RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 POLD1P28340 1107 aa27.65■■■□□ 2.02
VPS28-206ENST00000526734 ATP6V1AP38606 617 aa27.64■■■□□ 2.02
VPS28-206ENST00000526734 MTHFSDQ2M296 383 aaKnown RBP27.64■■■□□ 2.02
VPS28-206ENST00000526734 MRC1P22897 1456 aa27.64■■■□□ 2.01
VPS28-206ENST00000526734 GAS2L2Q8NHY3 880 aa27.63■■■□□ 2.01
VPS28-206ENST00000526734 ARXQ96QS3 562 aa27.63■■■□□ 2.01
VPS28-206ENST00000526734 SCN11AQ9UI33 1791 aa27.63■■■□□ 2.01
VPS28-206ENST00000526734 COL24A1Q17RW2 1714 aa27.62■■■□□ 2.01
VPS28-206ENST00000526734 COL23A1Q86Y22 540 aaPredicted RBP27.62■■■□□ 2.01
VPS28-206ENST00000526734 MAP3K5Q99683 1374 aa27.61■■■□□ 2.01
VPS28-206ENST00000526734 MSH5O43196 834 aa27.61■■■□□ 2.01
VPS28-206ENST00000526734 SSFA2P28290 1259 aa27.61■■■□□ 2.01
VPS28-206ENST00000526734 ZEB1P37275 1124 aaPredicted RBP27.61■■■□□ 2.01
VPS28-206ENST00000526734 NFATC2IPQ8NCF5 419 aa27.61■■■□□ 2.01
VPS28-206ENST00000526734 LINC00116Q8NCU8 138 aa27.61■■■□□ 2.01
VPS28-206ENST00000526734 SLC52A2Q9HAB3 445 aa27.61■■■□□ 2.01
VPS28-206ENST00000526734 ADAMTS7Q9UKP4 1686 aa27.6■■■□□ 2.01
VPS28-206ENST00000526734 RNMTO43148 476 aaKnown RBP27.6■■■□□ 2.01
VPS28-206ENST00000526734 ITPK1Q13572 414 aa27.6■■■□□ 2.01
VPS28-206ENST00000526734 DCAF8L1A6NGE4 600 aa27.59■■■□□ 2.01
VPS28-206ENST00000526734 RBM42Q9BTD8 480 aaKnown RBP27.59■■■□□ 2.01
VPS28-206ENST00000526734 RSPH6AQ9H0K4 717 aa27.57■■■□□ 2
VPS28-206ENST00000526734 FCHSD2O94868 740 aa27.56■■■□□ 2
VPS28-206ENST00000526734 U2AF1L5P0DN76 240 aaPredicted RBP27.56■■■□□ 2
VPS28-206ENST00000526734 PRKAR2BP31323 418 aa27.56■■■□□ 2
VPS28-206ENST00000526734 U2AF1Q01081 240 aaKnown RBP eCLIP27.56■■■□□ 2
VPS28-206ENST00000526734 RC3H1Q5TC82 1133 aaKnown RBP27.56■■■□□ 2
VPS28-206ENST00000526734 FHDC1Q9C0D6 1143 aaPredicted RBP27.56■■■□□ 2
VPS28-206ENST00000526734 UBR3Q6ZT12 1888 aa27.55■■■□□ 2
VPS28-206ENST00000526734 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.55■■■□□ 2
VPS28-206ENST00000526734 RALBP1Q15311 655 aa27.55■■■□□ 2
VPS28-206ENST00000526734 LGR6Q9HBX8 967 aa27.55■■■□□ 2
VPS28-206ENST00000526734 CNTNAP4Q9C0A0 1308 aa27.55■■■□□ 2
VPS28-206ENST00000526734 CICQ96RK0 1608 aaPredicted RBP27.55■■■□□ 2
VPS28-206ENST00000526734 GNAT3A8MTJ3 354 aa27.54■■■□□ 2
VPS28-206ENST00000526734 GNPATO15228 680 aa27.54■■■□□ 2
VPS28-206ENST00000526734 SLC4A9Q96Q91 983 aa27.54■■■□□ 2
VPS28-206ENST00000526734 SYT17Q9BSW7 474 aa27.54■■■□□ 2
VPS28-206ENST00000526734 PTCD1O75127 700 aaKnown RBP27.52■■■□□ 2
VPS28-206ENST00000526734 PHF14O94880 888 aa27.51■■□□□ 1.99
VPS28-206ENST00000526734 ADRA2BP18089 450 aa27.51■■□□□ 1.99
VPS28-206ENST00000526734 RTCBQ9Y3I0 505 aaKnown RBP27.51■■□□□ 1.99
VPS28-206ENST00000526734 COL5A3P25940 1745 aaPredicted RBP27.5■■□□□ 1.99
VPS28-206ENST00000526734 DDX10Q13206 875 aaKnown RBP27.5■■□□□ 1.99
VPS28-206ENST00000526734 TEFQ10587 303 aa27.49■■□□□ 1.99
VPS28-206ENST00000526734 AMIGO3Q86WK7 504 aa27.48■■□□□ 1.99
VPS28-206ENST00000526734 RPS6KA4O75676 772 aa27.47■■□□□ 1.99
VPS28-206ENST00000526734 NEFMP07197 916 aa27.47■■□□□ 1.99
VPS28-206ENST00000526734 PHACTR3Q96KR7 559 aa27.47■■□□□ 1.99
VPS28-206ENST00000526734 CEMIPQ8WUJ3 1361 aa27.47■■□□□ 1.99
VPS28-206ENST00000526734 MSL1Q68DK7 614 aa27.46■■□□□ 1.99
VPS28-206ENST00000526734 TRAPPC3LQ5T215 181 aa27.45■■□□□ 1.98
VPS28-206ENST00000526734 VSIG10Q8N0Z9 540 aa27.45■■□□□ 1.98
VPS28-206ENST00000526734 IL17REQ8NFR9 667 aa27.45■■□□□ 1.98
VPS28-206ENST00000526734 VIRMAQ69YN4 1812 aaKnown RBP27.45■■□□□ 1.98
VPS28-206ENST00000526734 TTC5Q8N0Z6 440 aa27.44■■□□□ 1.98
VPS28-206ENST00000526734 PNNQ9H307 717 aaKnown RBP27.44■■□□□ 1.98
VPS28-206ENST00000526734 KCPQ6ZWJ8 1503 aa27.44■■□□□ 1.98
VPS28-206ENST00000526734 TJP1Q07157 1748 aa27.44■■□□□ 1.98
VPS28-206ENST00000526734 HTATSF1O43719 755 aaKnown RBP27.43■■□□□ 1.98
VPS28-206ENST00000526734 CRKLP46109 303 aaKnown RBP27.43■■□□□ 1.98
VPS28-206ENST00000526734 SLC39A6Q13433 755 aa27.42■■□□□ 1.98
VPS28-206ENST00000526734 RTF1Q92541 710 aaKnown RBP27.42■■□□□ 1.98
VPS28-206ENST00000526734 MYBBP1AQ9BQG0 1328 aaKnown RBP27.41■■□□□ 1.98
VPS28-206ENST00000526734 KLHL34Q8N239 644 aa27.41■■□□□ 1.98
VPS28-206ENST00000526734 RFC4P35249 363 aa27.39■■□□□ 1.98
VPS28-206ENST00000526734 SMIM5Q71RC9 77 aa27.39■■□□□ 1.98
VPS28-206ENST00000526734 DNAJC10Q8IXB1 793 aa27.39■■□□□ 1.98
VPS28-206ENST00000526734 NLGN1Q8N2Q7 840 aa27.39■■□□□ 1.98
VPS28-206ENST00000526734 CD2APQ9Y5K6 639 aa27.39■■□□□ 1.98
VPS28-206ENST00000526734 UBR2Q8IWV8 1755 aa27.39■■□□□ 1.98
VPS28-206ENST00000526734 ZNF790Q6PG37 636 aa27.38■■□□□ 1.97
VPS28-206ENST00000526734 ARHGEF1Q92888 912 aaKnown RBP27.38■■□□□ 1.97
VPS28-206ENST00000526734 CCDC87Q9NVE4 849 aa27.38■■□□□ 1.97
VPS28-206ENST00000526734 SIPA1L3O60292 1781 aaPredicted RBP27.37■■□□□ 1.97
VPS28-206ENST00000526734 CYP19A1P11511 503 aaPredicted RBP27.36■■□□□ 1.97
VPS28-206ENST00000526734 TEX13AQ9BXU3 409 aaPredicted RBP27.36■■□□□ 1.97
VPS28-206ENST00000526734 INTS5Q6P9B9 1019 aaKnown RBP27.35■■□□□ 1.97
VPS28-206ENST00000526734 MYH14Q7Z406 1995 aaKnown RBP27.35■■□□□ 1.97
VPS28-206ENST00000526734 MAPK8IP3Q9UPT6 1336 aa27.34■■□□□ 1.97
VPS28-206ENST00000526734 HEG1Q9ULI3 1381 aa27.34■■□□□ 1.97
VPS28-206ENST00000526734 BTBD11A6QL63 1104 aa27.33■■□□□ 1.97
VPS28-206ENST00000526734 STARD3NLO95772 234 aa27.33■■□□□ 1.97
VPS28-206ENST00000526734 FMNL2Q96PY5 1086 aa27.33■■□□□ 1.97
VPS28-206ENST00000526734 PLEKHF1Q96S99 279 aa27.33■■□□□ 1.97
VPS28-206ENST00000526734 GYS1P13807 737 aa27.32■■□□□ 1.96
VPS28-206ENST00000526734 ZNF496Q96IT1 587 aaPredicted RBP27.32■■□□□ 1.96
VPS28-206ENST00000526734 SOS1Q07889 1333 aaPredicted RBP27.32■■□□□ 1.96
VPS28-206ENST00000526734 C4AP0C0L4 1744 aa27.31■■□□□ 1.96
VPS28-206ENST00000526734 MMP10P09238 476 aa27.31■■□□□ 1.96
VPS28-206ENST00000526734 NLGN2Q8NFZ4 835 aa27.31■■□□□ 1.96
VPS28-206ENST00000526734 USP42Q9H9J4 1324 aaKnown RBP27.31■■□□□ 1.96
VPS28-206ENST00000526734 NFE2L2Q16236 605 aa27.3■■□□□ 1.96
VPS28-206ENST00000526734 MCM10Q7L590 875 aa27.3■■□□□ 1.96
VPS28-206ENST00000526734 GPR162Q16538 588 aa27.29■■□□□ 1.96
VPS28-206ENST00000526734 PRKRIP1Q9H875 184 aaPredicted RBP27.28■■□□□ 1.96
VPS28-206ENST00000526734 COL15A1P39059 1388 aa27.27■■□□□ 1.96
VPS28-206ENST00000526734 ZBTB1Q9Y2K1 713 aa27.27■■□□□ 1.96
VPS28-206ENST00000526734 ZPR1O75312 459 aa27.26■■□□□ 1.95
VPS28-206ENST00000526734 YY1P25490 414 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms