ 0.1
TRAPPC4-213ENST00000533149 ARHGEF1Q92888 912 aaKnown RBP15.69■□□□□ 0.1
TRAPPC4-213ENST00000533149 FLT4P35916 1363 aa15.69■□□□□ 0.1
TRAPPC4-213ENST00000533149 RC3H1Q5TC82 1133 aaKnown RBP15.68■□□□□ 0.1
TRAPPC4-213ENST00000533149 ATG3Q9NT62 314 aa15.68■□□□□ 0.1
TRAPPC4-213ENST00000533149 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.68■□□□□ 0.1
TRAPPC4-213ENST00000533149 FYB1O15117 783 aa15.67■□□□□ 0.1
TRAPPC4-213ENST00000533149 GLTPD2A6NH11 291 aa15.66■□□□□ 0.1
TRAPPC4-213ENST00000533149 SLC24A1O60721 1099 aa15.66■□□□□ 0.1
TRAPPC4-213ENST00000533149 RPS6KA4O75676 772 aa15.66■□□□□ 0.1
TRAPPC4-213ENST00000533149 GGNBP2Q9H3C7 697 aa15.66■□□□□ 0.1
TRAPPC4-213ENST00000533149 CNTNAP4Q9C0A0 1308 aa15.65■□□□□ 0.1
TRAPPC4-213ENST00000533149 IFNL2Q8IZJ0 200 aa15.65■□□□□ 0.1
TRAPPC4-213ENST00000533149 PCDH10Q9P2E7 1040 aa15.65■□□□□ 0.1
TRAPPC4-213ENST00000533149 KDRP35968 1356 aa15.64■□□□□ 0.09
TRAPPC4-213ENST00000533149 LMNB1P20700 586 aa15.64■□□□□ 0.09
TRAPPC4-213ENST00000533149 PRDM10Q9NQV6 1147 aa15.64■□□□□ 0.09
TRAPPC4-213ENST00000533149 PCNTO95613 3336 aa15.63■□□□□ 0.09
TRAPPC4-213ENST00000533149 PHKG2P15735 406 aa15.63■□□□□ 0.09
TRAPPC4-213ENST00000533149 RBM42Q9BTD8 480 aaKnown RBP15.63■□□□□ 0.09
TRAPPC4-213ENST00000533149 SBF1O95248 1867 aa15.63■□□□□ 0.09
TRAPPC4-213ENST00000533149 KDM6AO15550 1401 aaPredicted RBP15.62■□□□□ 0.09
TRAPPC4-213ENST00000533149 NCAPD2Q15021 1401 aa15.62■□□□□ 0.09
TRAPPC4-213ENST00000533149 CHRNA5P30532 468 aa15.62■□□□□ 0.09
TRAPPC4-213ENST00000533149 CREBZFQ9NS37 354 aa15.62■□□□□ 0.09
TRAPPC4-213ENST00000533149 ZNF831Q5JPB2 1677 aa15.62■□□□□ 0.09
TRAPPC4-213ENST00000533149 RASSF7Q02833 373 aa15.6■□□□□ 0.09
TRAPPC4-213ENST00000533149 DPY19L2Q6NUT2 758 aa15.6■□□□□ 0.09
TRAPPC4-213ENST00000533149 SLC4A9Q96Q91 983 aa15.6■□□□□ 0.09
TRAPPC4-213ENST00000533149 ERVV-2B6SEH9 535 aa15.59■□□□□ 0.09
TRAPPC4-213ENST00000533149 FOXN1O15353 648 aa15.59■□□□□ 0.09
TRAPPC4-213ENST00000533149 DDR1Q08345 913 aa15.59■□□□□ 0.09
TRAPPC4-213ENST00000533149 FKBP8Q14318 412 aa15.59■□□□□ 0.09
TRAPPC4-213ENST00000533149 AIDAQ96BJ3 306 aa15.59■□□□□ 0.09
TRAPPC4-213ENST00000533149 TESK2Q96S53 571 aa15.59■□□□□ 0.09
TRAPPC4-213ENST00000533149 MKRN1Q9UHC7 482 aaKnown RBP15.59■□□□□ 0.09
TRAPPC4-213ENST00000533149 ZNF316A6NFI3 1004 aaPredicted RBP15.58■□□□□ 0.08
TRAPPC4-213ENST00000533149 CTCFP49711 727 aaPredicted RBP15.58■□□□□ 0.08
TRAPPC4-213ENST00000533149 USP42Q9H9J4 1324 aaKnown RBP15.57■□□□□ 0.08
TRAPPC4-213ENST00000533149 EMILIN1Q9Y6C2 1016 aa15.57■□□□□ 0.08
TRAPPC4-213ENST00000533149 COL5A3P25940 1745 aaPredicted RBP15.57■□□□□ 0.08
TRAPPC4-213ENST00000533149 POLRMTO00411 1230 aaKnown RBP15.56■□□□□ 0.08
TRAPPC4-213ENST00000533149 PPM1GO15355 546 aaPredicted RBP15.56■□□□□ 0.08
TRAPPC4-213ENST00000533149 HSP90AB1P08238 724 aaKnown RBP15.56■□□□□ 0.08
TRAPPC4-213ENST00000533149 EYA1Q99502 592 aa15.56■□□□□ 0.08
TRAPPC4-213ENST00000533149 SRP68Q9UHB9 627 aaKnown RBP15.56■□□□□ 0.08
TRAPPC4-213ENST00000533149 POTECB2RU33 542 aa15.55■□□□□ 0.08
TRAPPC4-213ENST00000533149 TM4SF1P30408 202 aa15.55■□□□□ 0.08
TRAPPC4-213ENST00000533149 CHADLQ6NUI6 762 aa15.55■□□□□ 0.08
TRAPPC4-213ENST00000533149 WASHC2AQ641Q2 1341 aa15.55■□□□□ 0.08
TRAPPC4-213ENST00000533149 CNTNAP1P78357 1384 aa15.54■□□□□ 0.08
TRAPPC4-213ENST00000533149 ST20-MTHFSA0A0A6YYL1 179 aa15.54■□□□□ 0.08
TRAPPC4-213ENST00000533149 CRKLP46109 303 aaKnown RBP15.54■□□□□ 0.08
TRAPPC4-213ENST00000533149 FAM161AQ3B820 660 aa15.54■□□□□ 0.08
TRAPPC4-213ENST00000533149 TTLL6Q8N841 843 aa15.54■□□□□ 0.08
TRAPPC4-213ENST00000533149 CABP4P57796 275 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms