RNA–Protein interactions for RNA: ENST00000531243.2

PABPC4-225, Transcript of poly(A) binding protein cytoplasmic 4, human

TSL 4

Gene PABPC4, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC4-225	ENST00000531243	SMARCC1	Q92922	1105 aa	Predicted RBP	27.95	■■■□□ 2.06
PABPC4-225	ENST00000531243	SIPA1L3	O60292	1781 aa	Predicted RBP	27.94	■■■□□ 2.06
PABPC4-225	ENST00000531243	SOCS7	O14512	581 aa		27.94	■■■□□ 2.06
PABPC4-225	ENST00000531243	PIGB	Q92521	554 aa		27.94	■■■□□ 2.06
PABPC4-225	ENST00000531243	PLSCR1	O15162	318 aa		27.93	■■■□□ 2.06
PABPC4-225	ENST00000531243	HMGB2	P26583	209 aa	Known RBP	27.91	■■■□□ 2.06
PABPC4-225	ENST00000531243	CALD1	Q05682	793 aa	Known RBP	27.91	■■■□□ 2.06
PABPC4-225	ENST00000531243	DCTN1	Q14203	1278 aa		27.91	■■■□□ 2.06
PABPC4-225	ENST00000531243	PTF1A	Q7RTS3	328 aa		27.9	■■■□□ 2.06
PABPC4-225	ENST00000531243	CCDC27	Q2M243	656 aa		27.89	■■■□□ 2.06
PABPC4-225	ENST00000531243	LY75	O60449	1722 aa		27.88	■■■□□ 2.05
PABPC4-225	ENST00000531243	TAF7	Q15545	349 aa	Predicted RBP	27.88	■■■□□ 2.05
PABPC4-225	ENST00000531243	TRIM35	Q9UPQ4	493 aa		27.88	■■■□□ 2.05
PABPC4-225	ENST00000531243	BTBD11	A6QL63	1104 aa		27.87	■■■□□ 2.05
PABPC4-225	ENST00000531243	TTC5	Q8N0Z6	440 aa		27.87	■■■□□ 2.05
PABPC4-225	ENST00000531243	EP400	Q96L91	3159 aa		27.87	■■■□□ 2.05
PABPC4-225	ENST00000531243	PALLD	Q8WX93	1383 aa		27.86	■■■□□ 2.05
PABPC4-225	ENST00000531243	EN1	Q05925	392 aa	Predicted RBP	27.85	■■■□□ 2.05
PABPC4-225	ENST00000531243	PAPPA	Q13219	1627 aa		27.85	■■■□□ 2.05
PABPC4-225	ENST00000531243	ATG3	Q9NT62	314 aa		27.84	■■■□□ 2.05
PABPC4-225	ENST00000531243	ASAP1	Q9ULH1	1129 aa		27.84	■■■□□ 2.05
PABPC4-225	ENST00000531243	DEFB132	Q7Z7B7	95 aa		27.83	■■■□□ 2.05
PABPC4-225	ENST00000531243	THUMPD2	Q9BTF0	503 aa	Known RBP	27.83	■■■□□ 2.05
PABPC4-225	ENST00000531243	BABAM1	Q9NWV8	329 aa		27.83	■■■□□ 2.05
PABPC4-225	ENST00000531243	SLC27A3	Q5K4L6	730 aa		27.82	■■■□□ 2.04
PABPC4-225	ENST00000531243	CAMKK2	Q96RR4	588 aa		27.82	■■■□□ 2.04
PABPC4-225	ENST00000531243	EZH2	Q15910	746 aa	Known RBP	27.81	■■■□□ 2.04
PABPC4-225	ENST00000531243	SALL2	Q9Y467	1007 aa	Predicted RBP	27.81	■■■□□ 2.04
PABPC4-225	ENST00000531243	RREB1	Q92766	1687 aa		27.81	■■■□□ 2.04
PABPC4-225	ENST00000531243	TXNRD1	Q16881	649 aa		27.8	■■■□□ 2.04
PABPC4-225	ENST00000531243	ZNF790	Q6PG37	636 aa		27.8	■■■□□ 2.04
PABPC4-225	ENST00000531243	WWC1	Q8IX03	1113 aa		27.8	■■■□□ 2.04
PABPC4-225	ENST00000531243	UBR2	Q8IWV8	1755 aa		27.8	■■■□□ 2.04
PABPC4-225	ENST00000531243	KDM3B	Q7LBC6	1761 aa		27.79	■■■□□ 2.04
PABPC4-225	ENST00000531243	ZNF831	Q5JPB2	1677 aa		27.79	■■■□□ 2.04
PABPC4-225	ENST00000531243	RBM42	Q9BTD8	480 aa	Known RBP	27.79	■■■□□ 2.04
PABPC4-225	ENST00000531243	CCNL1	Q9UK58	526 aa	Predicted RBP	27.79	■■■□□ 2.04
PABPC4-225	ENST00000531243	SLC39A6	Q13433	755 aa		27.78	■■■□□ 2.04
PABPC4-225	ENST00000531243	SENP3-EIF4A1	A0A087X0R7	540 aa		27.77	■■■□□ 2.04
PABPC4-225	ENST00000531243	LOC102724428	A0A0B4J2F2	783 aa		27.77	■■■□□ 2.04
PABPC4-225	ENST00000531243	SIK1	P57059	783 aa		27.77	■■■□□ 2.04
PABPC4-225	ENST00000531243	GNAI1	P63096	354 aa		27.77	■■■□□ 2.04
PABPC4-225	ENST00000531243	WDR63	Q8IWG1	891 aa		27.77	■■■□□ 2.04
PABPC4-225	ENST00000531243	TSPYL4	Q9UJ04	414 aa		27.77	■■■□□ 2.04
PABPC4-225	ENST00000531243	LAS1L	Q9Y4W2	734 aa	Known RBP	27.77	■■■□□ 2.04
PABPC4-225	ENST00000531243	CFAP44	Q96MT7	982 aa		27.76	■■■□□ 2.03
PABPC4-225	ENST00000531243	FMNL2	Q96PY5	1086 aa		27.76	■■■□□ 2.03
PABPC4-225	ENST00000531243	IL16	Q14005	1332 aa		27.75	■■■□□ 2.03
PABPC4-225	ENST00000531243	PTCD1	O75127	700 aa	Known RBP	27.75	■■■□□ 2.03
PABPC4-225	ENST00000531243	ATP6V1A	P38606	617 aa		27.75	■■■□□ 2.03
PABPC4-225	ENST00000531243	IFT57	Q9NWB7	429 aa		27.75	■■■□□ 2.03
PABPC4-225	ENST00000531243	TAF1L	Q8IZX4	1826 aa		27.75	■■■□□ 2.03
PABPC4-225	ENST00000531243	VSIG10	Q8N0Z9	540 aa		27.74	■■■□□ 2.03
PABPC4-225	ENST00000531243	NUP188	Q5SRE5	1749 aa		27.73	■■■□□ 2.03
PABPC4-225	ENST00000531243	C5	P01031	1676 aa		27.73	■■■□□ 2.03
PABPC4-225	ENST00000531243	CHL1	O00533	1208 aa		27.72	■■■□□ 2.03
PABPC4-225	ENST00000531243	NBPF14	Q5TI25	921 aa		27.72	■■■□□ 2.03
PABPC4-225	ENST00000531243	MIS18A	Q9NYP9	233 aa		27.72	■■■□□ 2.03
PABPC4-225	ENST00000531243	KCP	Q6ZWJ8	1503 aa		27.72	■■■□□ 2.03
PABPC4-225	ENST00000531243	CIC	Q96RK0	1608 aa	Predicted RBP	27.71	■■■□□ 2.03
PABPC4-225	ENST00000531243	PROM2	Q8N271	834 aa		27.71	■■■□□ 2.03
PABPC4-225	ENST00000531243	TEX13A	Q9BXU3	409 aa	Predicted RBP	27.71	■■■□□ 2.03
PABPC4-225	ENST00000531243	HNRNPU	Q00839	825 aa	Known RBP eCLIP	27.7	■■■□□ 2.02
PABPC4-225	ENST00000531243	ZNF496	Q96IT1	587 aa	Predicted RBP	27.69	■■■□□ 2.02
PABPC4-225	ENST00000531243	HEG1	Q9ULI3	1381 aa		27.69	■■■□□ 2.02
PABPC4-225	ENST00000531243	ZNF853	P0CG23	659 aa		27.68	■■■□□ 2.02
PABPC4-225	ENST00000531243	KCNQ3	O43525	872 aa		27.67	■■■□□ 2.02
PABPC4-225	ENST00000531243	LRRC4B	Q9NT99	713 aa		27.67	■■■□□ 2.02
PABPC4-225	ENST00000531243	COL5A3	P25940	1745 aa	Predicted RBP	27.67	■■■□□ 2.02
PABPC4-225	ENST00000531243	TJP1	Q07157	1748 aa		27.67	■■■□□ 2.02
PABPC4-225	ENST00000531243	SNRPA1	P09661	255 aa	Known RBP	27.66	■■■□□ 2.02
PABPC4-225	ENST00000531243	EIF4A1	P60842	406 aa	Known RBP	27.66	■■■□□ 2.02
PABPC4-225	ENST00000531243	GOLGA2	Q08379	1002 aa		27.66	■■■□□ 2.02
PABPC4-225	ENST00000531243	MYH16	Q9H6N6	1097 aa		27.66	■■■□□ 2.02
PABPC4-225	ENST00000531243	MBIP	Q9NS73	344 aa		27.65	■■■□□ 2.02
PABPC4-225	ENST00000531243	STK32B	Q9NY57	414 aa		27.65	■■■□□ 2.02
PABPC4-225	ENST00000531243	ZNF521	Q96K83	1311 aa		27.65	■■■□□ 2.02
PABPC4-225	ENST00000531243	STARD3NL	O95772	234 aa		27.64	■■■□□ 2.02
PABPC4-225	ENST00000531243	C4B	P0C0L5	1744 aa		27.64	■■■□□ 2.01
PABPC4-225	ENST00000531243	LAMB4	A4D0S4	1761 aa		27.63	■■■□□ 2.01
PABPC4-225	ENST00000531243	KCNQ4	P56696	695 aa		27.63	■■■□□ 2.01
PABPC4-225	ENST00000531243	SLC4A9	Q96Q91	983 aa		27.63	■■■□□ 2.01
PABPC4-225	ENST00000531243	ITPK1	Q13572	414 aa		27.62	■■■□□ 2.01
PABPC4-225	ENST00000531243	DNAJC10	Q8IXB1	793 aa		27.61	■■■□□ 2.01
PABPC4-225	ENST00000531243	AK7	Q96M32	723 aa		27.61	■■■□□ 2.01
PABPC4-225	ENST00000531243		E9PSI1	815 aa		27.6	■■■□□ 2.01
PABPC4-225	ENST00000531243	CHMP4A	Q9BY43	222 aa		27.6	■■■□□ 2.01
PABPC4-225	ENST00000531243	GIGYF1	O75420	1035 aa	Predicted RBP	27.59	■■■□□ 2.01
PABPC4-225	ENST00000531243	RC3H1	Q5TC82	1133 aa	Known RBP	27.59	■■■□□ 2.01
PABPC4-225	ENST00000531243	LINC00116	Q8NCU8	138 aa		27.59	■■■□□ 2.01
PABPC4-225	ENST00000531243	CNTNAP4	Q9C0A0	1308 aa		27.59	■■■□□ 2.01
PABPC4-225	ENST00000531243	HOXB7	P09629	217 aa		27.58	■■■□□ 2.01
PABPC4-225	ENST00000531243	SLC15A2	Q16348	729 aa		27.58	■■■□□ 2.01
PABPC4-225	ENST00000531243	QSER1	Q2KHR3	1735 aa		27.57	■■■□□ 2
PABPC4-225	ENST00000531243	SOS1	Q07889	1333 aa	Predicted RBP	27.57	■■■□□ 2
PABPC4-225	ENST00000531243	ZBED9	Q6R2W3	1325 aa		27.57	■■■□□ 2
PABPC4-225	ENST00000531243	CYP19A1	P11511	503 aa	Predicted RBP	27.56	■■■□□ 2
PABPC4-225	ENST00000531243	TSR2	Q969E8	191 aa	Known RBP	27.56	■■■□□ 2
PABPC4-225	ENST00000531243	AKT1S1	Q96B36	256 aa		27.56	■■■□□ 2
PABPC4-225	ENST00000531243	TFCP2L1	Q9NZI6	479 aa		27.56	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms