RNA–Protein interactions for RNA: ENST00000463916.5

XRN1-203, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene XRN1, Length 2,075 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-203ENST00000463916 PHACTR3Q96KR7 559 aa17.41■□□□□ 0.38
XRN1-203ENST00000463916 RSPH6AQ9H0K4 717 aa17.41■□□□□ 0.38
XRN1-203ENST00000463916 QSER1Q2KHR3 1735 aa17.41■□□□□ 0.38
XRN1-203ENST00000463916 SCN11AQ9UI33 1791 aa17.41■□□□□ 0.38
XRN1-203ENST00000463916 COL23A1Q86Y22 540 aaPredicted RBP17.41■□□□□ 0.38
XRN1-203ENST00000463916 ATP6V1AP38606 617 aa17.4■□□□□ 0.38
XRN1-203ENST00000463916 PPP1R1BQ9UD71 204 aaPredicted RBP17.4■□□□□ 0.38
XRN1-203ENST00000463916 C4BP0C0L5 1744 aa17.4■□□□□ 0.38
XRN1-203ENST00000463916 RNMTO43148 476 aaKnown RBP17.4■□□□□ 0.38
XRN1-203ENST00000463916 PRKAR2BP31323 418 aa17.4■□□□□ 0.38
XRN1-203ENST00000463916 U2AF1L5P0DN76 240 aaPredicted RBP17.39■□□□□ 0.37
XRN1-203ENST00000463916 ZEB1P37275 1124 aaPredicted RBP17.39■□□□□ 0.37
XRN1-203ENST00000463916 U2AF1Q01081 240 aaKnown RBP eCLIP17.39■□□□□ 0.37
XRN1-203ENST00000463916 NUDCQ9Y266 331 aa17.39■□□□□ 0.37
XRN1-203ENST00000463916 RBM42Q9BTD8 480 aaKnown RBP17.38■□□□□ 0.37
XRN1-203ENST00000463916 SLC52A2Q9HAB3 445 aa17.38■□□□□ 0.37
XRN1-203ENST00000463916 UTRNP46939 3433 aa17.38■□□□□ 0.37
XRN1-203ENST00000463916 SLC16A10Q8TF71 515 aa17.38■□□□□ 0.37
XRN1-203ENST00000463916 PTCD1O75127 700 aaKnown RBP17.37■□□□□ 0.37
XRN1-203ENST00000463916 MSH5O43196 834 aa17.36■□□□□ 0.37
XRN1-203ENST00000463916 ADAMTS7Q9UKP4 1686 aa17.36■□□□□ 0.37
XRN1-203ENST00000463916 VIRMAQ69YN4 1812 aaKnown RBP17.36■□□□□ 0.37
XRN1-203ENST00000463916 GOLGB1Q14789 3259 aaKnown RBP17.36■□□□□ 0.37
XRN1-203ENST00000463916 IL17REQ8NFR9 667 aa17.36■□□□□ 0.37
XRN1-203ENST00000463916 AK7Q96M32 723 aa17.36■□□□□ 0.37
XRN1-203ENST00000463916 MRC1P22897 1456 aa17.35■□□□□ 0.37
XRN1-203ENST00000463916 FCHSD2O94868 740 aa17.35■□□□□ 0.37
XRN1-203ENST00000463916 SLC39A6Q13433 755 aa17.35■□□□□ 0.37
XRN1-203ENST00000463916 GAS2L2Q8NHY3 880 aa17.35■□□□□ 0.37
XRN1-203ENST00000463916 UBR3Q6ZT12 1888 aa17.34■□□□□ 0.37
XRN1-203ENST00000463916 GNAT3A8MTJ3 354 aa17.34■□□□□ 0.37
XRN1-203ENST00000463916 PHF14O94880 888 aa17.34■□□□□ 0.37
XRN1-203ENST00000463916 RALBP1Q15311 655 aa17.34■□□□□ 0.37
XRN1-203ENST00000463916 MAP3K5Q99683 1374 aa17.34■□□□□ 0.37
XRN1-203ENST00000463916 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.33■□□□□ 0.37
XRN1-203ENST00000463916 HMGB2P26583 209 aaKnown RBP17.33■□□□□ 0.37
XRN1-203ENST00000463916 ARXQ96QS3 562 aa17.33■□□□□ 0.37
XRN1-203ENST00000463916 ZNF831Q5JPB2 1677 aa17.33■□□□□ 0.36
XRN1-203ENST00000463916 GNPATO15228 680 aa17.33■□□□□ 0.36
XRN1-203ENST00000463916 MSL1Q68DK7 614 aa17.33■□□□□ 0.36
XRN1-203ENST00000463916 FHDC1Q9C0D6 1143 aaPredicted RBP17.33■□□□□ 0.36
XRN1-203ENST00000463916 COL24A1Q17RW2 1714 aa17.33■□□□□ 0.36
XRN1-203ENST00000463916 FLAD1Q8NFF5 587 aa17.32■□□□□ 0.36
XRN1-203ENST00000463916 SYT17Q9BSW7 474 aa17.31■□□□□ 0.36
XRN1-203ENST00000463916 COL5A3P25940 1745 aaPredicted RBP17.31■□□□□ 0.36
XRN1-203ENST00000463916 SSFA2P28290 1259 aa17.3■□□□□ 0.36
XRN1-203ENST00000463916 MYH14Q7Z406 1995 aaKnown RBP17.3■□□□□ 0.36
XRN1-203ENST00000463916 CEMIPQ8WUJ3 1361 aa17.29■□□□□ 0.36
XRN1-203ENST00000463916 PLEKHF1Q96S99 279 aa17.29■□□□□ 0.36
XRN1-203ENST00000463916 KCPQ6ZWJ8 1503 aa17.29■□□□□ 0.36
XRN1-203ENST00000463916 TJP1Q07157 1748 aa17.29■□□□□ 0.36
XRN1-203ENST00000463916 POLD1P28340 1107 aa17.28■□□□□ 0.36
XRN1-203ENST00000463916 RC3H1Q5TC82 1133 aaKnown RBP17.28■□□□□ 0.36
XRN1-203ENST00000463916 CNTNAP4Q9C0A0 1308 aa17.28■□□□□ 0.36
XRN1-203ENST00000463916 TEFQ10587 303 aa17.28■□□□□ 0.36
XRN1-203ENST00000463916 DNAJC10Q8IXB1 793 aa17.28■□□□□ 0.36
XRN1-203ENST00000463916 MYBBP1AQ9BQG0 1328 aaKnown RBP17.28■□□□□ 0.36
XRN1-203ENST00000463916 CRKLP46109 303 aaKnown RBP17.27■□□□□ 0.36
XRN1-203ENST00000463916 DCTN1Q14203 1278 aa17.27■□□□□ 0.36
XRN1-203ENST00000463916 MCM10Q7L590 875 aa17.27■□□□□ 0.36
XRN1-203ENST00000463916 RTCBQ9Y3I0 505 aaKnown RBP17.27■□□□□ 0.36
XRN1-203ENST00000463916 SIPA1L3O60292 1781 aaPredicted RBP17.27■□□□□ 0.35
XRN1-203ENST00000463916 PRKRIP1Q9H875 184 aaPredicted RBP17.27■□□□□ 0.35
XRN1-203ENST00000463916 RPS6KA4O75676 772 aa17.26■□□□□ 0.35
XRN1-203ENST00000463916 INTS5Q6P9B9 1019 aaKnown RBP17.26■□□□□ 0.35
XRN1-203ENST00000463916 ARHGEF1Q92888 912 aaKnown RBP17.26■□□□□ 0.35
XRN1-203ENST00000463916 CICQ96RK0 1608 aaPredicted RBP17.25■□□□□ 0.35
XRN1-203ENST00000463916 TRAPPC3LQ5T215 181 aa17.25■□□□□ 0.35
XRN1-203ENST00000463916 KCNQ3O43525 872 aa17.25■□□□□ 0.35
XRN1-203ENST00000463916 ZNF790Q6PG37 636 aa17.25■□□□□ 0.35
XRN1-203ENST00000463916 ZNF496Q96IT1 587 aaPredicted RBP17.25■□□□□ 0.35
XRN1-203ENST00000463916 UBR2Q8IWV8 1755 aa17.24■□□□□ 0.35
XRN1-203ENST00000463916 CYP19A1P11511 503 aaPredicted RBP17.24■□□□□ 0.35
XRN1-203ENST00000463916 KLHL34Q8N239 644 aa17.24■□□□□ 0.35
XRN1-203ENST00000463916 TTC5Q8N0Z6 440 aa17.23■□□□□ 0.35
XRN1-203ENST00000463916 RTF1Q92541 710 aaKnown RBP17.23■□□□□ 0.35
XRN1-203ENST00000463916 BTBD11A6QL63 1104 aa17.22■□□□□ 0.35
XRN1-203ENST00000463916 VSIG10Q8N0Z9 540 aa17.22■□□□□ 0.35
XRN1-203ENST00000463916 NLGN2Q8NFZ4 835 aa17.22■□□□□ 0.35
XRN1-203ENST00000463916 ZNF316A6NFI3 1004 aaPredicted RBP17.22■□□□□ 0.35
XRN1-203ENST00000463916 ADRA2BP18089 450 aa17.22■□□□□ 0.35
XRN1-203ENST00000463916 HTATSF1O43719 755 aaKnown RBP17.21■□□□□ 0.35
XRN1-203ENST00000463916 CCDC87Q9NVE4 849 aa17.21■□□□□ 0.35
XRN1-203ENST00000463916 DLG5Q8TDM6 1919 aa17.21■□□□□ 0.35
XRN1-203ENST00000463916 RFC4P35249 363 aa17.2■□□□□ 0.34
XRN1-203ENST00000463916 C4AP0C0L4 1744 aa17.2■□□□□ 0.34
XRN1-203ENST00000463916 GYS1P13807 737 aa17.2■□□□□ 0.34
XRN1-203ENST00000463916 NFE2L2Q16236 605 aa17.2■□□□□ 0.34
XRN1-203ENST00000463916 SRP68Q9UHB9 627 aaKnown RBP17.2■□□□□ 0.34
XRN1-203ENST00000463916 ZBTB1Q9Y2K1 713 aa17.2■□□□□ 0.34
XRN1-203ENST00000463916 HEG1Q9ULI3 1381 aa17.2■□□□□ 0.34
XRN1-203ENST00000463916 NEFMP07197 916 aa17.19■□□□□ 0.34
XRN1-203ENST00000463916 THUMPD2Q9BTF0 503 aaKnown RBP17.19■□□□□ 0.34
XRN1-203ENST00000463916 MIS18AQ9NYP9 233 aa17.19■□□□□ 0.34
XRN1-203ENST00000463916 SOS1Q07889 1333 aaPredicted RBP17.18■□□□□ 0.34
XRN1-203ENST00000463916 MMP10P09238 476 aa17.18■□□□□ 0.34
XRN1-203ENST00000463916 FMNL2Q96PY5 1086 aa17.18■□□□□ 0.34
XRN1-203ENST00000463916 PNNQ9H307 717 aaKnown RBP17.18■□□□□ 0.34
XRN1-203ENST00000463916 MAPK8IP3Q9UPT6 1336 aa17.18■□□□□ 0.34
XRN1-203ENST00000463916 PRAMEF22A3QJZ6 481 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms