RNA–Protein interactions for RNA: ENST00000494800.1

HDAC4-211, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 451 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-211ENST00000494800 RALBP1Q15311 655 aa23.58■■□□□ 1.37
HDAC4-211ENST00000494800 NFATC2IPQ8NCF5 419 aa23.58■■□□□ 1.37
HDAC4-211ENST00000494800 FLAD1Q8NFF5 587 aa23.58■■□□□ 1.37
HDAC4-211ENST00000494800 QSER1Q2KHR3 1735 aa23.56■■□□□ 1.36
HDAC4-211ENST00000494800 RBM42Q9BTD8 480 aaKnown RBP23.56■■□□□ 1.36
HDAC4-211ENST00000494800 PRKAR2BP31323 418 aa23.55■■□□□ 1.36
HDAC4-211ENST00000494800 RNMTO43148 476 aaKnown RBP23.54■■□□□ 1.36
HDAC4-211ENST00000494800 FCHSD2O94868 740 aa23.54■■□□□ 1.36
HDAC4-211ENST00000494800 POLD1P28340 1107 aa23.54■■□□□ 1.36
HDAC4-211ENST00000494800 RSPH6AQ9H0K4 717 aa23.54■■□□□ 1.36
HDAC4-211ENST00000494800 SLC52A2Q9HAB3 445 aa23.54■■□□□ 1.36
HDAC4-211ENST00000494800 NEFMP07197 916 aa23.53■■□□□ 1.36
HDAC4-211ENST00000494800 PTGER2P43116 358 aa23.53■■□□□ 1.36
HDAC4-211ENST00000494800 C4BP0C0L5 1744 aa23.53■■□□□ 1.36
HDAC4-211ENST00000494800 MAP3K5Q99683 1374 aa23.52■■□□□ 1.36
HDAC4-211ENST00000494800 GNAT3A8MTJ3 354 aa23.52■■□□□ 1.36
HDAC4-211ENST00000494800 LINC00116Q8NCU8 138 aa23.52■■□□□ 1.36
HDAC4-211ENST00000494800 LGR6Q9HBX8 967 aa23.52■■□□□ 1.36
HDAC4-211ENST00000494800 SCN11AQ9UI33 1791 aa23.51■■□□□ 1.35
HDAC4-211ENST00000494800 ITPK1Q13572 414 aa23.51■■□□□ 1.35
HDAC4-211ENST00000494800 TAF1LQ8IZX4 1826 aa23.5■■□□□ 1.35
HDAC4-211ENST00000494800 PTCD1O75127 700 aaKnown RBP23.5■■□□□ 1.35
HDAC4-211ENST00000494800 COL23A1Q86Y22 540 aaPredicted RBP23.5■■□□□ 1.35
HDAC4-211ENST00000494800 SSFA2P28290 1259 aa23.49■■□□□ 1.35
HDAC4-211ENST00000494800 TEFQ10587 303 aa23.49■■□□□ 1.35
HDAC4-211ENST00000494800 ARXQ96QS3 562 aa23.49■■□□□ 1.35
HDAC4-211ENST00000494800 MRC1P22897 1456 aa23.49■■□□□ 1.35
HDAC4-211ENST00000494800 TUBGCP6Q96RT7 1819 aa23.48■■□□□ 1.35
HDAC4-211ENST00000494800 DCAF8L1A6NGE4 600 aa23.48■■□□□ 1.35
HDAC4-211ENST00000494800 GNPATO15228 680 aa23.48■■□□□ 1.35
HDAC4-211ENST00000494800 SGIP1Q9BQI5 828 aa23.48■■□□□ 1.35
HDAC4-211ENST00000494800 PNNQ9H307 717 aaKnown RBP23.48■■□□□ 1.35
HDAC4-211ENST00000494800 PHF14O94880 888 aa23.47■■□□□ 1.35
HDAC4-211ENST00000494800 PHACTR3Q96KR7 559 aa23.47■■□□□ 1.35
HDAC4-211ENST00000494800 ZNF831Q5JPB2 1677 aa23.47■■□□□ 1.35
HDAC4-211ENST00000494800 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.46■■□□□ 1.35
HDAC4-211ENST00000494800 RTF1Q92541 710 aaKnown RBP23.46■■□□□ 1.35
HDAC4-211ENST00000494800 MYBBP1AQ9BQG0 1328 aaKnown RBP23.46■■□□□ 1.35
HDAC4-211ENST00000494800 RC3H1Q5TC82 1133 aaKnown RBP23.45■■□□□ 1.34
HDAC4-211ENST00000494800 TTC5Q8N0Z6 440 aa23.45■■□□□ 1.34
HDAC4-211ENST00000494800 SLC4A9Q96Q91 983 aa23.45■■□□□ 1.34
HDAC4-211ENST00000494800 RTCBQ9Y3I0 505 aaKnown RBP23.45■■□□□ 1.34
HDAC4-211ENST00000494800 ADAMTS7Q9UKP4 1686 aa23.44■■□□□ 1.34
HDAC4-211ENST00000494800 CNTNAP4Q9C0A0 1308 aa23.44■■□□□ 1.34
HDAC4-211ENST00000494800 FHDC1Q9C0D6 1143 aaPredicted RBP23.43■■□□□ 1.34
HDAC4-211ENST00000494800 IL17REQ8NFR9 667 aa23.42■■□□□ 1.34
HDAC4-211ENST00000494800 ADRA2BP18089 450 aa23.41■■□□□ 1.34
HDAC4-211ENST00000494800 SLC39A6Q13433 755 aa23.41■■□□□ 1.34
HDAC4-211ENST00000494800 TRAPPC3LQ5T215 181 aa23.41■■□□□ 1.34
HDAC4-211ENST00000494800 MAPK8IP3Q9UPT6 1336 aa23.4■■□□□ 1.34
HDAC4-211ENST00000494800 HTATSF1O43719 755 aaKnown RBP23.4■■□□□ 1.34
HDAC4-211ENST00000494800 MSL1Q68DK7 614 aa23.4■■□□□ 1.34
HDAC4-211ENST00000494800 UBR3Q6ZT12 1888 aa23.39■■□□□ 1.34
HDAC4-211ENST00000494800 VSIG10Q8N0Z9 540 aa23.39■■□□□ 1.33
HDAC4-211ENST00000494800 SYT17Q9BSW7 474 aa23.39■■□□□ 1.33
HDAC4-211ENST00000494800 CEMIPQ8WUJ3 1361 aa23.39■■□□□ 1.33
HDAC4-211ENST00000494800 RPS6KA4O75676 772 aa23.38■■□□□ 1.33
HDAC4-211ENST00000494800 AMIGO3Q86WK7 504 aa23.38■■□□□ 1.33
HDAC4-211ENST00000494800 KLHL34Q8N239 644 aa23.38■■□□□ 1.33
HDAC4-211ENST00000494800 COL5A3P25940 1745 aaPredicted RBP23.37■■□□□ 1.33
HDAC4-211ENST00000494800 CRKLP46109 303 aaKnown RBP23.37■■□□□ 1.33
HDAC4-211ENST00000494800 VIRMAQ69YN4 1812 aaKnown RBP23.37■■□□□ 1.33
HDAC4-211ENST00000494800 COL24A1Q17RW2 1714 aa23.36■■□□□ 1.33
HDAC4-211ENST00000494800 BTBD11A6QL63 1104 aa23.36■■□□□ 1.33
HDAC4-211ENST00000494800 RFC4P35249 363 aa23.36■■□□□ 1.33
HDAC4-211ENST00000494800 ZNF790Q6PG37 636 aa23.36■■□□□ 1.33
HDAC4-211ENST00000494800 SMIM5Q71RC9 77 aa23.36■■□□□ 1.33
HDAC4-211ENST00000494800 PRKRIP1Q9H875 184 aaPredicted RBP23.36■■□□□ 1.33
HDAC4-211ENST00000494800 CICQ96RK0 1608 aaPredicted RBP23.36■■□□□ 1.33
HDAC4-211ENST00000494800 ZNF316A6NFI3 1004 aaPredicted RBP23.35■■□□□ 1.33
HDAC4-211ENST00000494800 DNAJC10Q8IXB1 793 aa23.35■■□□□ 1.33
HDAC4-211ENST00000494800 KCPQ6ZWJ8 1503 aa23.34■■□□□ 1.33
HDAC4-211ENST00000494800 WDR43Q15061 677 aaKnown RBP eCLIP23.34■■□□□ 1.33
HDAC4-211ENST00000494800 MCM10Q7L590 875 aa23.34■■□□□ 1.33
HDAC4-211ENST00000494800 PLEKHF1Q96S99 279 aa23.34■■□□□ 1.33
HDAC4-211ENST00000494800 CCDC87Q9NVE4 849 aa23.34■■□□□ 1.33
HDAC4-211ENST00000494800 STARD3NLO95772 234 aa23.33■■□□□ 1.33
HDAC4-211ENST00000494800 ARHGEF1Q92888 912 aaKnown RBP23.33■■□□□ 1.33
HDAC4-211ENST00000494800 FMNL2Q96PY5 1086 aa23.33■■□□□ 1.33
HDAC4-211ENST00000494800 TEX13AQ9BXU3 409 aaPredicted RBP23.33■■□□□ 1.33
HDAC4-211ENST00000494800 TJP1Q07157 1748 aa23.33■■□□□ 1.32
HDAC4-211ENST00000494800 NFE2L2Q16236 605 aa23.32■■□□□ 1.32
HDAC4-211ENST00000494800 NLGN1Q8N2Q7 840 aa23.32■■□□□ 1.32
HDAC4-211ENST00000494800 CYP19A1P11511 503 aaPredicted RBP23.31■■□□□ 1.32
HDAC4-211ENST00000494800 ZNF496Q96IT1 587 aaPredicted RBP23.31■■□□□ 1.32
HDAC4-211ENST00000494800 HEG1Q9ULI3 1381 aa23.3■■□□□ 1.32
HDAC4-211ENST00000494800 INTS5Q6P9B9 1019 aaKnown RBP23.3■■□□□ 1.32
HDAC4-211ENST00000494800 DCTN1Q14203 1278 aa23.29■■□□□ 1.32
HDAC4-211ENST00000494800 SIPA1L3O60292 1781 aaPredicted RBP23.29■■□□□ 1.32
HDAC4-211ENST00000494800 UBR2Q8IWV8 1755 aa23.29■■□□□ 1.32
HDAC4-211ENST00000494800 TAF7Q15545 349 aaPredicted RBP23.28■■□□□ 1.32
HDAC4-211ENST00000494800 CD2APQ9Y5K6 639 aa23.28■■□□□ 1.32
HDAC4-211ENST00000494800 PNISRQ8TF01 805 aaKnown RBP23.27■■□□□ 1.32
HDAC4-211ENST00000494800 ZPR1O75312 459 aa23.26■■□□□ 1.31
HDAC4-211ENST00000494800 MMP10P09238 476 aa23.26■■□□□ 1.31
HDAC4-211ENST00000494800 LMOD3Q0VAK6 560 aa23.26■■□□□ 1.31
HDAC4-211ENST00000494800 NPM2Q86SE8 214 aaKnown RBP23.26■■□□□ 1.31
HDAC4-211ENST00000494800 SOS1Q07889 1333 aaPredicted RBP23.26■■□□□ 1.31
HDAC4-211ENST00000494800 GYS1P13807 737 aa23.25■■□□□ 1.31
HDAC4-211ENST00000494800 ZBTB1Q9Y2K1 713 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms