RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 PDE1AP54750 535 aa21.97■■□□□ 1.11
MCF2L-221ENST00000469415 PKP1Q13835 747 aa21.97■■□□□ 1.11
MCF2L-221ENST00000469415 USP26Q9BXU7 913 aa21.97■■□□□ 1.11
MCF2L-221ENST00000469415 SSH2Q76I76 1423 aa21.97■■□□□ 1.11
MCF2L-221ENST00000469415 CASC1Q6TDU7 716 aa21.97■■□□□ 1.11
MCF2L-221ENST00000469415 RGPD8O14715 1765 aaPredicted RBP21.97■■□□□ 1.11
MCF2L-221ENST00000469415 FOXD4L6Q3SYB3 417 aaPredicted RBP21.96■■□□□ 1.11
MCF2L-221ENST00000469415 FOXD4L3Q6VB84 417 aaPredicted RBP21.96■■□□□ 1.11
MCF2L-221ENST00000469415 ANKLE2Q86XL3 938 aa21.96■■□□□ 1.11
MCF2L-221ENST00000469415 SNX21Q969T3 373 aa21.96■■□□□ 1.11
MCF2L-221ENST00000469415 DTNBO60941 627 aa21.96■■□□□ 1.11
MCF2L-221ENST00000469415 ZNF530Q6P9A1 599 aaPredicted RBP21.96■■□□□ 1.11
MCF2L-221ENST00000469415 CHPF2Q9P2E5 772 aa21.96■■□□□ 1.11
MCF2L-221ENST00000469415 UBTFL1P0CB47 393 aaPredicted RBP21.95■■□□□ 1.1
MCF2L-221ENST00000469415 ZC3H6P61129 1189 aaKnown RBP21.95■■□□□ 1.1
MCF2L-221ENST00000469415 TEFQ10587 303 aa21.95■■□□□ 1.1
MCF2L-221ENST00000469415 DDX17Q92841 729 aaKnown RBP21.95■■□□□ 1.1
MCF2L-221ENST00000469415 KNDC1Q76NI1 1749 aa21.95■■□□□ 1.1
MCF2L-221ENST00000469415 AKAP12Q02952 1782 aa21.95■■□□□ 1.1
MCF2L-221ENST00000469415 SURF6O75683 361 aaKnown RBP21.94■■□□□ 1.1
MCF2L-221ENST00000469415 ZGPATQ8N5A5 531 aaKnown RBP21.94■■□□□ 1.1
MCF2L-221ENST00000469415 ANO2Q9NQ90 1003 aa21.94■■□□□ 1.1
MCF2L-221ENST00000469415 PRAMEF22A3QJZ6 481 aa21.94■■□□□ 1.1
MCF2L-221ENST00000469415 XRCC6P12956 609 aaKnown RBP eCLIP21.94■■□□□ 1.1
MCF2L-221ENST00000469415 LRRCC1Q9C099 1032 aa21.94■■□□□ 1.1
MCF2L-221ENST00000469415 UNC5CLQ8IV45 518 aa21.93■■□□□ 1.1
MCF2L-221ENST00000469415 USP44Q9H0E7 712 aa21.93■■□□□ 1.1
MCF2L-221ENST00000469415 PI4KAP2A4QPH2 592 aa21.93■■□□□ 1.1
MCF2L-221ENST00000469415 AIMP1Q12904 312 aaKnown RBP21.93■■□□□ 1.1
MCF2L-221ENST00000469415 DIP2AQ14689 1571 aa21.93■■□□□ 1.1
MCF2L-221ENST00000469415 PI4KAP1Q8N8J0 262 aa21.93■■□□□ 1.1
MCF2L-221ENST00000469415 MAP3K5Q99683 1374 aa21.92■■□□□ 1.1
MCF2L-221ENST00000469415 NBPF7P0C2Y1 421 aaPredicted RBP21.92■■□□□ 1.1
MCF2L-221ENST00000469415 KDRP35968 1356 aa21.91■■□□□ 1.1
MCF2L-221ENST00000469415 NEK4P51957 841 aa21.91■■□□□ 1.1
MCF2L-221ENST00000469415 GNAI3P08754 354 aa21.9■■□□□ 1.1
MCF2L-221ENST00000469415 BTBD11A6QL63 1104 aa21.9■■□□□ 1.1
MCF2L-221ENST00000469415 MX1P20591 662 aa21.9■■□□□ 1.1
MCF2L-221ENST00000469415 PPP1R42Q7Z4L9 355 aa21.9■■□□□ 1.1
MCF2L-221ENST00000469415 GBP4Q96PP9 640 aa21.9■■□□□ 1.1
MCF2L-221ENST00000469415 LARP6Q9BRS8 491 aaKnown RBP21.9■■□□□ 1.1
MCF2L-221ENST00000469415 UPF3BQ9BZI7 483 aaKnown RBP21.9■■□□□ 1.1
MCF2L-221ENST00000469415 SRGAP3O43295 1099 aa21.9■■□□□ 1.1
MCF2L-221ENST00000469415 OS9Q13438 667 aaPredicted RBP21.9■■□□□ 1.1
MCF2L-221ENST00000469415 MCTP1Q6DN14 999 aa21.89■■□□□ 1.1
MCF2L-221ENST00000469415 ERC2O15083 957 aa21.89■■□□□ 1.09
MCF2L-221ENST00000469415 DDX11L8A8MPP1 907 aa21.88■■□□□ 1.09
MCF2L-221ENST00000469415 RABEP1Q15276 862 aa21.88■■□□□ 1.09
MCF2L-221ENST00000469415 PIP4K2AP48426 406 aaPredicted RBP21.88■■□□□ 1.09
MCF2L-221ENST00000469415 RAB3GAP1Q15042 981 aa21.88■■□□□ 1.09
MCF2L-221ENST00000469415 IP6K1Q92551 441 aa21.88■■□□□ 1.09
MCF2L-221ENST00000469415 ATP8B2P98198 1209 aa21.88■■□□□ 1.09
MCF2L-221ENST00000469415 SRCIN1Q9C0H9 1055 aa21.88■■□□□ 1.09
MCF2L-221ENST00000469415 PALD1Q9ULE6 856 aa21.87■■□□□ 1.09
MCF2L-221ENST00000469415 REC8O95072 547 aa21.87■■□□□ 1.09
MCF2L-221ENST00000469415 DDIT3P35638 169 aa21.87■■□□□ 1.09
MCF2L-221ENST00000469415 GCP02774 474 aa21.86■■□□□ 1.09
MCF2L-221ENST00000469415 PROSER3Q2NL68 480 aa21.86■■□□□ 1.09
MCF2L-221ENST00000469415 L1TD1Q5T7N2 865 aaKnown RBP21.86■■□□□ 1.09
MCF2L-221ENST00000469415 KIF24Q5T7B8 1368 aa21.86■■□□□ 1.09
MCF2L-221ENST00000469415 SLC39A6Q13433 755 aa21.85■■□□□ 1.09
MCF2L-221ENST00000469415 AXIN2Q9Y2T1 843 aa21.85■■□□□ 1.09
MCF2L-221ENST00000469415 JARID2Q92833 1246 aaPredicted RBP21.85■■□□□ 1.09
MCF2L-221ENST00000469415 IL25Q9H293 177 aa21.85■■□□□ 1.09
MCF2L-221ENST00000469415 DDX49Q9Y6V7 483 aaKnown RBP21.85■■□□□ 1.09
MCF2L-221ENST00000469415 GAS2L3Q86XJ1 694 aa21.85■■□□□ 1.09
MCF2L-221ENST00000469415 CABLES1Q8TDN4 633 aa21.85■■□□□ 1.09
MCF2L-221ENST00000469415 UBE2Q2Q8WVN8 375 aa21.85■■□□□ 1.09
MCF2L-221ENST00000469415 EIF4A1P60842 406 aaKnown RBP21.84■■□□□ 1.09
MCF2L-221ENST00000469415 CWF19L2Q2TBE0 894 aaKnown RBP21.84■■□□□ 1.09
MCF2L-221ENST00000469415 C1orf141Q5JVX7 400 aa21.84■■□□□ 1.09
MCF2L-221ENST00000469415 ST18O60284 1047 aa21.84■■□□□ 1.09
MCF2L-221ENST00000469415 PA2G4Q9UQ80 394 aaKnown RBP21.83■■□□□ 1.09
MCF2L-221ENST00000469415 NRKQ7Z2Y5 1582 aa21.83■■□□□ 1.09
MCF2L-221ENST00000469415 PROSER2Q86WR7 435 aaPredicted RBP21.83■■□□□ 1.08
MCF2L-221ENST00000469415 DDX54Q8TDD1 881 aaKnown RBP21.83■■□□□ 1.08
MCF2L-221ENST00000469415 ANKRD24Q8TF21 1146 aa21.83■■□□□ 1.08
MCF2L-221ENST00000469415 AK9Q5TCS8 1911 aa21.83■■□□□ 1.08
MCF2L-221ENST00000469415 HTATSF1O43719 755 aaKnown RBP21.82■■□□□ 1.08
MCF2L-221ENST00000469415 NLRP2Q9NX02 1062 aa21.82■■□□□ 1.08
MCF2L-221ENST00000469415 BAG4O95429 457 aaKnown RBP21.81■■□□□ 1.08
MCF2L-221ENST00000469415 DNAAF4Q8WXU2 420 aa21.81■■□□□ 1.08
MCF2L-221ENST00000469415 C9orf78Q9NZ63 289 aaPredicted RBP21.81■■□□□ 1.08
MCF2L-221ENST00000469415 PIK3C2AO00443 1686 aa21.81■■□□□ 1.08
MCF2L-221ENST00000469415 SOS1Q07889 1333 aaPredicted RBP21.81■■□□□ 1.08
MCF2L-221ENST00000469415 MYL6BP14649 208 aa21.81■■□□□ 1.08
MCF2L-221ENST00000469415 ARHGAP23Q9P227 1491 aa21.81■■□□□ 1.08
MCF2L-221ENST00000469415 ESYT1Q9BSJ8 1104 aa21.8■■□□□ 1.08
MCF2L-221ENST00000469415 PLEKHO1Q53GL0 409 aaPredicted RBP21.8■■□□□ 1.08
MCF2L-221ENST00000469415 GOLGA6L22H0YM25 854 aa21.79■■□□□ 1.08
MCF2L-221ENST00000469415 CIZ1Q9ULV3 898 aaPredicted RBP21.79■■□□□ 1.08
MCF2L-221ENST00000469415 MAP3K2Q9Y2U5 619 aa21.79■■□□□ 1.08
MCF2L-221ENST00000469415 CHMLP26374 656 aa21.79■■□□□ 1.08
MCF2L-221ENST00000469415 CHRNA2Q15822 529 aa21.79■■□□□ 1.08
MCF2L-221ENST00000469415 PRPF40AO75400 957 aaKnown RBP21.78■■□□□ 1.08
MCF2L-221ENST00000469415 CSB-PGBD3P0DP91 1061 aa21.78■■□□□ 1.08
MCF2L-221ENST00000469415 SIL1Q9H173 461 aa21.78■■□□□ 1.08
MCF2L-221ENST00000469415 GRPEL1Q9HAV7 217 aa21.78■■□□□ 1.08
MCF2L-221ENST00000469415 RRAGDQ9NQL2 400 aaPredicted RBP21.78■■□□□ 1.08
MCF2L-221ENST00000469415 TOPAZ1Q8N9V7 1692 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms