RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 GPR162Q16538 588 aa12.85□□□□□ -0.35
TMEM39A-208ENST00000486159 ASAP1Q9ULH1 1129 aa12.85□□□□□ -0.35
TMEM39A-208ENST00000486159 MAP3K5Q99683 1374 aa12.84□□□□□ -0.35
TMEM39A-208ENST00000486159 POLD1P28340 1107 aa12.84□□□□□ -0.35
TMEM39A-208ENST00000486159 DSG3P32926 999 aa12.84□□□□□ -0.35
TMEM39A-208ENST00000486159 EIF4G2P78344 907 aaKnown RBP eCLIP12.84□□□□□ -0.35
TMEM39A-208ENST00000486159 NKX1-1Q15270 411 aaPredicted RBP12.84□□□□□ -0.35
TMEM39A-208ENST00000486159 LINC00116Q8NCU8 138 aa12.84□□□□□ -0.35
TMEM39A-208ENST00000486159 PHF14O94880 888 aa12.83□□□□□ -0.36
TMEM39A-208ENST00000486159 PHKG2P15735 406 aa12.83□□□□□ -0.36
TMEM39A-208ENST00000486159 YBX3P16989 372 aaKnown RBP eCLIP12.83□□□□□ -0.36
TMEM39A-208ENST00000486159 ITPK1Q13572 414 aa12.83□□□□□ -0.36
TMEM39A-208ENST00000486159 C4BP0C0L5 1744 aa12.82□□□□□ -0.36
TMEM39A-208ENST00000486159 CHD4Q14839 1912 aa12.82□□□□□ -0.36
TMEM39A-208ENST00000486159 GOLGB1Q14789 3259 aaKnown RBP12.82□□□□□ -0.36
TMEM39A-208ENST00000486159 POLA2Q14181 598 aa12.82□□□□□ -0.36
TMEM39A-208ENST00000486159 AEBP1Q8IUX7 1158 aa12.82□□□□□ -0.36
TMEM39A-208ENST00000486159 WWC3Q9ULE0 1092 aa12.82□□□□□ -0.36
TMEM39A-208ENST00000486159 SPG7Q9UQ90 795 aa12.82□□□□□ -0.36
TMEM39A-208ENST00000486159 SLC4A9Q96Q91 983 aa12.81□□□□□ -0.36
TMEM39A-208ENST00000486159 ATG3Q9NT62 314 aa12.81□□□□□ -0.36
TMEM39A-208ENST00000486159 UBR3Q6ZT12 1888 aa12.8□□□□□ -0.36
TMEM39A-208ENST00000486159 LOC102724428A0A0B4J2F2 783 aa12.8□□□□□ -0.36
TMEM39A-208ENST00000486159 GIGYF1O75420 1035 aaPredicted RBP12.8□□□□□ -0.36
TMEM39A-208ENST00000486159 SIK1P57059 783 aa12.8□□□□□ -0.36
TMEM39A-208ENST00000486159 IFNL2Q8IZJ0 200 aa12.8□□□□□ -0.36
TMEM39A-208ENST00000486159 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.79□□□□□ -0.36
TMEM39A-208ENST00000486159 AK7Q96M32 723 aa12.79□□□□□ -0.36
TMEM39A-208ENST00000486159 TMOD3Q9NYL9 352 aa12.79□□□□□ -0.36
TMEM39A-208ENST00000486159 IGSF1Q8N6C5 1336 aa12.79□□□□□ -0.36
TMEM39A-208ENST00000486159 ABCB7O75027 752 aa12.78□□□□□ -0.36
TMEM39A-208ENST00000486159 SMARCC1Q92922 1105 aaPredicted RBP12.78□□□□□ -0.36
TMEM39A-208ENST00000486159 ATP6V1AP38606 617 aa12.77□□□□□ -0.37
TMEM39A-208ENST00000486159 MORC1Q86VD1 984 aa12.77□□□□□ -0.37
TMEM39A-208ENST00000486159 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.77□□□□□ -0.372e-6■■□□□ 11.9
TMEM39A-208ENST00000486159 MIER1Q8N108 512 aa12.76□□□□□ -0.37
TMEM39A-208ENST00000486159 KDM6AO15550 1401 aaPredicted RBP12.76□□□□□ -0.37
TMEM39A-208ENST00000486159 GNPATO15228 680 aa12.75□□□□□ -0.37
TMEM39A-208ENST00000486159 ZNF530Q6P9A1 599 aaPredicted RBP12.75□□□□□ -0.37
TMEM39A-208ENST00000486159 RBM42Q9BTD8 480 aaKnown RBP12.75□□□□□ -0.37
TMEM39A-208ENST00000486159 KIF7Q2M1P5 1343 aa12.74□□□□□ -0.37
TMEM39A-208ENST00000486159 IL13P35225 146 aa12.74□□□□□ -0.37
TMEM39A-208ENST00000486159 CNGB1Q14028 1251 aaPredicted RBP12.74□□□□□ -0.37
TMEM39A-208ENST00000486159 AMER1Q5JTC6 1135 aaPredicted RBP12.74□□□□□ -0.37
TMEM39A-208ENST00000486159 SULT6B1Q6IMI4 303 aa12.74□□□□□ -0.37
TMEM39A-208ENST00000486159 FLAD1Q8NFF5 587 aa12.74□□□□□ -0.37
TMEM39A-208ENST00000486159 KDRP35968 1356 aa12.73□□□□□ -0.37
TMEM39A-208ENST00000486159 PLEKHO1Q53GL0 409 aaPredicted RBP12.73□□□□□ -0.37
TMEM39A-208ENST00000486159 CD2APQ9Y5K6 639 aa12.73□□□□□ -0.37
TMEM39A-208ENST00000486159 SSFA2P28290 1259 aa12.72□□□□□ -0.37
TMEM39A-208ENST00000486159 PRELPP51888 382 aa12.72□□□□□ -0.37
TMEM39A-208ENST00000486159 NFATC2IPQ8NCF5 419 aa12.72□□□□□ -0.37
TMEM39A-208ENST00000486159 KNSTRNQ9Y448 316 aa12.72□□□□□ -0.37
TMEM39A-208ENST00000486159 MYH14Q7Z406 1995 aaKnown RBP12.72□□□□□ -0.37
TMEM39A-208ENST00000486159 ERVV-2B6SEH9 535 aa12.71□□□□□ -0.37
TMEM39A-208ENST00000486159 PTCD1O75127 700 aaKnown RBP12.71□□□□□ -0.37
TMEM39A-208ENST00000486159 CABP4P57796 275 aa12.71□□□□□ -0.37
TMEM39A-208ENST00000486159 CC2D1BQ5T0F9 858 aaKnown RBP12.71□□□□□ -0.37
TMEM39A-208ENST00000486159 ARHGEF1Q92888 912 aaKnown RBP12.71□□□□□ -0.37
TMEM39A-208ENST00000486159 DCAF5Q96JK2 942 aa12.71□□□□□ -0.37
TMEM39A-208ENST00000486159 LGR6Q9HBX8 967 aa12.71□□□□□ -0.37
TMEM39A-208ENST00000486159 PER1O15534 1290 aaPredicted RBP12.7□□□□□ -0.38
TMEM39A-208ENST00000486159 CENPBP07199 599 aaPredicted RBP12.7□□□□□ -0.38
TMEM39A-208ENST00000486159 MMP10P09238 476 aa12.7□□□□□ -0.38
TMEM39A-208ENST00000486159 HMOX1P09601 288 aa12.7□□□□□ -0.38
TMEM39A-208ENST00000486159 MTHFSP49914 203 aa12.7□□□□□ -0.38
TMEM39A-208ENST00000486159 DDX10Q13206 875 aaKnown RBP12.7□□□□□ -0.38
TMEM39A-208ENST00000486159 COL5A3P25940 1745 aaPredicted RBP12.7□□□□□ -0.38
TMEM39A-208ENST00000486159 N4BP2Q86UW6 1770 aaPredicted RBP12.69□□□□□ -0.38
TMEM39A-208ENST00000486159 KIAA1551Q9HCM1 1747 aa12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 GRIN3BO60391 1043 aa12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 AMOTQ4VCS5 1084 aa12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 TRAPPC3LQ5T215 181 aa12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 ZNF526Q8TF50 670 aaPredicted RBP12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 SRP68Q9UHB9 627 aaKnown RBP12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 ZBTB12Q9Y330 459 aaPredicted RBP12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 RTCBQ9Y3I0 505 aaKnown RBP12.68□□□□□ -0.38
TMEM39A-208ENST00000486159 CICQ96RK0 1608 aaPredicted RBP12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 SCN11AQ9UI33 1791 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 A0A0G2JLW4 131 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 RPS6KA4O75676 772 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 HSP90AB1P08238 724 aaKnown RBP12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 GYS1P13807 737 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 SLC39A6Q13433 755 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 C1orf141Q5JVX7 400 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 ATP10DQ9P241 1426 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 TJP1Q07157 1748 aa12.67□□□□□ -0.38
TMEM39A-208ENST00000486159 C4AP0C0L4 1744 aa12.66□□□□□ -0.38
TMEM39A-208ENST00000486159 MTHFSDQ2M296 383 aaKnown RBP12.66□□□□□ -0.38
TMEM39A-208ENST00000486159 RC3H1Q5TC82 1133 aaKnown RBP12.66□□□□□ -0.38
TMEM39A-208ENST00000486159 VIRMAQ69YN4 1812 aaKnown RBP12.66□□□□□ -0.38
TMEM39A-208ENST00000486159 CNTNAP4Q9C0A0 1308 aa12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 ZNF831Q5JPB2 1677 aa12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 CCER2I3L3R5 266 aa12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 ANP32CO43423 234 aa12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 CRKLP46109 303 aaKnown RBP12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 COL13A1Q5TAT6 717 aaPredicted RBP12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 INTS5Q6P9B9 1019 aaKnown RBP12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 DNAJC10Q8IXB1 793 aa12.65□□□□□ -0.38
TMEM39A-208ENST00000486159 PXDNLA1KZ92 1463 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms