RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	MCC	P23508	829 aa		11.92	□□□□□ -0.5
ZNF3-215	ENST00000487620	LRRCC1	Q9C099	1032 aa		11.92	□□□□□ -0.5
ZNF3-215	ENST00000487620	TTC21B	Q7Z4L5	1316 aa		11.92	□□□□□ -0.5
ZNF3-215	ENST00000487620	MX1	P20591	662 aa		11.91	□□□□□ -0.5
ZNF3-215	ENST00000487620	CRB1	P82279	1406 aa		11.91	□□□□□ -0.5
ZNF3-215	ENST00000487620	NECTIN2	Q92692	538 aa		11.91	□□□□□ -0.5
ZNF3-215	ENST00000487620	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.91	□□□□□ -0.5
ZNF3-215	ENST00000487620	RIMS1	Q86UR5	1692 aa	Known RBP	11.91	□□□□□ -0.5
ZNF3-215	ENST00000487620	MBD3	O95983	291 aa		11.91	□□□□□ -0.5
ZNF3-215	ENST00000487620	RBM10	P98175	930 aa	Known RBP	11.91	□□□□□ -0.5
ZNF3-215	ENST00000487620	ACE	P12821	1306 aa		11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	MTHFSD	Q2M296	383 aa	Known RBP	11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	STK31	Q9BXU1	1019 aa		11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	UPF3B	Q9BZI7	483 aa	Known RBP	11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	PEAK1	Q9H792	1746 aa		11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	PNMA6E	A0A0J9YXQ4	647 aa		11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	BRD1	O95696	1058 aa		11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	MCM2	P49736	904 aa		11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	FKBP5	Q13451	457 aa	Predicted RBP	11.9	□□□□□ -0.5
ZNF3-215	ENST00000487620	SPATA31D1	Q6ZQQ2	1576 aa		11.9	□□□□□ -0.51
ZNF3-215	ENST00000487620	MAP3K19	Q56UN5	1328 aa		11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	ZNF500	O60304	480 aa	Predicted RBP	11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	ZKSCAN5	Q9Y2L8	839 aa		11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	TCHH	Q07283	1943 aa		11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	TSPOAP1	O95153	1857 aa		11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	CHML	P26374	656 aa		11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	PDCL3	Q9H2J4	239 aa		11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	GDPD2	Q9HCC8	539 aa		11.89	□□□□□ -0.51
ZNF3-215	ENST00000487620	TUBGCP6	Q96RT7	1819 aa		11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	TRH	P20396	242 aa	Predicted RBP	11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	SALL3	Q9BXA9	1300 aa		11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	CUL4A	Q13619	759 aa		11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	TPRN	Q4KMQ1	711 aa		11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	ZMYND15	Q9H091	742 aa		11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	FAM13B	Q9NYF5	915 aa		11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	CCDC39	Q9UFE4	941 aa		11.88	□□□□□ -0.51
ZNF3-215	ENST00000487620	PTMA	P06454	111 aa	Known RBP	11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	FLII	Q13045	1269 aa		11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	UNC5CL	Q8IV45	518 aa		11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	TSPY26P	Q9H489	355 aa		11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	OVOS2	A0A0J9YW53	1432 aa		11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	OVOS2	Q6IE36	1432 aa		11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	RGPD1	P0DJD0	1748 aa		11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	GNAI3	P08754	354 aa		11.87	□□□□□ -0.51
ZNF3-215	ENST00000487620	ANAPC15	P60006	121 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	INTS4	Q96HW7	963 aa	Known RBP	11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	IL1RAPL2	Q9NP60	686 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	PPP6R1	Q9UPN7	881 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	LRRFIP2	Q9Y608	721 aa	Known RBP	11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	ROBO2	Q9HCK4	1378 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	UQCRHL	A0A096LP55	91 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	ZBTB7C	A1YPR0	619 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	GADD45B	O75293	160 aa	Predicted RBP	11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	MAP4K4	O95819	1239 aa	Predicted RBP	11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	UQCRH	P07919	91 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	TERF1	P54274	439 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	ATP8B2	P98198	1209 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	FAM69C	Q0P6D2	419 aa		11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	SYAP1	Q96A49	352 aa	Predicted RBP	11.86	□□□□□ -0.51
ZNF3-215	ENST00000487620	ESF1	Q9H501	851 aa	Known RBP	11.85	□□□□□ -0.51
ZNF3-215	ENST00000487620	TECPR2	O15040	1411 aa		11.85	□□□□□ -0.51
ZNF3-215	ENST00000487620	CCDC30	Q5VVM6	783 aa		11.85	□□□□□ -0.51
ZNF3-215	ENST00000487620	SIRT1	Q96EB6	747 aa		11.85	□□□□□ -0.51
ZNF3-215	ENST00000487620	IL25	Q9H293	177 aa		11.85	□□□□□ -0.51
ZNF3-215	ENST00000487620	FMN2	Q9NZ56	1722 aa		11.85	□□□□□ -0.51
ZNF3-215	ENST00000487620	USP6	P35125	1406 aa		11.85	□□□□□ -0.51
ZNF3-215	ENST00000487620	ARHGEF10	O15013	1369 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	HDGF	P51858	240 aa	Known RBP	11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	CSPP1	Q1MSJ5	1256 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	USP48	Q86UV5	1035 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	NUTM1	Q86Y26	1132 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	NALCN	Q8IZF0	1738 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	MCM5	P33992	734 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	AMPH	P49418	695 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	MPND	Q8N594	471 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	PKNOX2	Q96KN3	472 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	SRCIN1	Q9C0H9	1055 aa		11.84	□□□□□ -0.51
ZNF3-215	ENST00000487620	SSH2	Q76I76	1423 aa		11.83	□□□□□ -0.51
ZNF3-215	ENST00000487620	WDR33	Q9C0J8	1336 aa	Known RBP	11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	PHF14	O94880	888 aa		11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	XRN1	Q8IZH2	1706 aa	Known RBP	11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	EYA1	Q99502	592 aa		11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	STAP2	Q9UGK3	403 aa		11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	FAM208A	Q9UK61	1670 aa	Known RBP	11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	AGL	P35573	1532 aa		11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	UBTFL1	P0CB47	393 aa	Predicted RBP	11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	LARP6	Q9BRS8	491 aa	Known RBP	11.83	□□□□□ -0.52
ZNF3-215	ENST00000487620	PLEKHG3	A1L390	1219 aa		11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	FLT4	P35916	1363 aa		11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	USP31	Q70CQ4	1352 aa		11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	TOPAZ1	Q8N9V7	1692 aa		11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	ARID3A	Q99856	593 aa		11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	USP44	Q9H0E7	712 aa		11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	11.82	□□□□□ -0.52
ZNF3-215	ENST00000487620	SURF6	O75683	361 aa	Known RBP	11.81	□□□□□ -0.52
ZNF3-215	ENST00000487620	HSPA4	P34932	840 aa		11.81	□□□□□ -0.52
ZNF3-215	ENST00000487620	CACNA1F	O60840	1977 aa		11.81	□□□□□ -0.52
ZNF3-215	ENST00000487620	GNAT3	A8MTJ3	354 aa		11.81	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 159.3 ms