RNA–Protein interactions for RNA: ENST00000526055.5

TSPAN4-216, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 469 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-216ENST00000526055 ATP6V1AP38606 617 aa24.75■■□□□ 1.55
TSPAN4-216ENST00000526055 COL23A1Q86Y22 540 aaPredicted RBP24.75■■□□□ 1.55
TSPAN4-216ENST00000526055 ARXQ96QS3 562 aa24.75■■□□□ 1.55
TSPAN4-216ENST00000526055 MTHFSDQ2M296 383 aaKnown RBP24.74■■□□□ 1.55
TSPAN4-216ENST00000526055 ZNF831Q5JPB2 1677 aa24.74■■□□□ 1.55
TSPAN4-216ENST00000526055 COL24A1Q17RW2 1714 aa24.73■■□□□ 1.55
TSPAN4-216ENST00000526055 NFATC2IPQ8NCF5 419 aa24.73■■□□□ 1.55
TSPAN4-216ENST00000526055 MAP3K5Q99683 1374 aa24.72■■□□□ 1.55
TSPAN4-216ENST00000526055 SSFA2P28290 1259 aa24.72■■□□□ 1.55
TSPAN4-216ENST00000526055 LINC00116Q8NCU8 138 aa24.72■■□□□ 1.55
TSPAN4-216ENST00000526055 GAS2L2Q8NHY3 880 aa24.72■■□□□ 1.55
TSPAN4-216ENST00000526055 SLC52A2Q9HAB3 445 aa24.72■■□□□ 1.55
TSPAN4-216ENST00000526055 SCN11AQ9UI33 1791 aa24.72■■□□□ 1.55
TSPAN4-216ENST00000526055 RNMTO43148 476 aaKnown RBP24.71■■□□□ 1.55
TSPAN4-216ENST00000526055 MSH5O43196 834 aa24.71■■□□□ 1.55
TSPAN4-216ENST00000526055 ITPK1Q13572 414 aa24.71■■□□□ 1.55
TSPAN4-216ENST00000526055 MRC1P22897 1456 aa24.7■■□□□ 1.55
TSPAN4-216ENST00000526055 DCAF8L1A6NGE4 600 aa24.7■■□□□ 1.54
TSPAN4-216ENST00000526055 RBM42Q9BTD8 480 aaKnown RBP24.7■■□□□ 1.54
TSPAN4-216ENST00000526055 SYT17Q9BSW7 474 aa24.69■■□□□ 1.54
TSPAN4-216ENST00000526055 FHDC1Q9C0D6 1143 aaPredicted RBP24.69■■□□□ 1.54
TSPAN4-216ENST00000526055 RC3H1Q5TC82 1133 aaKnown RBP24.68■■□□□ 1.54
TSPAN4-216ENST00000526055 LGR6Q9HBX8 967 aa24.68■■□□□ 1.54
TSPAN4-216ENST00000526055 ADAMTS7Q9UKP4 1686 aa24.68■■□□□ 1.54
TSPAN4-216ENST00000526055 UBR3Q6ZT12 1888 aa24.67■■□□□ 1.54
TSPAN4-216ENST00000526055 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.67■■□□□ 1.54
TSPAN4-216ENST00000526055 SLC4A9Q96Q91 983 aa24.67■■□□□ 1.54
TSPAN4-216ENST00000526055 RSPH6AQ9H0K4 717 aa24.67■■□□□ 1.54
TSPAN4-216ENST00000526055 CNTNAP4Q9C0A0 1308 aa24.66■■□□□ 1.54
TSPAN4-216ENST00000526055 FCHSD2O94868 740 aa24.66■■□□□ 1.54
TSPAN4-216ENST00000526055 GNAT3A8MTJ3 354 aa24.65■■□□□ 1.54
TSPAN4-216ENST00000526055 GNPATO15228 680 aa24.65■■□□□ 1.54
TSPAN4-216ENST00000526055 U2AF1L5P0DN76 240 aaPredicted RBP24.65■■□□□ 1.54
TSPAN4-216ENST00000526055 PRKAR2BP31323 418 aa24.65■■□□□ 1.54
TSPAN4-216ENST00000526055 ZEB1P37275 1124 aaPredicted RBP24.65■■□□□ 1.54
TSPAN4-216ENST00000526055 U2AF1Q01081 240 aaKnown RBP eCLIP24.65■■□□□ 1.54
TSPAN4-216ENST00000526055 RALBP1Q15311 655 aa24.64■■□□□ 1.54
TSPAN4-216ENST00000526055 PTCD1O75127 700 aaKnown RBP24.63■■□□□ 1.53
TSPAN4-216ENST00000526055 PHF14O94880 888 aa24.63■■□□□ 1.53
TSPAN4-216ENST00000526055 ADRA2BP18089 450 aa24.63■■□□□ 1.53
TSPAN4-216ENST00000526055 AMIGO3Q86WK7 504 aa24.63■■□□□ 1.53
TSPAN4-216ENST00000526055 RTCBQ9Y3I0 505 aaKnown RBP24.63■■□□□ 1.53
TSPAN4-216ENST00000526055 CICQ96RK0 1608 aaPredicted RBP24.61■■□□□ 1.53
TSPAN4-216ENST00000526055 RPS6KA4O75676 772 aa24.6■■□□□ 1.53
TSPAN4-216ENST00000526055 DDX10Q13206 875 aaKnown RBP24.6■■□□□ 1.53
TSPAN4-216ENST00000526055 PHACTR3Q96KR7 559 aa24.6■■□□□ 1.53
TSPAN4-216ENST00000526055 COL5A3P25940 1745 aaPredicted RBP24.6■■□□□ 1.53
TSPAN4-216ENST00000526055 TRAPPC3LQ5T215 181 aa24.59■■□□□ 1.53
TSPAN4-216ENST00000526055 MSL1Q68DK7 614 aa24.59■■□□□ 1.53
TSPAN4-216ENST00000526055 CEMIPQ8WUJ3 1361 aa24.58■■□□□ 1.53
TSPAN4-216ENST00000526055 TEFQ10587 303 aa24.58■■□□□ 1.53
TSPAN4-216ENST00000526055 VSIG10Q8N0Z9 540 aa24.58■■□□□ 1.53
TSPAN4-216ENST00000526055 IL17REQ8NFR9 667 aa24.58■■□□□ 1.53
TSPAN4-216ENST00000526055 VIRMAQ69YN4 1812 aaKnown RBP24.58■■□□□ 1.53
TSPAN4-216ENST00000526055 CRKLP46109 303 aaKnown RBP24.56■■□□□ 1.52
TSPAN4-216ENST00000526055 CHD4Q14839 1912 aa24.55■■□□□ 1.52
TSPAN4-216ENST00000526055 HTATSF1O43719 755 aaKnown RBP24.55■■□□□ 1.52
TSPAN4-216ENST00000526055 NEFMP07197 916 aa24.55■■□□□ 1.52
TSPAN4-216ENST00000526055 SLC39A6Q13433 755 aa24.55■■□□□ 1.52
TSPAN4-216ENST00000526055 TTC5Q8N0Z6 440 aa24.55■■□□□ 1.52
TSPAN4-216ENST00000526055 SMIM5Q71RC9 77 aa24.54■■□□□ 1.52
TSPAN4-216ENST00000526055 PNNQ9H307 717 aaKnown RBP24.54■■□□□ 1.52
TSPAN4-216ENST00000526055 CD2APQ9Y5K6 639 aa24.54■■□□□ 1.52
TSPAN4-216ENST00000526055 KCPQ6ZWJ8 1503 aa24.54■■□□□ 1.52
TSPAN4-216ENST00000526055 TJP1Q07157 1748 aa24.53■■□□□ 1.52
TSPAN4-216ENST00000526055 NLGN1Q8N2Q7 840 aa24.53■■□□□ 1.52
TSPAN4-216ENST00000526055 RTF1Q92541 710 aaKnown RBP24.53■■□□□ 1.52
TSPAN4-216ENST00000526055 ARHGEF1Q92888 912 aaKnown RBP24.53■■□□□ 1.52
TSPAN4-216ENST00000526055 MYH14Q7Z406 1995 aaKnown RBP24.53■■□□□ 1.52
TSPAN4-216ENST00000526055 UTRNP46939 3433 aa24.52■■□□□ 1.52
TSPAN4-216ENST00000526055 RFC4P35249 363 aa24.52■■□□□ 1.52
TSPAN4-216ENST00000526055 DNAJC10Q8IXB1 793 aa24.52■■□□□ 1.52
TSPAN4-216ENST00000526055 KLHL34Q8N239 644 aa24.52■■□□□ 1.52
TSPAN4-216ENST00000526055 YY1P25490 414 aa24.51■■□□□ 1.51
TSPAN4-216ENST00000526055 INTS5Q6P9B9 1019 aaKnown RBP24.51■■□□□ 1.51
TSPAN4-216ENST00000526055 ZNF790Q6PG37 636 aa24.51■■□□□ 1.51
TSPAN4-216ENST00000526055 CYP19A1P11511 503 aaPredicted RBP24.5■■□□□ 1.51
TSPAN4-216ENST00000526055 CCDC87Q9NVE4 849 aa24.5■■□□□ 1.51
TSPAN4-216ENST00000526055 MYBBP1AQ9BQG0 1328 aaKnown RBP24.5■■□□□ 1.51
TSPAN4-216ENST00000526055 UBR2Q8IWV8 1755 aa24.49■■□□□ 1.51
TSPAN4-216ENST00000526055 TEX13AQ9BXU3 409 aaPredicted RBP24.49■■□□□ 1.51
TSPAN4-216ENST00000526055 SIPA1L3O60292 1781 aaPredicted RBP24.48■■□□□ 1.51
TSPAN4-216ENST00000526055 PLEKHF1Q96S99 279 aa24.48■■□□□ 1.51
TSPAN4-216ENST00000526055 STARD3NLO95772 234 aa24.47■■□□□ 1.51
TSPAN4-216ENST00000526055 GYS1P13807 737 aa24.47■■□□□ 1.51
TSPAN4-216ENST00000526055 HEG1Q9ULI3 1381 aa24.46■■□□□ 1.51
TSPAN4-216ENST00000526055 BTBD11A6QL63 1104 aa24.46■■□□□ 1.51
TSPAN4-216ENST00000526055 NLGN2Q8NFZ4 835 aa24.46■■□□□ 1.51
TSPAN4-216ENST00000526055 FMNL2Q96PY5 1086 aa24.46■■□□□ 1.51
TSPAN4-216ENST00000526055 SOS1Q07889 1333 aaPredicted RBP24.45■■□□□ 1.5
TSPAN4-216ENST00000526055 MMP10P09238 476 aa24.45■■□□□ 1.5
TSPAN4-216ENST00000526055 ZNF496Q96IT1 587 aaPredicted RBP24.45■■□□□ 1.5
TSPAN4-216ENST00000526055 USP42Q9H9J4 1324 aaKnown RBP24.44■■□□□ 1.5
TSPAN4-216ENST00000526055 GPR162Q16538 588 aa24.44■■□□□ 1.5
TSPAN4-216ENST00000526055 GOLGB1Q14789 3259 aaKnown RBP24.44■■□□□ 1.5
TSPAN4-216ENST00000526055 MCM10Q7L590 875 aa24.43■■□□□ 1.5
TSPAN4-216ENST00000526055 MAPK8IP3Q9UPT6 1336 aa24.42■■□□□ 1.5
TSPAN4-216ENST00000526055 C4AP0C0L4 1744 aa24.42■■□□□ 1.5
TSPAN4-216ENST00000526055 NFE2L2Q16236 605 aa24.42■■□□□ 1.5
TSPAN4-216ENST00000526055 ZBTB1Q9Y2K1 713 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms