RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 RGPD5Q99666 1765 aa16.91■□□□□ 0.3
UPF3A-210ENST00000493727 SLC34A2O95436 690 aa16.9■□□□□ 0.3
UPF3A-210ENST00000493727 MYOM1P52179 1685 aa16.9■□□□□ 0.3
UPF3A-210ENST00000493727 DOK7Q18PE1 504 aa16.89■□□□□ 0.29
UPF3A-210ENST00000493727 PPP1R1BQ9UD71 204 aaPredicted RBP16.89■□□□□ 0.29
UPF3A-210ENST00000493727 CPSF1Q10570 1443 aaKnown RBP16.88■□□□□ 0.29
UPF3A-210ENST00000493727 HSPA5P11021 654 aaKnown RBP16.88■□□□□ 0.29
UPF3A-210ENST00000493727 PTF1AQ7RTS3 328 aa16.88■□□□□ 0.29
UPF3A-210ENST00000493727 DDB1Q16531 1140 aa16.87■□□□□ 0.29
UPF3A-210ENST00000493727 WDR17Q8IZU2 1322 aa16.87■□□□□ 0.29
UPF3A-210ENST00000493727 TTC21AQ8NDW8 1320 aa16.87■□□□□ 0.29
UPF3A-210ENST00000493727 SBNO2Q9Y2G9 1366 aa16.87■□□□□ 0.29
UPF3A-210ENST00000493727 E2F4Q16254 413 aa16.86■□□□□ 0.29
UPF3A-210ENST00000493727 AXIN2Q9Y2T1 843 aa16.86■□□□□ 0.29
UPF3A-210ENST00000493727 MARCH10Q8NA82 808 aaPredicted RBP16.85■□□□□ 0.29
UPF3A-210ENST00000493727 KCNH5Q8NCM2 988 aa16.85■□□□□ 0.29
UPF3A-210ENST00000493727 PDGFDQ9GZP0 370 aaPredicted RBP16.85■□□□□ 0.29
UPF3A-210ENST00000493727 EMILIN3Q9NT22 766 aa16.85■□□□□ 0.29
UPF3A-210ENST00000493727 NFAT5O94916 1531 aa16.85■□□□□ 0.29
UPF3A-210ENST00000493727 ZBTB7CA1YPR0 619 aa16.84■□□□□ 0.29
UPF3A-210ENST00000493727 TOM1L2Q6ZVM7 507 aa16.84■□□□□ 0.29
UPF3A-210ENST00000493727 PTCD2Q8WV60 388 aaKnown RBP16.84■□□□□ 0.29
UPF3A-210ENST00000493727 TTC21BQ7Z4L5 1316 aa16.84■□□□□ 0.29
UPF3A-210ENST00000493727 ABCC6O95255 1503 aa16.84■□□□□ 0.29
UPF3A-210ENST00000493727 MON2Q7Z3U7 1717 aa16.84■□□□□ 0.29
UPF3A-210ENST00000493727 ST20-MTHFSA0A0A6YYL1 179 aa16.83■□□□□ 0.28
UPF3A-210ENST00000493727 PTGER2P43116 358 aa16.83■□□□□ 0.28
UPF3A-210ENST00000493727 NHSQ6T4R5 1651 aa16.83■□□□□ 0.28
UPF3A-210ENST00000493727 OXER1Q8TDS5 423 aa16.83■□□□□ 0.28
UPF3A-210ENST00000493727 CDCA7Q9BWT1 371 aaPredicted RBP16.83■□□□□ 0.28
UPF3A-210ENST00000493727 PAPPAQ13219 1627 aa16.82■□□□□ 0.28
UPF3A-210ENST00000493727 KTN1Q86UP2 1357 aaKnown RBP16.82■□□□□ 0.28
UPF3A-210ENST00000493727 ARHGEF25Q86VW2 580 aa16.82■□□□□ 0.28
UPF3A-210ENST00000493727 USP54Q70EL1 1684 aa16.81■□□□□ 0.28
UPF3A-210ENST00000493727 TNS2Q63HR2 1409 aa16.81■□□□□ 0.28
UPF3A-210ENST00000493727 GOLGB1Q14789 3259 aaKnown RBP16.81■□□□□ 0.28
UPF3A-210ENST00000493727 CHD4Q14839 1912 aa16.81■□□□□ 0.28
UPF3A-210ENST00000493727 CARD10Q9BWT7 1032 aa16.8■□□□□ 0.28
UPF3A-210ENST00000493727 ZSWIM6Q9HCJ5 1215 aa16.8■□□□□ 0.28
UPF3A-210ENST00000493727 ZNF316A6NFI3 1004 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-210ENST00000493727 ZBTB7AO95365 584 aa16.79■□□□□ 0.28
UPF3A-210ENST00000493727 RIMBP2O15034 1052 aa16.78■□□□□ 0.28
UPF3A-210ENST00000493727 TXNRD1Q16881 649 aa16.78■□□□□ 0.28
UPF3A-210ENST00000493727 GPR153Q6NV75 609 aa16.78■□□□□ 0.28
UPF3A-210ENST00000493727 ZNF710Q8N1W2 664 aa16.78■□□□□ 0.28
UPF3A-210ENST00000493727 CCDC7Q96M83 1385 aa16.77■□□□□ 0.28
UPF3A-210ENST00000493727 ST18O60284 1047 aa16.77■□□□□ 0.28
UPF3A-210ENST00000493727 LCE2DQ5TA82 110 aaPredicted RBP16.77■□□□□ 0.28
UPF3A-210ENST00000493727 PCDHGA4Q9Y5G9 962 aa16.77■□□□□ 0.28
UPF3A-210ENST00000493727 BTAF1O14981 1849 aa16.76■□□□□ 0.27
UPF3A-210ENST00000493727 CSB-PGBD3P0DP91 1061 aa16.76■□□□□ 0.27
UPF3A-210ENST00000493727 SLC15A2Q16348 729 aa16.76■□□□□ 0.27
UPF3A-210ENST00000493727 HDGFL2Q7Z4V5 671 aaPredicted RBP16.76■□□□□ 0.27
UPF3A-210ENST00000493727 KCNV2Q8TDN2 545 aa16.76■□□□□ 0.27
UPF3A-210ENST00000493727 FAM163AQ96GL9 167 aaPredicted RBP16.76■□□□□ 0.27
UPF3A-210ENST00000493727 PUS7Q96PZ0 661 aaKnown RBP16.76■□□□□ 0.27
UPF3A-210ENST00000493727 USP31Q70CQ4 1352 aa16.76■□□□□ 0.27
UPF3A-210ENST00000493727 LTN1O94822 1766 aa16.75■□□□□ 0.27
UPF3A-210ENST00000493727 TMF1P82094 1093 aa16.75■□□□□ 0.27
UPF3A-210ENST00000493727 STK32BQ9NY57 414 aa16.75■□□□□ 0.27
UPF3A-210ENST00000493727 ARIH1Q9Y4X5 557 aaPredicted RBP16.75■□□□□ 0.27
UPF3A-210ENST00000493727 ARSIQ5FYB1 569 aa16.74■□□□□ 0.27
UPF3A-210ENST00000493727 ZNF784Q8NCA9 323 aaPredicted RBP16.74■□□□□ 0.27
UPF3A-210ENST00000493727 POLR3GLQ9BT43 218 aa16.74■□□□□ 0.27
UPF3A-210ENST00000493727 TERF2IPQ9NYB0 399 aa16.74■□□□□ 0.27
UPF3A-210ENST00000493727 EDC4Q6P2E9 1401 aaKnown RBP16.73■□□□□ 0.27
UPF3A-210ENST00000493727 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.73■□□□□ 0.27
UPF3A-210ENST00000493727 TMC1Q8TDI8 760 aa16.73■□□□□ 0.27
UPF3A-210ENST00000493727 TESK2Q96S53 571 aa16.73■□□□□ 0.27
UPF3A-210ENST00000493727 SYT17Q9BSW7 474 aa16.73■□□□□ 0.27
UPF3A-210ENST00000493727 FHDC1Q9C0D6 1143 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-210ENST00000493727 MTFR1LQ9H019 292 aa16.73■□□□□ 0.27
UPF3A-210ENST00000493727 QSER1Q2KHR3 1735 aa16.73■□□□□ 0.27
UPF3A-210ENST00000493727 KAT6BQ8WYB5 2073 aa16.73■□□□□ 0.27
UPF3A-210ENST00000493727 EXOC5O00471 708 aa16.72■□□□□ 0.27
UPF3A-210ENST00000493727 HOXB1P14653 301 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-210ENST00000493727 KHSRPQ92945 711 aaKnown RBP eCLIP16.72■□□□□ 0.279e-6■□□□□ 8.8
UPF3A-210ENST00000493727 COL24A1Q17RW2 1714 aa16.72■□□□□ 0.27
UPF3A-210ENST00000493727 MAP3K5Q99683 1374 aa16.72■□□□□ 0.27
UPF3A-210ENST00000493727 CD163L1Q9NR16 1453 aa16.72■□□□□ 0.27
UPF3A-210ENST00000493727 ERBB3P21860 1342 aa16.71■□□□□ 0.27
UPF3A-210ENST00000493727 TBC1D12O60347 775 aa16.7■□□□□ 0.26
UPF3A-210ENST00000493727 CDCA8Q53HL2 280 aa16.7■□□□□ 0.26
UPF3A-210ENST00000493727 TUBGCP6Q96RT7 1819 aa16.69■□□□□ 0.26
UPF3A-210ENST00000493727 DPYSL4O14531 572 aa16.69■□□□□ 0.26
UPF3A-210ENST00000493727 NME9Q86XW9 330 aa16.69■□□□□ 0.26
UPF3A-210ENST00000493727 SLC12A5Q9H2X9 1139 aa16.69■□□□□ 0.26
UPF3A-210ENST00000493727 MAP3K9P80192 1104 aa16.68■□□□□ 0.26
UPF3A-210ENST00000493727 A0A1W2PP64 1363 aa16.67■□□□□ 0.26
UPF3A-210ENST00000493727 ARHGEF1Q92888 912 aaKnown RBP16.67■□□□□ 0.26
UPF3A-210ENST00000493727 ACSBG1Q96GR2 724 aa16.67■□□□□ 0.26
UPF3A-210ENST00000493727 KIF7Q2M1P5 1343 aa16.67■□□□□ 0.26
UPF3A-210ENST00000493727 FAM208AQ9UK61 1670 aaKnown RBP16.66■□□□□ 0.26
UPF3A-210ENST00000493727 ZNF827Q17R98 1081 aa16.66■□□□□ 0.26
UPF3A-210ENST00000493727 WASHC2AQ641Q2 1341 aa16.66■□□□□ 0.26
UPF3A-210ENST00000493727 IL2RBP14784 551 aa16.65■□□□□ 0.26
UPF3A-210ENST00000493727 ARXQ96QS3 562 aa16.65■□□□□ 0.26
UPF3A-210ENST00000493727 NLRP2Q9NX02 1062 aa16.65■□□□□ 0.26
UPF3A-210ENST00000493727 LRRC4BQ9NT99 713 aa16.64■□□□□ 0.25
UPF3A-210ENST00000493727 SHANK3Q9BYB0 1731 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms