RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	TUBGCP6	Q96RT7	1819 aa		33.01	■■■□□ 2.87
PVT1-204	ENST00000517525	RNMT	O43148	476 aa	Known RBP	33.01	■■■□□ 2.87
PVT1-204	ENST00000517525	ATP6V1A	P38606	617 aa		33.01	■■■□□ 2.87
PVT1-204	ENST00000517525	ITPK1	Q13572	414 aa		33.01	■■■□□ 2.87
PVT1-204	ENST00000517525	COL23A1	Q86Y22	540 aa	Predicted RBP	33.01	■■■□□ 2.87
PVT1-204	ENST00000517525	GAS2L2	Q8NHY3	880 aa		33.01	■■■□□ 2.87
PVT1-204	ENST00000517525	RSPH6A	Q9H0K4	717 aa		33.01	■■■□□ 2.87
PVT1-204	ENST00000517525	C4B	P0C0L5	1744 aa		33	■■■□□ 2.87
PVT1-204	ENST00000517525	LINC00116	Q8NCU8	138 aa		33	■■■□□ 2.87
PVT1-204	ENST00000517525	SLC52A2	Q9HAB3	445 aa		33	■■■□□ 2.87
PVT1-204	ENST00000517525	SCN11A	Q9UI33	1791 aa		33	■■■□□ 2.87
PVT1-204	ENST00000517525	ADAMTS7	Q9UKP4	1686 aa		33	■■■□□ 2.87
PVT1-204	ENST00000517525	MRC1	P22897	1456 aa		32.99	■■■□□ 2.87
PVT1-204	ENST00000517525	SLC4A9	Q96Q91	983 aa		32.99	■■■□□ 2.87
PVT1-204	ENST00000517525	LGR6	Q9HBX8	967 aa		32.99	■■■□□ 2.87
PVT1-204	ENST00000517525	FCHSD2	O94868	740 aa		32.98	■■■□□ 2.87
PVT1-204	ENST00000517525	RALBP1	Q15311	655 aa		32.98	■■■□□ 2.87
PVT1-204	ENST00000517525	COL24A1	Q17RW2	1714 aa		32.98	■■■□□ 2.87
PVT1-204	ENST00000517525	AK7	Q96M32	723 aa		32.98	■■■□□ 2.87
PVT1-204	ENST00000517525	DDX10	Q13206	875 aa	Known RBP	32.97	■■■□□ 2.87
PVT1-204	ENST00000517525	SSFA2	P28290	1259 aa		32.95	■■■□□ 2.87
PVT1-204	ENST00000517525	PRKAR2B	P31323	418 aa		32.95	■■■□□ 2.87
PVT1-204	ENST00000517525	RC3H1	Q5TC82	1133 aa	Known RBP	32.95	■■■□□ 2.87
PVT1-204	ENST00000517525	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.94	■■■□□ 2.86
PVT1-204	ENST00000517525	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.94	■■■□□ 2.86
PVT1-204	ENST00000517525	ARX	Q96QS3	562 aa		32.94	■■■□□ 2.86
PVT1-204	ENST00000517525	MAP3K5	Q99683	1374 aa		32.94	■■■□□ 2.86
PVT1-204	ENST00000517525	PHACTR3	Q96KR7	559 aa		32.93	■■■□□ 2.86
PVT1-204	ENST00000517525	RBM42	Q9BTD8	480 aa	Known RBP	32.93	■■■□□ 2.86
PVT1-204	ENST00000517525	GNAT3	A8MTJ3	354 aa		32.92	■■■□□ 2.86
PVT1-204	ENST00000517525	POLD1	P28340	1107 aa		32.91	■■■□□ 2.86
PVT1-204	ENST00000517525	AMIGO3	Q86WK7	504 aa		32.91	■■■□□ 2.86
PVT1-204	ENST00000517525	CNTNAP4	Q9C0A0	1308 aa		32.9	■■■□□ 2.86
PVT1-204	ENST00000517525	UBR3	Q6ZT12	1888 aa		32.89	■■■□□ 2.86
PVT1-204	ENST00000517525	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.89	■■■□□ 2.86
PVT1-204	ENST00000517525	IL17RE	Q8NFR9	667 aa		32.89	■■■□□ 2.86
PVT1-204	ENST00000517525	MSH5	O43196	834 aa		32.88	■■■□□ 2.85
PVT1-204	ENST00000517525	SYT17	Q9BSW7	474 aa		32.88	■■■□□ 2.85
PVT1-204	ENST00000517525	PTCD1	O75127	700 aa	Known RBP	32.87	■■■□□ 2.85
PVT1-204	ENST00000517525	FHDC1	Q9C0D6	1143 aa	Predicted RBP	32.87	■■■□□ 2.85
PVT1-204	ENST00000517525	CIC	Q96RK0	1608 aa	Predicted RBP	32.87	■■■□□ 2.85
PVT1-204	ENST00000517525	CEMIP	Q8WUJ3	1361 aa		32.86	■■■□□ 2.85
PVT1-204	ENST00000517525	GNPAT	O15228	680 aa		32.86	■■■□□ 2.85
PVT1-204	ENST00000517525	ADRA2B	P18089	450 aa		32.84	■■■□□ 2.85
PVT1-204	ENST00000517525	RPS6KA4	O75676	772 aa		32.82	■■■□□ 2.84
PVT1-204	ENST00000517525	VSIG10	Q8N0Z9	540 aa		32.82	■■■□□ 2.84
PVT1-204	ENST00000517525	RTCB	Q9Y3I0	505 aa	Known RBP	32.82	■■■□□ 2.84
PVT1-204	ENST00000517525	COL5A3	P25940	1745 aa	Predicted RBP	32.82	■■■□□ 2.84
PVT1-204	ENST00000517525	HTATSF1	O43719	755 aa	Known RBP	32.81	■■■□□ 2.84
PVT1-204	ENST00000517525	PHF14	O94880	888 aa		32.8	■■■□□ 2.84
PVT1-204	ENST00000517525	TEF	Q10587	303 aa		32.8	■■■□□ 2.84
PVT1-204	ENST00000517525	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.79	■■■□□ 2.84
PVT1-204	ENST00000517525	KCP	Q6ZWJ8	1503 aa		32.79	■■■□□ 2.84
PVT1-204	ENST00000517525	SLC39A6	Q13433	755 aa		32.79	■■■□□ 2.84
PVT1-204	ENST00000517525	TRAPPC3L	Q5T215	181 aa		32.78	■■■□□ 2.84
PVT1-204	ENST00000517525	SMIM5	Q71RC9	77 aa		32.78	■■■□□ 2.84
PVT1-204	ENST00000517525	VIRMA	Q69YN4	1812 aa	Known RBP	32.78	■■■□□ 2.84
PVT1-204	ENST00000517525	CRKL	P46109	303 aa	Known RBP	32.77	■■■□□ 2.84
PVT1-204	ENST00000517525	PLEKHF1	Q96S99	279 aa		32.77	■■■□□ 2.84
PVT1-204	ENST00000517525	PNN	Q9H307	717 aa	Known RBP	32.77	■■■□□ 2.84
PVT1-204	ENST00000517525	MSL1	Q68DK7	614 aa		32.76	■■■□□ 2.83
PVT1-204	ENST00000517525	TJP1	Q07157	1748 aa		32.75	■■■□□ 2.83
PVT1-204	ENST00000517525	DCAF8L1	A6NGE4	600 aa		32.74	■■■□□ 2.83
PVT1-204	ENST00000517525	INTS5	Q6P9B9	1019 aa	Known RBP	32.74	■■■□□ 2.83
PVT1-204	ENST00000517525	ZNF790	Q6PG37	636 aa		32.74	■■■□□ 2.83
PVT1-204	ENST00000517525	DNAJC10	Q8IXB1	793 aa		32.74	■■■□□ 2.83
PVT1-204	ENST00000517525	ARHGEF1	Q92888	912 aa	Known RBP	32.74	■■■□□ 2.83
PVT1-204	ENST00000517525	MYH14	Q7Z406	1995 aa	Known RBP	32.74	■■■□□ 2.83
PVT1-204	ENST00000517525	TTC5	Q8N0Z6	440 aa		32.73	■■■□□ 2.83
PVT1-204	ENST00000517525	RTF1	Q92541	710 aa	Known RBP	32.73	■■■□□ 2.83
PVT1-204	ENST00000517525	NEFM	P07197	916 aa		32.72	■■■□□ 2.83
PVT1-204	ENST00000517525	CYP19A1	P11511	503 aa	Predicted RBP	32.72	■■■□□ 2.83
PVT1-204	ENST00000517525	SIPA1L3	O60292	1781 aa	Predicted RBP	32.72	■■■□□ 2.83
PVT1-204	ENST00000517525	UBR2	Q8IWV8	1755 aa		32.71	■■■□□ 2.83
PVT1-204	ENST00000517525	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.71	■■■□□ 2.83
PVT1-204	ENST00000517525	CCDC87	Q9NVE4	849 aa		32.7	■■■□□ 2.83
PVT1-204	ENST00000517525	NLGN1	Q8N2Q7	840 aa		32.69	■■■□□ 2.82
PVT1-204	ENST00000517525	CD2AP	Q9Y5K6	639 aa		32.69	■■■□□ 2.82
PVT1-204	ENST00000517525	ZNF496	Q96IT1	587 aa	Predicted RBP	32.68	■■■□□ 2.82
PVT1-204	ENST00000517525	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.68	■■■□□ 2.82
PVT1-204	ENST00000517525	RFC4	P35249	363 aa		32.67	■■■□□ 2.82
PVT1-204	ENST00000517525	HEG1	Q9ULI3	1381 aa		32.67	■■■□□ 2.82
PVT1-204	ENST00000517525	BTBD11	A6QL63	1104 aa		32.66	■■■□□ 2.82
PVT1-204	ENST00000517525	NFE2L2	Q16236	605 aa		32.66	■■■□□ 2.82
PVT1-204	ENST00000517525	MCM10	Q7L590	875 aa		32.66	■■■□□ 2.82
PVT1-204	ENST00000517525	FMNL2	Q96PY5	1086 aa		32.65	■■■□□ 2.82
PVT1-204	ENST00000517525	SOS1	Q07889	1333 aa	Predicted RBP	32.65	■■■□□ 2.82
PVT1-204	ENST00000517525	STARD3NL	O95772	234 aa		32.64	■■■□□ 2.82
PVT1-204	ENST00000517525	GYS1	P13807	737 aa		32.64	■■■□□ 2.82
PVT1-204	ENST00000517525	USP42	Q9H9J4	1324 aa	Known RBP	32.61	■■■□□ 2.81
PVT1-204	ENST00000517525	MAPK8IP3	Q9UPT6	1336 aa		32.61	■■■□□ 2.81
PVT1-204	ENST00000517525	DCTN1	Q14203	1278 aa		32.6	■■■□□ 2.81
PVT1-204	ENST00000517525	TAF7	Q15545	349 aa	Predicted RBP	32.6	■■■□□ 2.81
PVT1-204	ENST00000517525	NLGN2	Q8NFZ4	835 aa		32.6	■■■□□ 2.81
PVT1-204	ENST00000517525	MMP10	P09238	476 aa		32.59	■■■□□ 2.81
PVT1-204	ENST00000517525	KLHL34	Q8N239	644 aa		32.59	■■■□□ 2.81
PVT1-204	ENST00000517525	ZBTB1	Q9Y2K1	713 aa		32.59	■■■□□ 2.81
PVT1-204	ENST00000517525	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.58	■■■□□ 2.81
PVT1-204	ENST00000517525	KCNQ3	O43525	872 aa		32.58	■■■□□ 2.81
PVT1-204	ENST00000517525	C4A	P0C0L4	1744 aa		32.57	■■■□□ 2.8

Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms