RNA–Protein interactions for RNA: ENST00000483656.5

HDAC6-226, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 585 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-226ENST00000483656 PCDH11YQ9BZA8 1340 aa13□□□□□ -0.33
HDAC6-226ENST00000483656 BRPF1P55201 1214 aaPredicted RBP13□□□□□ -0.33
HDAC6-226ENST00000483656 FNBP4Q8N3X1 1017 aaPredicted RBP13□□□□□ -0.33
HDAC6-226ENST00000483656 DCAF5Q96JK2 942 aa13□□□□□ -0.33
HDAC6-226ENST00000483656 MRC1P22897 1456 aa12.99□□□□□ -0.33
HDAC6-226ENST00000483656 TCERG1O14776 1098 aaKnown RBP12.99□□□□□ -0.33
HDAC6-226ENST00000483656 HSP90AB1P08238 724 aaKnown RBP12.99□□□□□ -0.33
HDAC6-226ENST00000483656 EIF4A1P60842 406 aaKnown RBP12.99□□□□□ -0.33
HDAC6-226ENST00000483656 UNC5CLQ8IV45 518 aa12.99□□□□□ -0.33
HDAC6-226ENST00000483656 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-226ENST00000483656 NGLY1Q96IV0 654 aa12.99□□□□□ -0.33
HDAC6-226ENST00000483656 C8orf37Q96NL8 207 aa12.99□□□□□ -0.33
HDAC6-226ENST00000483656 SLC52A2Q9HAB3 445 aa12.99□□□□□ -0.33
HDAC6-226ENST00000483656 WNK3Q9BYP7 1800 aa12.98□□□□□ -0.33
HDAC6-226ENST00000483656 BTBD11A6QL63 1104 aa12.98□□□□□ -0.33
HDAC6-226ENST00000483656 PDE3AQ14432 1141 aa12.98□□□□□ -0.33
HDAC6-226ENST00000483656 PPP4R2Q9NY27 417 aa12.98□□□□□ -0.33
HDAC6-226ENST00000483656 NOB1Q9ULX3 412 aaKnown RBP12.98□□□□□ -0.33
HDAC6-226ENST00000483656 THRAP3Q9Y2W1 955 aaKnown RBP12.98□□□□□ -0.33
HDAC6-226ENST00000483656 HEG1Q9ULI3 1381 aa12.97□□□□□ -0.33
HDAC6-226ENST00000483656 RLBP1P12271 317 aa12.97□□□□□ -0.33
HDAC6-226ENST00000483656 ZKSCAN2Q63HK3 967 aa12.97□□□□□ -0.33
HDAC6-226ENST00000483656 NFATC2IPQ8NCF5 419 aa12.97□□□□□ -0.33
HDAC6-226ENST00000483656 DDX54Q8TDD1 881 aaKnown RBP12.97□□□□□ -0.33
HDAC6-226ENST00000483656 PANK1Q8TE04 598 aa12.97□□□□□ -0.33
HDAC6-226ENST00000483656 VPS72Q15906 364 aa12.96□□□□□ -0.33
HDAC6-226ENST00000483656 BARGINQ6ZT62 677 aa12.96□□□□□ -0.33
HDAC6-226ENST00000483656 SOS1Q07889 1333 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-226ENST00000483656 TRIM27P14373 513 aa12.95□□□□□ -0.34
HDAC6-226ENST00000483656 CANXP27824 592 aaKnown RBP12.95□□□□□ -0.34
HDAC6-226ENST00000483656 SLC39A6Q13433 755 aa12.95□□□□□ -0.34
HDAC6-226ENST00000483656 CDCA7Q9BWT1 371 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-226ENST00000483656 KIF16BQ96L93 1317 aa12.94□□□□□ -0.34
HDAC6-226ENST00000483656 ERVV-2B6SEH9 535 aa12.94□□□□□ -0.34
HDAC6-226ENST00000483656 EXOC5O00471 708 aa12.94□□□□□ -0.34
HDAC6-226ENST00000483656 CABP4P57796 275 aa12.94□□□□□ -0.34
HDAC6-226ENST00000483656 ATF7IPQ6VMQ6 1270 aa12.94□□□□□ -0.34
HDAC6-226ENST00000483656 TNS2Q63HR2 1409 aa12.94□□□□□ -0.34
HDAC6-226ENST00000483656 TOGARAM1Q9Y4F4 1720 aa12.93□□□□□ -0.34
HDAC6-226ENST00000483656 B4GALNT3Q6L9W6 998 aa12.93□□□□□ -0.34
HDAC6-226ENST00000483656 ZNF790Q6PG37 636 aa12.93□□□□□ -0.34
HDAC6-226ENST00000483656 DZIP1LQ8IYY4 767 aaKnown RBP12.93□□□□□ -0.34
HDAC6-226ENST00000483656 ARHGAP45Q92619 1136 aa12.93□□□□□ -0.34
HDAC6-226ENST00000483656 CLUAP1Q96AJ1 413 aa12.93□□□□□ -0.34
HDAC6-226ENST00000483656 RGS17Q9UGC6 210 aaPredicted RBP12.93□□□□□ -0.34
HDAC6-226ENST00000483656 USP21Q9UK80 565 aa12.93□□□□□ -0.34
HDAC6-226ENST00000483656 COG6Q9Y2V7 657 aa12.93□□□□□ -0.34
HDAC6-226ENST00000483656 CCDC9Q9Y3X0 531 aaKnown RBP12.93□□□□□ -0.34
HDAC6-226ENST00000483656 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.93□□□□□ -0.34
HDAC6-226ENST00000483656 PRAMEF22A3QJZ6 481 aa12.92□□□□□ -0.34
HDAC6-226ENST00000483656 IPO8O15397 1037 aaKnown RBP12.92□□□□□ -0.34
HDAC6-226ENST00000483656 GIGYF1O75420 1035 aaPredicted RBP12.92□□□□□ -0.34
HDAC6-226ENST00000483656 HOXB7P09629 217 aa12.92□□□□□ -0.34
HDAC6-226ENST00000483656 G2E3Q7L622 706 aa12.92□□□□□ -0.34
HDAC6-226ENST00000483656 AFF2P51816 1311 aa12.91□□□□□ -0.34
HDAC6-226ENST00000483656 RGS12O14924 1447 aa12.91□□□□□ -0.34
HDAC6-226ENST00000483656 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
HDAC6-226ENST00000483656 MEX3CQ5U5Q3 659 aaKnown RBP12.91□□□□□ -0.34
HDAC6-226ENST00000483656 CCDC30Q5VVM6 783 aa12.91□□□□□ -0.34
HDAC6-226ENST00000483656 NECTIN2Q92692 538 aa12.91□□□□□ -0.34
HDAC6-226ENST00000483656 ZNF496Q96IT1 587 aaPredicted RBP12.91□□□□□ -0.34
HDAC6-226ENST00000483656 GLI3P10071 1580 aa12.9□□□□□ -0.34
HDAC6-226ENST00000483656 MS4A1P11836 297 aa12.9□□□□□ -0.34
HDAC6-226ENST00000483656 DDB1Q16531 1140 aa12.9□□□□□ -0.34
HDAC6-226ENST00000483656 FAM98CQ17RN3 349 aaKnown RBP12.9□□□□□ -0.34
HDAC6-226ENST00000483656 HDGFL1Q5TGJ6 251 aa12.9□□□□□ -0.34
HDAC6-226ENST00000483656 TMEM57Q8N5G2 664 aa12.9□□□□□ -0.34
HDAC6-226ENST00000483656 MARCH10Q8NA82 808 aaPredicted RBP12.9□□□□□ -0.34
HDAC6-226ENST00000483656 ABCC4O15439 1325 aa12.89□□□□□ -0.35
HDAC6-226ENST00000483656 ATRNO75882 1429 aa12.89□□□□□ -0.35
HDAC6-226ENST00000483656 PAPPAQ13219 1627 aa12.89□□□□□ -0.35
HDAC6-226ENST00000483656 EIF2S2P20042 333 aaKnown RBP12.89□□□□□ -0.35
HDAC6-226ENST00000483656 MVPQ14764 893 aaKnown RBP12.89□□□□□ -0.35
HDAC6-226ENST00000483656 PIGBQ92521 554 aa12.89□□□□□ -0.35
HDAC6-226ENST00000483656 API5Q9BZZ5 524 aaKnown RBP12.89□□□□□ -0.35
HDAC6-226ENST00000483656 FTSJ3Q8IY81 847 aaKnown RBP12.88□□□□□ -0.35
HDAC6-226ENST00000483656 STK31Q9BXU1 1019 aa12.88□□□□□ -0.35
HDAC6-226ENST00000483656 C5P01031 1676 aa12.88□□□□□ -0.35
HDAC6-226ENST00000483656 KCPQ6ZWJ8 1503 aa12.88□□□□□ -0.35
HDAC6-226ENST00000483656 PTPRCP08575 1304 aa12.88□□□□□ -0.35
HDAC6-226ENST00000483656 UBR2Q8IWV8 1755 aa12.87□□□□□ -0.35
HDAC6-226ENST00000483656 CCDC136Q96JN2 1154 aa12.87□□□□□ -0.35
HDAC6-226ENST00000483656 GJD4Q96KN9 370 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-226ENST00000483656 FMNL2Q96PY5 1086 aa12.87□□□□□ -0.35
HDAC6-226ENST00000483656 TMOD3Q9NYL9 352 aa12.87□□□□□ -0.35
HDAC6-226ENST00000483656 CHPF2Q9P2E5 772 aa12.87□□□□□ -0.35
HDAC6-226ENST00000483656 THSD7AQ9UPZ6 1657 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 ITGB4P16144 1822 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 PDIA6Q15084 440 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 PROSER3Q2NL68 480 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 TTC5Q8N0Z6 440 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 PHAXQ9H814 394 aaKnown RBP12.86□□□□□ -0.35
HDAC6-226ENST00000483656 ATG3Q9NT62 314 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 USP16Q9Y5T5 823 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 BCL9O00512 1426 aa12.86□□□□□ -0.35
HDAC6-226ENST00000483656 ONECUT3O60422 494 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-226ENST00000483656 ANXA1P04083 346 aa12.85□□□□□ -0.35
HDAC6-226ENST00000483656 SNRPA1P09661 255 aaKnown RBP12.85□□□□□ -0.35
HDAC6-226ENST00000483656 PRIM1P49642 420 aaKnown RBP12.85□□□□□ -0.35
HDAC6-226ENST00000483656 FLIIQ13045 1269 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms