RNA–Protein interactions for RNA: ENST00000531270.5

LRRK1-207, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 1 (best)

Gene LRRK1, Length 6,015 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-207ENST00000531270 GUCY1B3Q02153 619 aa17.06■□□□□ 0.32
LRRK1-207ENST00000531270 SMC1AQ14683 1233 aaKnown RBP17.06■□□□□ 0.32
LRRK1-207ENST00000531270 CDK19Q9BWU1 502 aa17.06■□□□□ 0.32
LRRK1-207ENST00000531270 CCDC7Q96M83 1385 aa17.06■□□□□ 0.32
LRRK1-207ENST00000531270 CPLX3Q8WVH0 158 aa17.05■□□□□ 0.32
LRRK1-207ENST00000531270 PPP6R1Q9UPN7 881 aa17.05■□□□□ 0.32
LRRK1-207ENST00000531270 RNF187Q5TA31 235 aaPredicted RBP17.05■□□□□ 0.32
LRRK1-207ENST00000531270 ZSCAN31Q96LW9 406 aaPredicted RBP17.05■□□□□ 0.32
LRRK1-207ENST00000531270 CUL5Q93034 780 aa17.05■□□□□ 0.32
LRRK1-207ENST00000531270 CABP1Q9NZU7 370 aa17.05■□□□□ 0.32
LRRK1-207ENST00000531270 RRS1Q15050 365 aaKnown RBP17.04■□□□□ 0.32
LRRK1-207ENST00000531270 TDRD12Q587J7 1177 aaKnown RBP17.04■□□□□ 0.32
LRRK1-207ENST00000531270 CCDC83Q8IWF9 413 aa17.04■□□□□ 0.32
LRRK1-207ENST00000531270 CHD1LQ86WJ1 897 aa17.04■□□□□ 0.32
LRRK1-207ENST00000531270 DZIP1Q86YF9 867 aaKnown RBP17.04■□□□□ 0.32
LRRK1-207ENST00000531270 ZNF644Q9H582 1327 aaPredicted RBP17.04■□□□□ 0.32
LRRK1-207ENST00000531270 RANBP6O60518 1105 aaKnown RBP17.04■□□□□ 0.32
LRRK1-207ENST00000531270 CAVIN4Q5BKX8 364 aa17.04■□□□□ 0.32
LRRK1-207ENST00000531270 ZC3H6P61129 1189 aaKnown RBP17.04■□□□□ 0.32
LRRK1-207ENST00000531270 ZPR1O75312 459 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 MAP3K11Q16584 847 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 IL27Q8NEV9 243 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 VPS36Q86VN1 386 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 MIS18AQ9NYP9 233 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 PUF60Q9UHX1 559 aaKnown RBP17.03■□□□□ 0.32
LRRK1-207ENST00000531270 PABPN1LA6NDY0 278 aaKnown RBP17.03■□□□□ 0.32
LRRK1-207ENST00000531270 PTCD1O75127 700 aaKnown RBP17.03■□□□□ 0.32
LRRK1-207ENST00000531270 KRT32Q14532 448 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 KIF4BQ2VIQ3 1234 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 PPM1EQ8WY54 764 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 ZNF287Q9HBT7 754 aa17.03■□□□□ 0.32
LRRK1-207ENST00000531270 SYCE3A1L190 88 aa17.02■□□□□ 0.32
LRRK1-207ENST00000531270 SLC4A8Q2Y0W8 1093 aa17.02■□□□□ 0.32
LRRK1-207ENST00000531270 KIF5CO60282 957 aa17.02■□□□□ 0.32
LRRK1-207ENST00000531270 NUP88Q99567 741 aaPredicted RBP17.02■□□□□ 0.32
LRRK1-207ENST00000531270 HOMER2Q9NSB8 354 aa17.02■□□□□ 0.32
LRRK1-207ENST00000531270 RRBP1Q9P2E9 1410 aaKnown RBP17.02■□□□□ 0.31
LRRK1-207ENST00000531270 PRPF4BQ13523 1007 aaKnown RBP17.02■□□□□ 0.31
LRRK1-207ENST00000531270 GCOM1H8Y6P7 765 aaPredicted RBP17.01■□□□□ 0.31
LRRK1-207ENST00000531270 URI1O94763 535 aaPredicted RBP17.01■□□□□ 0.31
LRRK1-207ENST00000531270 MYZAPP0CAP1 466 aa17.01■□□□□ 0.31
LRRK1-207ENST00000531270 DDX23Q9BUQ8 820 aaKnown RBP17.01■□□□□ 0.31
LRRK1-207ENST00000531270 ZNF444Q8N0Y2 327 aaPredicted RBP17.01■□□□□ 0.31
LRRK1-207ENST00000531270 PRPF40BQ6NWY9 871 aaKnown RBP17.01■□□□□ 0.31
LRRK1-207ENST00000531270 TMCO5BA8MYB1 307 aa17■□□□□ 0.31
LRRK1-207ENST00000531270 STARD3NLO95772 234 aa17■□□□□ 0.31
LRRK1-207ENST00000531270 SLC12A5Q9H2X9 1139 aa17■□□□□ 0.31
LRRK1-207ENST00000531270 NAPBQ9H115 298 aa17■□□□□ 0.31
LRRK1-207ENST00000531270 SPECC1Q5M775 1068 aa17■□□□□ 0.31
LRRK1-207ENST00000531270 PDCL2Q8N4E4 241 aa17■□□□□ 0.31
LRRK1-207ENST00000531270 SFPQP23246 707 aaKnown RBP eCLIP17■□□□□ 0.31
LRRK1-207ENST00000531270 TCERG1LQ5VWI1 586 aa17■□□□□ 0.31
LRRK1-207ENST00000531270 TMEM266Q2M3C6 531 aa16.99■□□□□ 0.31
LRRK1-207ENST00000531270 ZNF354CQ86Y25 554 aa16.99■□□□□ 0.31
LRRK1-207ENST00000531270 MMRN2Q9H8L6 949 aa16.99■□□□□ 0.31
LRRK1-207ENST00000531270 EXOC6BQ9Y2D4 811 aa16.99■□□□□ 0.31
LRRK1-207ENST00000531270 BOLA2Q9H3K6 86 aa16.99■□□□□ 0.31
LRRK1-207ENST00000531270 GBP3Q9H0R5 595 aa16.99■□□□□ 0.31
LRRK1-207ENST00000531270 POLR3GO15318 223 aaPredicted RBP16.99■□□□□ 0.31
LRRK1-207ENST00000531270 MRPS9P82933 396 aaKnown RBP16.99■□□□□ 0.31
LRRK1-207ENST00000531270 TOP1P11387 765 aaKnown RBP16.98■□□□□ 0.31
LRRK1-207ENST00000531270 PRKCSHP14314 528 aaPredicted RBP16.98■□□□□ 0.31
LRRK1-207ENST00000531270 HLTFQ14527 1009 aaKnown RBP eCLIP16.98■□□□□ 0.31
LRRK1-207ENST00000531270 PTPN14Q15678 1187 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 CTCFLQ8NI51 663 aaPredicted RBP16.98■□□□□ 0.31
LRRK1-207ENST00000531270 PRDM10Q9NQV6 1147 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 SMARCA5O60264 1052 aaPredicted RBP16.98■□□□□ 0.31
LRRK1-207ENST00000531270 LMAN1P49257 510 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 NLRP5P59047 1200 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 VAT1LQ9HCJ6 419 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 ARL1P40616 181 aaPredicted RBP16.98■□□□□ 0.31
LRRK1-207ENST00000531270 GRM1Q13255 1194 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 MYD88Q99836 296 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 PRC1O43663 620 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 IFIT1P09914 478 aaKnown RBP16.98■□□□□ 0.31
LRRK1-207ENST00000531270 FERP16591 822 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 TRERF1Q96PN7 1200 aa16.98■□□□□ 0.31
LRRK1-207ENST00000531270 ZSCAN12O43309 604 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 ATF7IPQ6VMQ6 1270 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 SAMM50Q9Y512 469 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 MAP9Q49MG5 647 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 PKNOX2Q96KN3 472 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 ZNF652Q9Y2D9 606 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 U3KPZ7 1027 aaPredicted RBP16.97■□□□□ 0.31
LRRK1-207ENST00000531270 BRD4O60885 1362 aaPredicted RBP16.97■□□□□ 0.31
LRRK1-207ENST00000531270 MVPQ14764 893 aaKnown RBP16.97■□□□□ 0.31
LRRK1-207ENST00000531270 FEZ1Q99689 392 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 TRMT1Q9NXH9 659 aaKnown RBP16.97■□□□□ 0.31
LRRK1-207ENST00000531270 SSX2IPQ9Y2D8 614 aa16.97■□□□□ 0.31
LRRK1-207ENST00000531270 SLC12A7Q9Y666 1083 aa16.96■□□□□ 0.31
LRRK1-207ENST00000531270 CBX1P83916 185 aa16.96■□□□□ 0.31
LRRK1-207ENST00000531270 PAFAH1B1P43034 410 aa16.96■□□□□ 0.31
LRRK1-207ENST00000531270 CCDC144CPQ8IYA2 1237 aa16.96■□□□□ 0.31
LRRK1-207ENST00000531270 MTIF2P46199 727 aaKnown RBP16.96■□□□□ 0.31
LRRK1-207ENST00000531270 PDE3AQ14432 1141 aa16.96■□□□□ 0.31
LRRK1-207ENST00000531270 RPGRQ92834 1020 aaKnown RBP16.96■□□□□ 0.31
LRRK1-207ENST00000531270 AKAP2Q9Y2D5 859 aa16.96■□□□□ 0.31
LRRK1-207ENST00000531270 CCDC194A0A1B0GVG4 234 aa16.95■□□□□ 0.3
LRRK1-207ENST00000531270 USO1O60763 962 aaKnown RBP16.95■□□□□ 0.3
LRRK1-207ENST00000531270 C8orf76Q96K31 380 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms