RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 FAM173BQ6P4H8 233 aa16.3■□□□□ 0.2
GPC1-209ENST00000495100 AACSQ86V21 672 aa16.3■□□□□ 0.2
GPC1-209ENST00000495100 SPC24Q8NBT2 197 aa16.3■□□□□ 0.2
GPC1-209ENST00000495100 ARHGAP45Q92619 1136 aa16.3■□□□□ 0.2
GPC1-209ENST00000495100 NEUROD6Q96NK8 337 aa16.3■□□□□ 0.2
GPC1-209ENST00000495100 NSFL1CQ9UNZ2 370 aaKnown RBP16.3■□□□□ 0.2
GPC1-209ENST00000495100 UHRF1BP1LA0JNW5 1464 aa16.3■□□□□ 0.2
GPC1-209ENST00000495100 CHRNA2Q15822 529 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 DRC7Q8IY82 874 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 ABCC3O15438 1527 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 CASTP20810 708 aaKnown RBP16.29■□□□□ 0.2
GPC1-209ENST00000495100 MROH2AA6NES4 1674 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 ATP5J2-PTCD1G3V325 749 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 PTCD1O75127 700 aaKnown RBP16.29■□□□□ 0.2
GPC1-209ENST00000495100 STK11IPQ8N1F8 1099 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 IL17REQ8NFR9 667 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 ROBO2Q9HCK4 1378 aa16.29■□□□□ 0.2
GPC1-209ENST00000495100 CAMK4Q16566 473 aa16.28■□□□□ 0.2
GPC1-209ENST00000495100 JAKMIP1Q96N16 626 aaKnown RBP16.28■□□□□ 0.2
GPC1-209ENST00000495100 SMC3Q9UQE7 1217 aa16.28■□□□□ 0.2
GPC1-209ENST00000495100 ABCC4O15439 1325 aa16.28■□□□□ 0.2
GPC1-209ENST00000495100 ZSCAN23Q3MJ62 389 aa16.28■□□□□ 0.2
GPC1-209ENST00000495100 GLI2P10070 1586 aa16.28■□□□□ 0.2
GPC1-209ENST00000495100 QRICH2Q9H0J4 1663 aa16.28■□□□□ 0.2
GPC1-209ENST00000495100 CLASRPQ8N2M8 674 aaKnown RBP16.28■□□□□ 0.2
GPC1-209ENST00000495100 LRRC2Q9BYS8 371 aa16.27■□□□□ 0.2
GPC1-209ENST00000495100 FAM177BA6PVY3 158 aa16.27■□□□□ 0.2
GPC1-209ENST00000495100 EDC3Q96F86 508 aaKnown RBP16.27■□□□□ 0.2
GPC1-209ENST00000495100 FSD1Q9BTV5 496 aa16.27■□□□□ 0.19
GPC1-209ENST00000495100 DDX11Q96FC9 970 aa16.26■□□□□ 0.19
GPC1-209ENST00000495100 G3BP1Q13283 466 aaKnown RBP eCLIP16.26■□□□□ 0.19
GPC1-209ENST00000495100 ORAI2Q96SN7 254 aa16.26■□□□□ 0.19
GPC1-209ENST00000495100 ERBB4Q15303 1308 aa16.26■□□□□ 0.19
GPC1-209ENST00000495100 RBSNQ9H1K0 784 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 MAP3K2Q9Y2U5 619 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 AK9Q5TCS8 1911 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 ZNF853P0CG23 659 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 ESYT1Q9BSJ8 1104 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 TFIP11Q9UBB9 837 aaKnown RBP16.25■□□□□ 0.19
GPC1-209ENST00000495100 RTL1A6NKG5 1358 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 GADD45BO75293 160 aaPredicted RBP16.25■□□□□ 0.19
GPC1-209ENST00000495100 SNX21Q969T3 373 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 KIDINS220Q9ULH0 1771 aa16.25■□□□□ 0.19
GPC1-209ENST00000495100 NBPF6Q5VWK0 638 aa16.24■□□□□ 0.19
GPC1-209ENST00000495100 RAB11FIP4Q86YS3 637 aa16.24■□□□□ 0.19
GPC1-209ENST00000495100 NBPF4Q96M43 638 aa16.24■□□□□ 0.19
GPC1-209ENST00000495100 C17orf53Q8N3J3 647 aaPredicted RBP16.24■□□□□ 0.19
GPC1-209ENST00000495100 RHPN1Q8TCX5 695 aa16.24■□□□□ 0.19
GPC1-209ENST00000495100 PHF8Q9UPP1 1060 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 CNPY2Q9Y2B0 182 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 MYOM1P52179 1685 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 TNRQ92752 1358 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 PUS7Q96PZ0 661 aaKnown RBP16.23■□□□□ 0.19
GPC1-209ENST00000495100 CIZ1Q9ULV3 898 aaPredicted RBP16.23■□□□□ 0.19
GPC1-209ENST00000495100 SHROOM2Q13796 1616 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 HOXC9P31274 260 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 PROSER3Q2NL68 480 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 DNAAF4Q8WXU2 420 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 IL25Q9H293 177 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 USP25Q9UHP3 1055 aa16.23■□□□□ 0.19
GPC1-209ENST00000495100 USP44Q9H0E7 712 aa16.22■□□□□ 0.19
GPC1-209ENST00000495100 LRRC7Q96NW7 1537 aa16.22■□□□□ 0.19
GPC1-209ENST00000495100 CHMLP26374 656 aa16.22■□□□□ 0.19
GPC1-209ENST00000495100 CNTROBQ8N137 903 aa16.22■□□□□ 0.19
GPC1-209ENST00000495100 ADGRB3O60242 1522 aa16.22■□□□□ 0.19
GPC1-209ENST00000495100 SYTL4Q96C24 671 aaPredicted RBP16.21■□□□□ 0.19
GPC1-209ENST00000495100 CHMP4CQ96CF2 233 aa16.21■□□□□ 0.19
GPC1-209ENST00000495100 TMEM63CQ9P1W3 806 aa16.21■□□□□ 0.19
GPC1-209ENST00000495100 ADGRB1O14514 1584 aa16.21■□□□□ 0.19
GPC1-209ENST00000495100 PTPRCP08575 1304 aa16.21■□□□□ 0.19
GPC1-209ENST00000495100 THEMISQ8N1K5 641 aaPredicted RBP16.21■□□□□ 0.19
GPC1-209ENST00000495100 RAPGEF4Q8WZA2 1011 aa16.21■□□□□ 0.19
GPC1-209ENST00000495100 IQSEC2Q5JU85 1478 aa16.21■□□□□ 0.18
GPC1-209ENST00000495100 GUCY1B3Q02153 619 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 GIMAP6Q6P9H5 292 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 FAM135BQ49AJ0 1406 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 EDC4Q6P2E9 1401 aaKnown RBP16.2■□□□□ 0.18
GPC1-209ENST00000495100 GORABQ5T7V8 394 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 MLH3Q9UHC1 1453 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 SOS1Q07889 1333 aaPredicted RBP16.2■□□□□ 0.18
GPC1-209ENST00000495100 HCLS1P14317 486 aaPredicted RBP16.2■□□□□ 0.18
GPC1-209ENST00000495100 CKAP2LQ8IYA6 745 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 TSC1Q92574 1164 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 CAMSAP1Q5T5Y3 1602 aa16.2■□□□□ 0.18
GPC1-209ENST00000495100 KLHL40Q2TBA0 621 aa16.19■□□□□ 0.18
GPC1-209ENST00000495100 MYD88Q99836 296 aa16.19■□□□□ 0.18
GPC1-209ENST00000495100 ZKSCAN1P17029 563 aaPredicted RBP16.19■□□□□ 0.18
GPC1-209ENST00000495100 ATP8B2P98198 1209 aa16.19■□□□□ 0.18
GPC1-209ENST00000495100 PROSER2Q86WR7 435 aaPredicted RBP16.19■□□□□ 0.18
GPC1-209ENST00000495100 GPT2Q8TD30 523 aa16.19■□□□□ 0.18
GPC1-209ENST00000495100 STRN4Q9NRL3 753 aa16.19■□□□□ 0.18
GPC1-209ENST00000495100 TTC5Q8N0Z6 440 aa16.19■□□□□ 0.18
GPC1-209ENST00000495100 GPATCH3Q96I76 525 aa16.18■□□□□ 0.18
GPC1-209ENST00000495100 USP48Q86UV5 1035 aa16.18■□□□□ 0.18
GPC1-209ENST00000495100 LMBRD1Q9NUN5 540 aa16.18■□□□□ 0.18
GPC1-209ENST00000495100 CHGBP05060 677 aa16.18■□□□□ 0.18
GPC1-209ENST00000495100 NEXNQ0ZGT2 675 aa16.18■□□□□ 0.18
GPC1-209ENST00000495100 CHST3Q7LGC8 479 aa16.18■□□□□ 0.18
GPC1-209ENST00000495100 RASEFQ8IZ41 740 aa16.18■□□□□ 0.18
GPC1-209ENST00000495100 FAM227BQ96M60 508 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms