RNA–Protein interactions for RNA: ENST00000471894.1

PUM1-208, Transcript of pumilio RNA binding family member 1, human

TSL 3

Gene PUM1, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM1-208	ENST00000471894	SCN11A	Q9UI33	1791 aa		13.67	□□□□□ -0.22
PUM1-208	ENST00000471894	FANCI	Q9NVI1	1328 aa		13.66	□□□□□ -0.22
PUM1-208	ENST00000471894	KDM6A	O15550	1401 aa	Predicted RBP	13.66	□□□□□ -0.22
PUM1-208	ENST00000471894	BTBD11	A6QL63	1104 aa		13.66	□□□□□ -0.22
PUM1-208	ENST00000471894	RXRB	P28702	533 aa		13.66	□□□□□ -0.22
PUM1-208	ENST00000471894	BABAM1	Q9NWV8	329 aa		13.66	□□□□□ -0.22
PUM1-208	ENST00000471894	LRRC37A3	O60309	1634 aa		13.65	□□□□□ -0.22
PUM1-208	ENST00000471894	EXOSC9	Q06265	439 aa	Known RBP	13.65	□□□□□ -0.22
PUM1-208	ENST00000471894	RGS17	Q9UGC6	210 aa	Predicted RBP	13.65	□□□□□ -0.22
PUM1-208	ENST00000471894	ADAMTS7	Q9UKP4	1686 aa		13.64	□□□□□ -0.23
PUM1-208	ENST00000471894	THSD7A	Q9UPZ6	1657 aa		13.64	□□□□□ -0.23
PUM1-208	ENST00000471894	POTEA	Q6S8J7	498 aa		13.63	□□□□□ -0.23
PUM1-208	ENST00000471894	TMOD3	Q9NYL9	352 aa		13.63	□□□□□ -0.23
PUM1-208	ENST00000471894	PRIM1	P49642	420 aa	Known RBP	13.62	□□□□□ -0.23
PUM1-208	ENST00000471894	SYTL4	Q96C24	671 aa	Predicted RBP	13.62	□□□□□ -0.23
PUM1-208	ENST00000471894	ELL2	O00472	640 aa	Predicted RBP	13.61	□□□□□ -0.23
PUM1-208	ENST00000471894	KCNQ3	O43525	872 aa		13.61	□□□□□ -0.23
PUM1-208	ENST00000471894	SLC39A6	Q13433	755 aa		13.61	□□□□□ -0.23
PUM1-208	ENST00000471894	C8orf58	Q8NAV2	365 aa		13.61	□□□□□ -0.23
PUM1-208	ENST00000471894	ACSBG1	Q96GR2	724 aa		13.61	□□□□□ -0.23
PUM1-208	ENST00000471894	RCAN3	Q9UKA8	241 aa		13.61	□□□□□ -0.23
PUM1-208	ENST00000471894	SIPA1L3	O60292	1781 aa	Predicted RBP	13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	CT47B1	P0C2W7	299 aa	Predicted RBP	13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	FAM182B	Q5T319	152 aa		13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	ZNF790	Q6PG37	636 aa		13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	KRT27	Q7Z3Y8	459 aa		13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	TTC5	Q8N0Z6	440 aa		13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	PIGB	Q92521	554 aa		13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	MRC1	P22897	1456 aa		13.6	□□□□□ -0.23
PUM1-208	ENST00000471894	EIF4A1	P60842	406 aa	Known RBP	13.59	□□□□□ -0.23
PUM1-208	ENST00000471894	KRT24	Q2M2I5	525 aa		13.59	□□□□□ -0.23
PUM1-208	ENST00000471894	TWISTNB	Q3B726	338 aa	Predicted RBP	13.59	□□□□□ -0.23
PUM1-208	ENST00000471894	TSPYL6	Q8N831	410 aa		13.59	□□□□□ -0.23
PUM1-208	ENST00000471894	TOGARAM1	Q9Y4F4	1720 aa		13.59	□□□□□ -0.23
PUM1-208	ENST00000471894	ITGB4	P16144	1822 aa		13.58	□□□□□ -0.24
PUM1-208	ENST00000471894	VAMP4	O75379	141 aa		13.58	□□□□□ -0.24
PUM1-208	ENST00000471894	BRWD3	Q6RI45	1802 aa		13.57	□□□□□ -0.24
PUM1-208	ENST00000471894	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.57	□□□□□ -0.24
PUM1-208	ENST00000471894	KDM3B	Q7LBC6	1761 aa		13.57	□□□□□ -0.24
PUM1-208	ENST00000471894	BCL9	O00512	1426 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	DOT1L	Q8TEK3	1739 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	KCNQ2	O43526	872 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	FAM196A	Q6ZSG2	479 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	ZNF428	Q96B54	188 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	FMNL2	Q96PY5	1086 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	ATG3	Q9NT62	314 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	ASAP1	Q9ULH1	1129 aa		13.56	□□□□□ -0.24
PUM1-208	ENST00000471894	PTCD1	O75127	700 aa	Known RBP	13.55	□□□□□ -0.24
PUM1-208	ENST00000471894	RARS	P54136	660 aa	Known RBP	13.55	□□□□□ -0.24
PUM1-208	ENST00000471894	ZNF496	Q96IT1	587 aa	Predicted RBP	13.55	□□□□□ -0.24
PUM1-208	ENST00000471894	SOS1	Q07889	1333 aa	Predicted RBP	13.55	□□□□□ -0.24
PUM1-208	ENST00000471894	GIGYF1	O75420	1035 aa	Predicted RBP	13.54	□□□□□ -0.24
PUM1-208	ENST00000471894	CHMP4A	Q9BY43	222 aa		13.54	□□□□□ -0.24
PUM1-208	ENST00000471894	TCERG1	O14776	1098 aa	Known RBP	13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	BCAR3	O75815	825 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	HOXB7	P09629	217 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	SNRPA1	P09661	255 aa	Known RBP	13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	EIF2S2	P20042	333 aa	Known RBP	13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	ALDH1L2	Q3SY69	923 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	CCDC30	Q5VVM6	783 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	SSH1	Q8WYL5	1049 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	NECTIN2	Q92692	538 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	RBM42	Q9BTD8	480 aa	Known RBP	13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	SMC4	Q9NTJ3	1288 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	HEG1	Q9ULI3	1381 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	RGS12	O14924	1447 aa		13.53	□□□□□ -0.24
PUM1-208	ENST00000471894	SMARCC1	Q92922	1105 aa	Predicted RBP	13.52	□□□□□ -0.25
PUM1-208	ENST00000471894	BCL2L13	Q9BXK5	485 aa		13.52	□□□□□ -0.25
PUM1-208	ENST00000471894	PRAMEF22	A3QJZ6	481 aa		13.51	□□□□□ -0.25
PUM1-208	ENST00000471894	HDGFL1	Q5TGJ6	251 aa		13.51	□□□□□ -0.25
PUM1-208	ENST00000471894	PPP4R3CP	Q6ZMV5	832 aa		13.51	□□□□□ -0.25
PUM1-208	ENST00000471894	PTF1A	Q7RTS3	328 aa		13.51	□□□□□ -0.25
PUM1-208	ENST00000471894	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.51	□□□□□ -0.25
PUM1-208	ENST00000471894	STK31	Q9BXU1	1019 aa		13.51	□□□□□ -0.25
PUM1-208	ENST00000471894	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.51	□□□□□ -0.25
PUM1-208	ENST00000471894	SBF2	Q86WG5	1849 aa		13.5	□□□□□ -0.25
PUM1-208	ENST00000471894	TRIM37	O94972	964 aa		13.5	□□□□□ -0.25
PUM1-208	ENST00000471894	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.5	□□□□□ -0.25
PUM1-208	ENST00000471894	USP16	Q9Y5T5	823 aa		13.5	□□□□□ -0.25
PUM1-208	ENST00000471894	PAPPA	Q13219	1627 aa		13.5	□□□□□ -0.25
PUM1-208	ENST00000471894	KCP	Q6ZWJ8	1503 aa		13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	PLIN1	O60240	522 aa		13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	SLC4A2	P04920	1241 aa		13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	CANX	P27824	592 aa	Known RBP	13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	VSIG10	Q8N0Z9	540 aa		13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	MRPL50	Q8N5N7	158 aa	Known RBP	13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	FRAT1	Q92837	279 aa	Predicted RBP	13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	UBR2	Q8IWV8	1755 aa		13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	NHS	Q6T4R5	1651 aa		13.49	□□□□□ -0.25
PUM1-208	ENST00000471894	PALLD	Q8WX93	1383 aa		13.48	□□□□□ -0.25
PUM1-208	ENST00000471894	BRPF1	P55201	1214 aa	Predicted RBP	13.48	□□□□□ -0.25
PUM1-208	ENST00000471894	RRP1	P56182	461 aa	Known RBP	13.48	□□□□□ -0.25
PUM1-208	ENST00000471894	RNF123	Q5XPI4	1314 aa		13.47	□□□□□ -0.25
PUM1-208	ENST00000471894	LOC102724428	A0A0B4J2F2	783 aa		13.47	□□□□□ -0.25
PUM1-208	ENST00000471894	IPO8	O15397	1037 aa	Known RBP	13.47	□□□□□ -0.25
PUM1-208	ENST00000471894	STARD3NL	O95772	234 aa		13.47	□□□□□ -0.25
PUM1-208	ENST00000471894	ATP6V1A	P38606	617 aa		13.47	□□□□□ -0.25
PUM1-208	ENST00000471894	SIK1	P57059	783 aa		13.47	□□□□□ -0.25
PUM1-208	ENST00000471894	DNAJC10	Q8IXB1	793 aa		13.47	□□□□□ -0.25
PUM1-208	ENST00000471894	DBF4	Q9UBU7	674 aa	Predicted RBP	13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms