RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 LINC00116Q8NCU8 138 aa12.61□□□□□ -0.39
HDAC3-215ENST00000519474 ARXQ96QS3 562 aa12.61□□□□□ -0.39
HDAC3-215ENST00000519474 TOGARAM1Q9Y4F4 1720 aa12.61□□□□□ -0.39
HDAC3-215ENST00000519474 FHDC1Q9C0D6 1143 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-215ENST00000519474 U2SURPO15042 1029 aaKnown RBP12.59□□□□□ -0.39
HDAC3-215ENST00000519474 RNMTO43148 476 aaKnown RBP12.59□□□□□ -0.39
HDAC3-215ENST00000519474 MSH5O43196 834 aa12.59□□□□□ -0.39
HDAC3-215ENST00000519474 FLAD1Q8NFF5 587 aa12.59□□□□□ -0.39
HDAC3-215ENST00000519474 RBM42Q9BTD8 480 aaKnown RBP12.59□□□□□ -0.39
HDAC3-215ENST00000519474 KDM6AO15550 1401 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-215ENST00000519474 PHACTR3Q96KR7 559 aa12.57□□□□□ -0.4
HDAC3-215ENST00000519474 AK7Q96M32 723 aa12.57□□□□□ -0.4
HDAC3-215ENST00000519474 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.56□□□□□ -0.4
HDAC3-215ENST00000519474 PTCD1O75127 700 aaKnown RBP12.56□□□□□ -0.4
HDAC3-215ENST00000519474 POLD1P28340 1107 aa12.56□□□□□ -0.4
HDAC3-215ENST00000519474 RC3H1Q5TC82 1133 aaKnown RBP12.56□□□□□ -0.4
HDAC3-215ENST00000519474 IL17REQ8NFR9 667 aa12.56□□□□□ -0.4
HDAC3-215ENST00000519474 CFAP53Q96M91 514 aa12.56□□□□□ -0.4
HDAC3-215ENST00000519474 SLC52A2Q9HAB3 445 aa12.56□□□□□ -0.4
HDAC3-215ENST00000519474 COL3A1P02461 1466 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-215ENST00000519474 MSL1Q68DK7 614 aa12.55□□□□□ -0.4
HDAC3-215ENST00000519474 NUDCQ9Y266 331 aa12.55□□□□□ -0.4
HDAC3-215ENST00000519474 TAF1LQ8IZX4 1826 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 GNPATO15228 680 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 RPS6KA4O75676 772 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 PHF14O94880 888 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 SSFA2P28290 1259 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 DDX10Q13206 875 aaKnown RBP12.54□□□□□ -0.4
HDAC3-215ENST00000519474 SLC39A6Q13433 755 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 RSPH6AQ9H0K4 717 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 QSER1Q2KHR3 1735 aa12.54□□□□□ -0.4
HDAC3-215ENST00000519474 DCAF8L1A6NGE4 600 aa12.53□□□□□ -0.4
HDAC3-215ENST00000519474 FCHSD2O94868 740 aa12.53□□□□□ -0.4
HDAC3-215ENST00000519474 U2AF1L5P0DN76 240 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-215ENST00000519474 PRKAR2BP31323 418 aa12.53□□□□□ -0.4
HDAC3-215ENST00000519474 U2AF1Q01081 240 aaKnown RBP eCLIP12.53□□□□□ -0.4
HDAC3-215ENST00000519474 TRAPPC3LQ5T215 181 aa12.53□□□□□ -0.4
HDAC3-215ENST00000519474 ARHGEF1Q92888 912 aaKnown RBP12.53□□□□□ -0.4
HDAC3-215ENST00000519474 TUBGCP6Q96RT7 1819 aa12.53□□□□□ -0.4
HDAC3-215ENST00000519474 C4BP0C0L5 1744 aa12.52□□□□□ -0.41
HDAC3-215ENST00000519474 GNAT3A8MTJ3 354 aa12.52□□□□□ -0.41
HDAC3-215ENST00000519474 RTCBQ9Y3I0 505 aaKnown RBP12.52□□□□□ -0.41
HDAC3-215ENST00000519474 C5P01031 1676 aa12.51□□□□□ -0.41
HDAC3-215ENST00000519474 NCBP3Q53F19 620 aaKnown RBP12.51□□□□□ -0.41
HDAC3-215ENST00000519474 INTS5Q6P9B9 1019 aaKnown RBP12.51□□□□□ -0.41
HDAC3-215ENST00000519474 GAS2L2Q8NHY3 880 aa12.51□□□□□ -0.41
HDAC3-215ENST00000519474 MAP3K5Q99683 1374 aa12.51□□□□□ -0.41
HDAC3-215ENST00000519474 COL24A1Q17RW2 1714 aa12.51□□□□□ -0.41
HDAC3-215ENST00000519474 CRKLP46109 303 aaKnown RBP12.5□□□□□ -0.41
HDAC3-215ENST00000519474 DNAJC10Q8IXB1 793 aa12.5□□□□□ -0.41
HDAC3-215ENST00000519474 KLHL34Q8N239 644 aa12.5□□□□□ -0.41
HDAC3-215ENST00000519474 NLGN2Q8NFZ4 835 aa12.5□□□□□ -0.41
HDAC3-215ENST00000519474 CNTNAP4Q9C0A0 1308 aa12.5□□□□□ -0.41
HDAC3-215ENST00000519474 SCN11AQ9UI33 1791 aa12.49□□□□□ -0.41
HDAC3-215ENST00000519474 CYP19A1P11511 503 aaPredicted RBP12.49□□□□□ -0.41
HDAC3-215ENST00000519474 ADRA2BP18089 450 aa12.48□□□□□ -0.41
HDAC3-215ENST00000519474 NLGN1Q8N2Q7 840 aa12.48□□□□□ -0.41
HDAC3-215ENST00000519474 CD2APQ9Y5K6 639 aa12.48□□□□□ -0.41
HDAC3-215ENST00000519474 UBR3Q6ZT12 1888 aa12.48□□□□□ -0.41
HDAC3-215ENST00000519474 MYH14Q7Z406 1995 aaKnown RBP12.47□□□□□ -0.41
HDAC3-215ENST00000519474 KCNQ3O43525 872 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 GYS1P13807 737 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 YY1P25490 414 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 RFC4P35249 363 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 TEFQ10587 303 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 RALBP1Q15311 655 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 GPR162Q16538 588 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 ZNF790Q6PG37 636 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 VSIG10Q8N0Z9 540 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 PLEKHF1Q96S99 279 aa12.47□□□□□ -0.41
HDAC3-215ENST00000519474 DCTN1Q14203 1278 aa12.46□□□□□ -0.41
HDAC3-215ENST00000519474 ZNF496Q96IT1 587 aaPredicted RBP12.46□□□□□ -0.41
HDAC3-215ENST00000519474 CCDC87Q9NVE4 849 aa12.46□□□□□ -0.41
HDAC3-215ENST00000519474 CEMIPQ8WUJ3 1361 aa12.45□□□□□ -0.42
HDAC3-215ENST00000519474 ZNF831Q5JPB2 1677 aa12.45□□□□□ -0.42
HDAC3-215ENST00000519474 HTATSF1O43719 755 aaKnown RBP12.45□□□□□ -0.42
HDAC3-215ENST00000519474 MMP10P09238 476 aa12.45□□□□□ -0.42
HDAC3-215ENST00000519474 MCM10Q7L590 875 aa12.45□□□□□ -0.42
HDAC3-215ENST00000519474 SRP68Q9UHB9 627 aaKnown RBP12.45□□□□□ -0.42
HDAC3-215ENST00000519474 ADAMTS7Q9UKP4 1686 aa12.45□□□□□ -0.42
HDAC3-215ENST00000519474 BTBD11A6QL63 1104 aa12.44□□□□□ -0.42
HDAC3-215ENST00000519474 TTC5Q8N0Z6 440 aa12.44□□□□□ -0.42
HDAC3-215ENST00000519474 MRC1P22897 1456 aa12.44□□□□□ -0.42
HDAC3-215ENST00000519474 YBX3P16989 372 aaKnown RBP eCLIP12.43□□□□□ -0.423e-8■■□□□ 12.1
HDAC3-215ENST00000519474 TM4SF1P30408 202 aa12.43□□□□□ -0.42
HDAC3-215ENST00000519474 FKBP8Q14318 412 aa12.43□□□□□ -0.42
HDAC3-215ENST00000519474 TAF7Q15545 349 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-215ENST00000519474 RTF1Q92541 710 aaKnown RBP12.43□□□□□ -0.42
HDAC3-215ENST00000519474 TEX13AQ9BXU3 409 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-215ENST00000519474 ZBTB1Q9Y2K1 713 aa12.43□□□□□ -0.42
HDAC3-215ENST00000519474 USP16Q9Y5T5 823 aa12.43□□□□□ -0.42
HDAC3-215ENST00000519474 SOS1Q07889 1333 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-215ENST00000519474 STARD3NLO95772 234 aa12.42□□□□□ -0.42
HDAC3-215ENST00000519474 CANXP27824 592 aaKnown RBP12.42□□□□□ -0.42
HDAC3-215ENST00000519474 FMNL2Q96PY5 1086 aa12.42□□□□□ -0.42
HDAC3-215ENST00000519474 HEG1Q9ULI3 1381 aa12.42□□□□□ -0.42
HDAC3-215ENST00000519474 KCPQ6ZWJ8 1503 aa12.42□□□□□ -0.42
HDAC3-215ENST00000519474 USP42Q9H9J4 1324 aaKnown RBP12.41□□□□□ -0.42
HDAC3-215ENST00000519474 A1BGP04217 495 aa12.41□□□□□ -0.42
HDAC3-215ENST00000519474 COL5A3P25940 1745 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms