RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 ATG3Q9NT62 314 aa12.19□□□□□ -0.46
HDAC6-232ENST00000489053 PAPPAQ13219 1627 aa12.19□□□□□ -0.46
HDAC6-232ENST00000489053 ZEB1P37275 1124 aaPredicted RBP12.18□□□□□ -0.46
HDAC6-232ENST00000489053 MSL1Q68DK7 614 aa12.18□□□□□ -0.46
HDAC6-232ENST00000489053 COL23A1Q86Y22 540 aaPredicted RBP12.18□□□□□ -0.46
HDAC6-232ENST00000489053 FHDC1Q9C0D6 1143 aaPredicted RBP12.18□□□□□ -0.46
HDAC6-232ENST00000489053 CASZ1Q86V15 1759 aa12.18□□□□□ -0.46
HDAC6-232ENST00000489053 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.17□□□□□ -0.46
HDAC6-232ENST00000489053 SSFA2P28290 1259 aa12.17□□□□□ -0.46
HDAC6-232ENST00000489053 TEFQ10587 303 aa12.17□□□□□ -0.46
HDAC6-232ENST00000489053 MTHFSDQ2M296 383 aaKnown RBP12.17□□□□□ -0.46
HDAC6-232ENST00000489053 TTC5Q8N0Z6 440 aa12.17□□□□□ -0.46
HDAC6-232ENST00000489053 LINC00116Q8NCU8 138 aa12.17□□□□□ -0.46
HDAC6-232ENST00000489053 RTCBQ9Y3I0 505 aaKnown RBP12.17□□□□□ -0.46
HDAC6-232ENST00000489053 GNAT3A8MTJ3 354 aa12.16□□□□□ -0.46
HDAC6-232ENST00000489053 PRKAR2BP31323 418 aa12.16□□□□□ -0.46
HDAC6-232ENST00000489053 PELP1Q8IZL8 1130 aaKnown RBP12.16□□□□□ -0.46
HDAC6-232ENST00000489053 RTF1Q92541 710 aaKnown RBP12.16□□□□□ -0.46
HDAC6-232ENST00000489053 SLC52A2Q9HAB3 445 aa12.16□□□□□ -0.46
HDAC6-232ENST00000489053 KDM6AO15550 1401 aaPredicted RBP12.16□□□□□ -0.46
HDAC6-232ENST00000489053 TOGARAM1Q9Y4F4 1720 aa12.16□□□□□ -0.46
HDAC6-232ENST00000489053 LY75O60449 1722 aa12.15□□□□□ -0.46
HDAC6-232ENST00000489053 RNMTO43148 476 aaKnown RBP12.15□□□□□ -0.46
HDAC6-232ENST00000489053 ITPK1Q13572 414 aa12.15□□□□□ -0.46
HDAC6-232ENST00000489053 TRAPPC3LQ5T215 181 aa12.15□□□□□ -0.46
HDAC6-232ENST00000489053 SYT17Q9BSW7 474 aa12.15□□□□□ -0.46
HDAC6-232ENST00000489053 DDX10Q13206 875 aaKnown RBP12.14□□□□□ -0.47
HDAC6-232ENST00000489053 GPR162Q16538 588 aa12.14□□□□□ -0.47
HDAC6-232ENST00000489053 PNNQ9H307 717 aaKnown RBP12.14□□□□□ -0.47
HDAC6-232ENST00000489053 LGR6Q9HBX8 967 aa12.14□□□□□ -0.47
HDAC6-232ENST00000489053 MAP3K5Q99683 1374 aa12.14□□□□□ -0.47
HDAC6-232ENST00000489053 C5P01031 1676 aa12.13□□□□□ -0.47
HDAC6-232ENST00000489053 RFC4P35249 363 aa12.13□□□□□ -0.47
HDAC6-232ENST00000489053 RALBP1Q15311 655 aa12.13□□□□□ -0.47
HDAC6-232ENST00000489053 NPM2Q86SE8 214 aaKnown RBP12.13□□□□□ -0.47
HDAC6-232ENST00000489053 ITGB4P16144 1822 aa12.13□□□□□ -0.47
HDAC6-232ENST00000489053 COL3A1P02461 1466 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-232ENST00000489053 C4BP0C0L5 1744 aa12.12□□□□□ -0.47
HDAC6-232ENST00000489053 FCHSD2O94868 740 aa12.12□□□□□ -0.47
HDAC6-232ENST00000489053 ADRA2BP18089 450 aa12.12□□□□□ -0.47
HDAC6-232ENST00000489053 RC3H1Q5TC82 1133 aaKnown RBP12.12□□□□□ -0.47
HDAC6-232ENST00000489053 SGIP1Q9BQI5 828 aa12.12□□□□□ -0.47
HDAC6-232ENST00000489053 CNTNAP4Q9C0A0 1308 aa12.11□□□□□ -0.47
HDAC6-232ENST00000489053 MAPK8IP3Q9UPT6 1336 aa12.11□□□□□ -0.47
HDAC6-232ENST00000489053 YY1P25490 414 aa12.11□□□□□ -0.47
HDAC6-232ENST00000489053 RSPH6AQ9H0K4 717 aa12.11□□□□□ -0.47
HDAC6-232ENST00000489053 STARD3NLO95772 234 aa12.1□□□□□ -0.47
HDAC6-232ENST00000489053 CRKLP46109 303 aaKnown RBP12.1□□□□□ -0.47
HDAC6-232ENST00000489053 SLC39A6Q13433 755 aa12.1□□□□□ -0.47
HDAC6-232ENST00000489053 QSER1Q2KHR3 1735 aa12.09□□□□□ -0.47
HDAC6-232ENST00000489053 ZPR1O75312 459 aa12.09□□□□□ -0.47
HDAC6-232ENST00000489053 RPS6KA4O75676 772 aa12.09□□□□□ -0.47
HDAC6-232ENST00000489053 SMIM5Q71RC9 77 aa12.09□□□□□ -0.47
HDAC6-232ENST00000489053 NLGN1Q8N2Q7 840 aa12.09□□□□□ -0.47
HDAC6-232ENST00000489053 SLC4A9Q96Q91 983 aa12.09□□□□□ -0.47
HDAC6-232ENST00000489053 CCDC87Q9NVE4 849 aa12.09□□□□□ -0.47
HDAC6-232ENST00000489053 BTBD11A6QL63 1104 aa12.08□□□□□ -0.48
HDAC6-232ENST00000489053 MMP10P09238 476 aa12.08□□□□□ -0.48
HDAC6-232ENST00000489053 DNAJC10Q8IXB1 793 aa12.08□□□□□ -0.48
HDAC6-232ENST00000489053 PHACTR3Q96KR7 559 aa12.08□□□□□ -0.48
HDAC6-232ENST00000489053 CD2APQ9Y5K6 639 aa12.08□□□□□ -0.48
HDAC6-232ENST00000489053 WDR43Q15061 677 aaKnown RBP eCLIP12.07□□□□□ -0.48
HDAC6-232ENST00000489053 AMIGO3Q86WK7 504 aa12.07□□□□□ -0.48
HDAC6-232ENST00000489053 VSIG10Q8N0Z9 540 aa12.07□□□□□ -0.48
HDAC6-232ENST00000489053 ARHGEF1Q92888 912 aaKnown RBP12.07□□□□□ -0.48
HDAC6-232ENST00000489053 FMNL2Q96PY5 1086 aa12.07□□□□□ -0.48
HDAC6-232ENST00000489053 TEX13AQ9BXU3 409 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-232ENST00000489053 ZNF330Q9Y3S2 320 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-232ENST00000489053 PARP3Q9Y6F1 533 aa12.07□□□□□ -0.48
HDAC6-232ENST00000489053 ZNF790Q6PG37 636 aa12.06□□□□□ -0.48
HDAC6-232ENST00000489053 IL17REQ8NFR9 667 aa12.06□□□□□ -0.48
HDAC6-232ENST00000489053 NLGN2Q8NFZ4 835 aa12.06□□□□□ -0.48
HDAC6-232ENST00000489053 MRC1P22897 1456 aa12.06□□□□□ -0.48
HDAC6-232ENST00000489053 MYBBP1AQ9BQG0 1328 aaKnown RBP12.06□□□□□ -0.48
HDAC6-232ENST00000489053 A0A087WZG4 1122 aa12.05□□□□□ -0.48
HDAC6-232ENST00000489053 HTATSF1O43719 755 aaKnown RBP12.05□□□□□ -0.48
HDAC6-232ENST00000489053 GRIN3BO60391 1043 aa12.05□□□□□ -0.48
HDAC6-232ENST00000489053 CANXP27824 592 aaKnown RBP12.05□□□□□ -0.48
HDAC6-232ENST00000489053 MCM10Q7L590 875 aa12.05□□□□□ -0.48
HDAC6-232ENST00000489053 TAF1LQ8IZX4 1826 aa12.04□□□□□ -0.48
HDAC6-232ENST00000489053 TUBGCP6Q96RT7 1819 aa12.04□□□□□ -0.48
HDAC6-232ENST00000489053 SCN11AQ9UI33 1791 aa12.03□□□□□ -0.48
HDAC6-232ENST00000489053 CYP19A1P11511 503 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-232ENST00000489053 GYS1P13807 737 aa12.03□□□□□ -0.48
HDAC6-232ENST00000489053 NFE2L2Q16236 605 aa12.03□□□□□ -0.48
HDAC6-232ENST00000489053 INTS5Q6P9B9 1019 aaKnown RBP12.03□□□□□ -0.48
HDAC6-232ENST00000489053 PNISRQ8TF01 805 aaKnown RBP12.03□□□□□ -0.48
HDAC6-232ENST00000489053 ZNF496Q96IT1 587 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-232ENST00000489053 USP42Q9H9J4 1324 aaKnown RBP12.03□□□□□ -0.48
HDAC6-232ENST00000489053 HEG1Q9ULI3 1381 aa12.03□□□□□ -0.48
HDAC6-232ENST00000489053 GOLGB1Q14789 3259 aaKnown RBP12.03□□□□□ -0.48
HDAC6-232ENST00000489053 NPHP1O15259 732 aa12.02□□□□□ -0.49
HDAC6-232ENST00000489053 LMOD3Q0VAK6 560 aa12.02□□□□□ -0.49
HDAC6-232ENST00000489053 DCTN1Q14203 1278 aa12.02□□□□□ -0.49
HDAC6-232ENST00000489053 TAF7Q15545 349 aaPredicted RBP12.02□□□□□ -0.49
HDAC6-232ENST00000489053 SRP68Q9UHB9 627 aaKnown RBP12.02□□□□□ -0.49
HDAC6-232ENST00000489053 ZBTB1Q9Y2K1 713 aa12.02□□□□□ -0.49
HDAC6-232ENST00000489053 COL15A1P39059 1388 aa12.02□□□□□ -0.49
HDAC6-232ENST00000489053 CEMIPQ8WUJ3 1361 aa12.02□□□□□ -0.49
HDAC6-232ENST00000489053 UBR3Q6ZT12 1888 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms