RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 CCDC88AQ3V6T2 1871 aa16.6■□□□□ 0.25
HDAC6-233ENST00000489352 RGS19P49795 217 aa16.59■□□□□ 0.25
HDAC6-233ENST00000489352 TRAPPC3LQ5T215 181 aa16.58■□□□□ 0.24
HDAC6-233ENST00000489352 MEGF6O75095 1541 aa16.58■□□□□ 0.24
HDAC6-233ENST00000489352 C4AP0C0L4 1744 aa16.58■□□□□ 0.24
HDAC6-233ENST00000489352 PCDH11XQ9BZA7 1347 aa16.57■□□□□ 0.24
HDAC6-233ENST00000489352 PCDH11YQ9BZA8 1340 aa16.57■□□□□ 0.24
HDAC6-233ENST00000489352 TATP17735 454 aaPredicted RBP16.57■□□□□ 0.24
HDAC6-233ENST00000489352 KCNA3P22001 575 aa16.57■□□□□ 0.24
HDAC6-233ENST00000489352 AMPHP49418 695 aa16.57■□□□□ 0.24
HDAC6-233ENST00000489352 DPY19L2Q6NUT2 758 aa16.57■□□□□ 0.24
HDAC6-233ENST00000489352 LINC00116Q8NCU8 138 aa16.57■□□□□ 0.24
HDAC6-233ENST00000489352 CNTNAP1P78357 1384 aa16.56■□□□□ 0.24
HDAC6-233ENST00000489352 LOC102724428A0A0B4J2F2 783 aa16.56■□□□□ 0.24
HDAC6-233ENST00000489352 SIK1P57059 783 aa16.56■□□□□ 0.24
HDAC6-233ENST00000489352 RTCBQ9Y3I0 505 aaKnown RBP16.56■□□□□ 0.24
HDAC6-233ENST00000489352 PDE4DIPQ5VU43 2346 aa16.55■□□□□ 0.24
HDAC6-233ENST00000489352 LMNB1P20700 586 aa16.55■□□□□ 0.24
HDAC6-233ENST00000489352 ATP6V1AP38606 617 aa16.55■□□□□ 0.24
HDAC6-233ENST00000489352 CHADLQ6NUI6 762 aa16.54■□□□□ 0.24
HDAC6-233ENST00000489352 WBP1LQ9NX94 342 aa16.54■□□□□ 0.24
HDAC6-233ENST00000489352 RFC4P35249 363 aa16.53■□□□□ 0.24
HDAC6-233ENST00000489352 HDGFL2Q7Z4V5 671 aaPredicted RBP16.53■□□□□ 0.24
HDAC6-233ENST00000489352 TIAM2Q8IVF5 1701 aa16.53■□□□□ 0.24
HDAC6-233ENST00000489352 VIRMAQ69YN4 1812 aaKnown RBP16.52■□□□□ 0.24
HDAC6-233ENST00000489352 VEGFBP49765 207 aa16.52■□□□□ 0.24
HDAC6-233ENST00000489352 RASSF7Q02833 373 aa16.52■□□□□ 0.24
HDAC6-233ENST00000489352 PIGBQ92521 554 aa16.52■□□□□ 0.24
HDAC6-233ENST00000489352 MAP2P11137 1827 aaKnown RBP16.52■□□□□ 0.23
HDAC6-233ENST00000489352 HOXC9P31274 260 aa16.51■□□□□ 0.23
HDAC6-233ENST00000489352 USHBP1Q8N6Y0 703 aa16.51■□□□□ 0.23
HDAC6-233ENST00000489352 TMC1Q8TDI8 760 aa16.51■□□□□ 0.23
HDAC6-233ENST00000489352 TNRC18O15417 2968 aaPredicted RBP16.51■□□□□ 0.23
HDAC6-233ENST00000489352 HSPA8P11142 646 aaKnown RBP16.5■□□□□ 0.23
HDAC6-233ENST00000489352 MAP2K1Q02750 393 aaPredicted RBP16.5■□□□□ 0.23
HDAC6-233ENST00000489352 CHRNA5P30532 468 aa16.49■□□□□ 0.23
HDAC6-233ENST00000489352 NBPF6Q5VWK0 638 aa16.49■□□□□ 0.23
HDAC6-233ENST00000489352 NBPF4Q96M43 638 aa16.49■□□□□ 0.23
HDAC6-233ENST00000489352 BEGAINQ9BUH8 593 aa16.49■□□□□ 0.23
HDAC6-233ENST00000489352 SMG6Q86US8 1419 aaKnown RBP16.48■□□□□ 0.23
HDAC6-233ENST00000489352 GYS1P13807 737 aa16.48■□□□□ 0.23
HDAC6-233ENST00000489352 ADRA2BP18089 450 aa16.48■□□□□ 0.23
HDAC6-233ENST00000489352 ITPK1Q13572 414 aa16.48■□□□□ 0.23
HDAC6-233ENST00000489352 ARHGEF1Q92888 912 aaKnown RBP16.48■□□□□ 0.23
HDAC6-233ENST00000489352 TMOD3Q9NYL9 352 aa16.48■□□□□ 0.23
HDAC6-233ENST00000489352 SBNO2Q9Y2G9 1366 aa16.48■□□□□ 0.23
HDAC6-233ENST00000489352 TMEM88BA6NKF7 163 aa16.47■□□□□ 0.23
HDAC6-233ENST00000489352 CD163L1Q9NR16 1453 aa16.47■□□□□ 0.23
HDAC6-233ENST00000489352 MAP3K19Q56UN5 1328 aa16.46■□□□□ 0.23
HDAC6-233ENST00000489352 POTECB2RU33 542 aa16.46■□□□□ 0.23
HDAC6-233ENST00000489352 KDM6AO15550 1401 aaPredicted RBP16.45■□□□□ 0.22
HDAC6-233ENST00000489352 EDC4Q6P2E9 1401 aaKnown RBP16.45■□□□□ 0.22
HDAC6-233ENST00000489352 CYP27B1O15528 508 aa16.45■□□□□ 0.22
HDAC6-233ENST00000489352 COG3Q96JB2 828 aa16.45■□□□□ 0.22
HDAC6-233ENST00000489352 TERF2IPQ9NYB0 399 aa16.45■□□□□ 0.22
HDAC6-233ENST00000489352 DEFB115Q30KQ5 88 aa16.44■□□□□ 0.22
HDAC6-233ENST00000489352 ASAP1Q9ULH1 1129 aa16.44■□□□□ 0.22
HDAC6-233ENST00000489352 RAB3GAP2Q9H2M9 1393 aa16.43■□□□□ 0.22
HDAC6-233ENST00000489352 DICER1Q9UPY3 1922 aaKnown RBP16.42■□□□□ 0.22
HDAC6-233ENST00000489352 ERFEQ4G0M1 354 aa16.41■□□□□ 0.22
HDAC6-233ENST00000489352 RC3H1Q5TC82 1133 aaKnown RBP16.41■□□□□ 0.22
HDAC6-233ENST00000489352 RBM42Q9BTD8 480 aaKnown RBP16.41■□□□□ 0.22
HDAC6-233ENST00000489352 RPS6KA4O75676 772 aa16.4■□□□□ 0.22
HDAC6-233ENST00000489352 POTEIP0CG38 1075 aa16.4■□□□□ 0.22
HDAC6-233ENST00000489352 POTEJP0CG39 1038 aa16.4■□□□□ 0.22
HDAC6-233ENST00000489352 TTLL6Q8N841 843 aa16.4■□□□□ 0.22
HDAC6-233ENST00000489352 SPG7Q9UQ90 795 aa16.4■□□□□ 0.22
HDAC6-233ENST00000489352 PASKQ96RG2 1323 aa16.4■□□□□ 0.22
HDAC6-233ENST00000489352 WDR33Q9C0J8 1336 aaKnown RBP16.4■□□□□ 0.22
HDAC6-233ENST00000489352 IQCA1LA6NCM1 817 aa16.39■□□□□ 0.21
HDAC6-233ENST00000489352 FBLN1P23142 703 aa16.39■□□□□ 0.21
HDAC6-233ENST00000489352 LDHDQ86WU2 507 aa16.39■□□□□ 0.21
HDAC6-233ENST00000489352 SLC12A5Q9H2X9 1139 aa16.39■□□□□ 0.21
HDAC6-233ENST00000489352 RTL1A6NKG5 1358 aa16.38■□□□□ 0.21
HDAC6-233ENST00000489352 ABT1Q9ULW3 272 aaKnown RBP16.38■□□□□ 0.21
HDAC6-233ENST00000489352 CLEC11AQ9Y240 323 aa16.38■□□□□ 0.21
HDAC6-233ENST00000489352 NKX1-1Q15270 411 aaPredicted RBP16.37■□□□□ 0.21
HDAC6-233ENST00000489352 PAXIP1Q6ZW49 1069 aaPredicted RBP16.37■□□□□ 0.21
HDAC6-233ENST00000489352 ATG3Q9NT62 314 aa16.37■□□□□ 0.21
HDAC6-233ENST00000489352 RASSF10A6NK89 507 aa16.36■□□□□ 0.21
HDAC6-233ENST00000489352 DDR1Q08345 913 aa16.36■□□□□ 0.21
HDAC6-233ENST00000489352 FKBP8Q14318 412 aa16.36■□□□□ 0.21
HDAC6-233ENST00000489352 RRS1Q15050 365 aaKnown RBP16.36■□□□□ 0.21
HDAC6-233ENST00000489352 SCN4AP35499 1836 aa16.35■□□□□ 0.21
HDAC6-233ENST00000489352 DDNO94850 711 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-233ENST00000489352 EAPPQ56P03 285 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-233ENST00000489352 MCOLN1Q9GZU1 580 aa16.35■□□□□ 0.21
HDAC6-233ENST00000489352 COL5A3P25940 1745 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-233ENST00000489352 CNTNAP4Q9C0A0 1308 aa16.35■□□□□ 0.21
HDAC6-233ENST00000489352 DLEC1Q9Y238 1755 aa16.34■□□□□ 0.21
HDAC6-233ENST00000489352 NFKBIEO00221 500 aa16.34■□□□□ 0.21
HDAC6-233ENST00000489352 GRM1Q13255 1194 aa16.34■□□□□ 0.21
HDAC6-233ENST00000489352 PRPF38BQ5VTL8 546 aaKnown RBP16.34■□□□□ 0.21
HDAC6-233ENST00000489352 SRP68Q9UHB9 627 aaKnown RBP16.34■□□□□ 0.21
HDAC6-233ENST00000489352 CASP8AP2Q9UKL3 1982 aa16.34■□□□□ 0.21
HDAC6-233ENST00000489352 A0A1W2PP64 1363 aa16.34■□□□□ 0.21
HDAC6-233ENST00000489352 ZNF831Q5JPB2 1677 aa16.34■□□□□ 0.21
HDAC6-233ENST00000489352 MYH14Q7Z406 1995 aaKnown RBP16.33■□□□□ 0.21
HDAC6-233ENST00000489352 H0YIN7 160 aa16.33■□□□□ 0.2
HDAC6-233ENST00000489352 POLRMTO00411 1230 aaKnown RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms