RNA–Protein interactions for RNA: ENST00000493039.5

CSTF1-206, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 5

Gene CSTF1, Length 2,234 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-206ENST00000493039 WDR63Q8IWG1 891 aa12.27□□□□□ -0.45
CSTF1-206ENST00000493039 RTF1Q92541 710 aaKnown RBP12.27□□□□□ -0.45
CSTF1-206ENST00000493039 GTF3C3Q9Y5Q9 886 aa12.27□□□□□ -0.45
CSTF1-206ENST00000493039 ZNF853P0CG23 659 aa12.26□□□□□ -0.45
CSTF1-206ENST00000493039 LMOD3Q0VAK6 560 aa12.26□□□□□ -0.45
CSTF1-206ENST00000493039 HSP90AB1P08238 724 aaKnown RBP12.26□□□□□ -0.45
CSTF1-206ENST00000493039 PTF1AQ7RTS3 328 aa12.26□□□□□ -0.45
CSTF1-206ENST00000493039 NFATC2IPQ8NCF5 419 aa12.26□□□□□ -0.45
CSTF1-206ENST00000493039 MIS18AQ9NYP9 233 aa12.26□□□□□ -0.45
CSTF1-206ENST00000493039 KRT27Q7Z3Y8 459 aa12.25□□□□□ -0.45
CSTF1-206ENST00000493039 TRMT2AQ8IZ69 625 aaKnown RBP12.25□□□□□ -0.45
CSTF1-206ENST00000493039 KCNQ2O43526 872 aa12.25□□□□□ -0.45
CSTF1-206ENST00000493039 GOLGA2Q08379 1002 aa12.25□□□□□ -0.45
CSTF1-206ENST00000493039 SLFN5Q08AF3 891 aa12.25□□□□□ -0.45
CSTF1-206ENST00000493039 SLC52A2Q9HAB3 445 aa12.25□□□□□ -0.45
CSTF1-206ENST00000493039 ERVV-2B6SEH9 535 aa12.24□□□□□ -0.45
CSTF1-206ENST00000493039 CHL1O00533 1208 aa12.24□□□□□ -0.45
CSTF1-206ENST00000493039 IL16Q14005 1332 aa12.24□□□□□ -0.45
CSTF1-206ENST00000493039 PRIM1P49642 420 aaKnown RBP12.23□□□□□ -0.45
CSTF1-206ENST00000493039 TAF7Q15545 349 aaPredicted RBP12.23□□□□□ -0.45
CSTF1-206ENST00000493039 PIGBQ92521 554 aa12.23□□□□□ -0.45
CSTF1-206ENST00000493039 ACSBG1Q96GR2 724 aa12.23□□□□□ -0.45
CSTF1-206ENST00000493039 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
CSTF1-206ENST00000493039 BCL9O00512 1426 aa12.23□□□□□ -0.45
CSTF1-206ENST00000493039 TOGARAM1Q9Y4F4 1720 aa12.23□□□□□ -0.45
CSTF1-206ENST00000493039 BRWD3Q6RI45 1802 aa12.23□□□□□ -0.45
CSTF1-206ENST00000493039 KCNQ3O43525 872 aa12.23□□□□□ -0.45
CSTF1-206ENST00000493039 MRC1P22897 1456 aa12.22□□□□□ -0.45
CSTF1-206ENST00000493039 TEFQ10587 303 aa12.22□□□□□ -0.45
CSTF1-206ENST00000493039 DUSP27Q5VZP5 1158 aa12.22□□□□□ -0.45
CSTF1-206ENST00000493039 TSR2Q969E8 191 aaKnown RBP12.22□□□□□ -0.45
CSTF1-206ENST00000493039 MBIPQ9NS73 344 aa12.22□□□□□ -0.45
CSTF1-206ENST00000493039 IFT57Q9NWB7 429 aa12.22□□□□□ -0.45
CSTF1-206ENST00000493039 SCN11AQ9UI33 1791 aa12.22□□□□□ -0.45
CSTF1-206ENST00000493039 CABP4P57796 275 aa12.22□□□□□ -0.45
CSTF1-206ENST00000493039 LAS1LQ9Y4W2 734 aaKnown RBP12.22□□□□□ -0.45
CSTF1-206ENST00000493039 SLC39A6Q13433 755 aa12.21□□□□□ -0.45
CSTF1-206ENST00000493039 E9PSI1 815 aa12.21□□□□□ -0.46
CSTF1-206ENST00000493039 FANCIQ9NVI1 1328 aa12.2□□□□□ -0.46
CSTF1-206ENST00000493039 GNAI1P63096 354 aa12.2□□□□□ -0.46
CSTF1-206ENST00000493039 CALD1Q05682 793 aaKnown RBP12.2□□□□□ -0.46
CSTF1-206ENST00000493039 KRT24Q2M2I5 525 aa12.2□□□□□ -0.46
CSTF1-206ENST00000493039 ASAP1Q9ULH1 1129 aa12.2□□□□□ -0.46
CSTF1-206ENST00000493039 BTBD11A6QL63 1104 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 FAM196AQ6ZSG2 479 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 SYTL4Q96C24 671 aaPredicted RBP12.19□□□□□ -0.46
CSTF1-206ENST00000493039 TMOD3Q9NYL9 352 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 FBXO3Q9UK99 471 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 ZNF790Q6PG37 636 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 ATG3Q9NT62 314 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 BABAM1Q9NWV8 329 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 TSPYL4Q9UJ04 414 aa12.19□□□□□ -0.46
CSTF1-206ENST00000493039 SIPA1L3O60292 1781 aaPredicted RBP12.19□□□□□ -0.46
CSTF1-206ENST00000493039 TAF7LQ5H9L4 462 aa12.18□□□□□ -0.46
CSTF1-206ENST00000493039 VIRMAQ69YN4 1812 aaKnown RBP12.18□□□□□ -0.46
CSTF1-206ENST00000493039 TSPYL6Q8N831 410 aa12.18□□□□□ -0.46
CSTF1-206ENST00000493039 C8orf58Q8NAV2 365 aa12.18□□□□□ -0.46
CSTF1-206ENST00000493039 CHMP4AQ9BY43 222 aa12.18□□□□□ -0.46
CSTF1-206ENST00000493039 DOT1LQ8TEK3 1739 aa12.17□□□□□ -0.46
CSTF1-206ENST00000493039 EIF4A1P60842 406 aaKnown RBP12.17□□□□□ -0.46
CSTF1-206ENST00000493039 ZNF496Q96IT1 587 aaPredicted RBP12.17□□□□□ -0.46
CSTF1-206ENST00000493039 MYH16Q9H6N6 1097 aa12.17□□□□□ -0.46
CSTF1-206ENST00000493039 HEG1Q9ULI3 1381 aa12.17□□□□□ -0.46
CSTF1-206ENST00000493039 TRIM37O94972 964 aa12.17□□□□□ -0.46
CSTF1-206ENST00000493039 EXOSC9Q06265 439 aaKnown RBP12.17□□□□□ -0.46
CSTF1-206ENST00000493039 SLC4A9Q96Q91 983 aa12.17□□□□□ -0.46
CSTF1-206ENST00000493039 ITGB4P16144 1822 aa12.16□□□□□ -0.46
CSTF1-206ENST00000493039 BCL11BQ9C0K0 894 aaPredicted RBP12.16□□□□□ -0.46
CSTF1-206ENST00000493039 KAT6BQ8WYB5 2073 aa12.16□□□□□ -0.46
CSTF1-206ENST00000493039 PRAMEF22A3QJZ6 481 aa12.15□□□□□ -0.46
CSTF1-206ENST00000493039 ELL2O00472 640 aaPredicted RBP12.15□□□□□ -0.46
CSTF1-206ENST00000493039 SBF2Q86WG5 1849 aa12.15□□□□□ -0.47
CSTF1-206ENST00000493039 PTCD1O75127 700 aaKnown RBP12.14□□□□□ -0.47
CSTF1-206ENST00000493039 KDM3BQ7LBC6 1761 aa12.14□□□□□ -0.47
CSTF1-206ENST00000493039 VAMP4O75379 141 aa12.14□□□□□ -0.47
CSTF1-206ENST00000493039 GIGYF1O75420 1035 aaPredicted RBP12.14□□□□□ -0.47
CSTF1-206ENST00000493039 KCPQ6ZWJ8 1503 aa12.14□□□□□ -0.47
CSTF1-206ENST00000493039 NHSQ6T4R5 1651 aa12.13□□□□□ -0.47
CSTF1-206ENST00000493039 PAPPAQ13219 1627 aa12.13□□□□□ -0.47
CSTF1-206ENST00000493039 FGD1P98174 961 aa12.13□□□□□ -0.47
CSTF1-206ENST00000493039 TTC5Q8N0Z6 440 aa12.12□□□□□ -0.47
CSTF1-206ENST00000493039 PALLDQ8WX93 1383 aa12.12□□□□□ -0.47
CSTF1-206ENST00000493039 KCNQ4P56696 695 aa12.11□□□□□ -0.47
CSTF1-206ENST00000493039 TWISTNBQ3B726 338 aaPredicted RBP12.11□□□□□ -0.47
CSTF1-206ENST00000493039 ILDR2Q71H61 639 aa12.11□□□□□ -0.47
CSTF1-206ENST00000493039 PROM2Q8N271 834 aa12.11□□□□□ -0.47
CSTF1-206ENST00000493039 FMNL2Q96PY5 1086 aa12.11□□□□□ -0.47
CSTF1-206ENST00000493039 USP16Q9Y5T5 823 aa12.11□□□□□ -0.47
CSTF1-206ENST00000493039 LOC102724428A0A0B4J2F2 783 aa12.1□□□□□ -0.47
CSTF1-206ENST00000493039 SIK1P57059 783 aa12.1□□□□□ -0.47
CSTF1-206ENST00000493039 RBM42Q9BTD8 480 aaKnown RBP12.1□□□□□ -0.47
CSTF1-206ENST00000493039 BTAF1O14981 1849 aa12.1□□□□□ -0.47
CSTF1-206ENST00000493039 UBR2Q8IWV8 1755 aa12.1□□□□□ -0.47
CSTF1-206ENST00000493039 SNRPA1P09661 255 aaKnown RBP12.1□□□□□ -0.47
CSTF1-206ENST00000493039 ITPK1Q13572 414 aa12.1□□□□□ -0.47
CSTF1-206ENST00000493039 SMARCC1Q92922 1105 aaPredicted RBP12.1□□□□□ -0.47
CSTF1-206ENST00000493039 DNAJC10Q8IXB1 793 aa12.09□□□□□ -0.47
CSTF1-206ENST00000493039 VSIG10Q8N0Z9 540 aa12.09□□□□□ -0.47
CSTF1-206ENST00000493039 LRRC4BQ9NT99 713 aa12.09□□□□□ -0.47
CSTF1-206ENST00000493039 TCERG1O14776 1098 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms