RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 NFATC2IPQ8NCF5 419 aa24.96■■□□□ 1.59
USP39-209ENST00000458268 C4BP0C0L5 1744 aa24.95■■□□□ 1.58
USP39-209ENST00000458268 PNPLA7Q6ZV29 1317 aa24.94■■□□□ 1.58
USP39-209ENST00000458268 RNMTO43148 476 aaKnown RBP24.94■■□□□ 1.58
USP39-209ENST00000458268 RALBP1Q15311 655 aa24.94■■□□□ 1.58
USP39-209ENST00000458268 AK7Q96M32 723 aa24.94■■□□□ 1.58
USP39-209ENST00000458268 RSPH6AQ9H0K4 717 aa24.94■■□□□ 1.58
USP39-209ENST00000458268 QSER1Q2KHR3 1735 aa24.94■■□□□ 1.58
USP39-209ENST00000458268 PTCD1O75127 700 aaKnown RBP24.93■■□□□ 1.58
USP39-209ENST00000458268 GAS2L2Q8NHY3 880 aa24.93■■□□□ 1.58
USP39-209ENST00000458268 PHF14O94880 888 aa24.92■■□□□ 1.58
USP39-209ENST00000458268 PHACTR3Q96KR7 559 aa24.92■■□□□ 1.58
USP39-209ENST00000458268 MAP3K5Q99683 1374 aa24.92■■□□□ 1.58
USP39-209ENST00000458268 SRCAPQ6ZRS2 3230 aa24.91■■□□□ 1.58
USP39-209ENST00000458268 ITPK1Q13572 414 aa24.9■■□□□ 1.58
USP39-209ENST00000458268 SMIM5Q71RC9 77 aa24.9■■□□□ 1.58
USP39-209ENST00000458268 LINC00116Q8NCU8 138 aa24.9■■□□□ 1.58
USP39-209ENST00000458268 MTFR1LQ9H019 292 aa24.9■■□□□ 1.58
USP39-209ENST00000458268 SLC52A2Q9HAB3 445 aa24.9■■□□□ 1.58
USP39-209ENST00000458268 GNAT3A8MTJ3 354 aa24.89■■□□□ 1.58
USP39-209ENST00000458268 MYBBP1AQ9BQG0 1328 aaKnown RBP24.88■■□□□ 1.57
USP39-209ENST00000458268 NEFMP07197 916 aa24.88■■□□□ 1.57
USP39-209ENST00000458268 ZNF316A6NFI3 1004 aaPredicted RBP24.87■■□□□ 1.57
USP39-209ENST00000458268 SLC39A6Q13433 755 aa24.87■■□□□ 1.57
USP39-209ENST00000458268 UBR3Q6ZT12 1888 aa24.86■■□□□ 1.57
USP39-209ENST00000458268 GNPATO15228 680 aa24.86■■□□□ 1.57
USP39-209ENST00000458268 FCHSD2O94868 740 aa24.86■■□□□ 1.57
USP39-209ENST00000458268 TEFQ10587 303 aa24.86■■□□□ 1.57
USP39-209ENST00000458268 MSL1Q68DK7 614 aa24.86■■□□□ 1.57
USP39-209ENST00000458268 COL23A1Q86Y22 540 aaPredicted RBP24.86■■□□□ 1.57
USP39-209ENST00000458268 KLHL34Q8N239 644 aa24.86■■□□□ 1.57
USP39-209ENST00000458268 MRC1P22897 1456 aa24.85■■□□□ 1.57
USP39-209ENST00000458268 SLC4A9Q96Q91 983 aa24.85■■□□□ 1.57
USP39-209ENST00000458268 HMGB2P26583 209 aaKnown RBP24.84■■□□□ 1.57
USP39-209ENST00000458268 ADAMTS7Q9UKP4 1686 aa24.84■■□□□ 1.57
USP39-209ENST00000458268 PTGER2P43116 358 aa24.83■■□□□ 1.57
USP39-209ENST00000458268 RTF1Q92541 710 aaKnown RBP24.83■■□□□ 1.57
USP39-209ENST00000458268 COL5A3P25940 1745 aaPredicted RBP24.83■■□□□ 1.57
USP39-209ENST00000458268 IL17REQ8NFR9 667 aa24.82■■□□□ 1.56
USP39-209ENST00000458268 TJP1Q07157 1748 aa24.81■■□□□ 1.56
USP39-209ENST00000458268 POLD1P28340 1107 aa24.81■■□□□ 1.56
USP39-209ENST00000458268 AMIGO3Q86WK7 504 aa24.81■■□□□ 1.56
USP39-209ENST00000458268 SLC16A10Q8TF71 515 aa24.81■■□□□ 1.56
USP39-209ENST00000458268 MAPK8IP3Q9UPT6 1336 aa24.81■■□□□ 1.56
USP39-209ENST00000458268 DLG5Q8TDM6 1919 aa24.8■■□□□ 1.56
USP39-209ENST00000458268 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.8■■□□□ 1.56
USP39-209ENST00000458268 MCM10Q7L590 875 aa24.8■■□□□ 1.56
USP39-209ENST00000458268 TTC5Q8N0Z6 440 aa24.8■■□□□ 1.56
USP39-209ENST00000458268 FLAD1Q8NFF5 587 aa24.8■■□□□ 1.56
USP39-209ENST00000458268 PRKRIP1Q9H875 184 aaPredicted RBP24.8■■□□□ 1.56
USP39-209ENST00000458268 DCTN1Q14203 1278 aa24.79■■□□□ 1.56
USP39-209ENST00000458268 ZNF831Q5JPB2 1677 aa24.78■■□□□ 1.56
USP39-209ENST00000458268 SIPA1L3O60292 1781 aaPredicted RBP24.78■■□□□ 1.56
USP39-209ENST00000458268 ARXQ96QS3 562 aa24.78■■□□□ 1.56
USP39-209ENST00000458268 WDR43Q15061 677 aaKnown RBP eCLIP24.77■■□□□ 1.56
USP39-209ENST00000458268 DNAJC10Q8IXB1 793 aa24.77■■□□□ 1.56
USP39-209ENST00000458268 SSFA2P28290 1259 aa24.76■■□□□ 1.55
USP39-209ENST00000458268 RTCBQ9Y3I0 505 aaKnown RBP24.76■■□□□ 1.55
USP39-209ENST00000458268 MYH14Q7Z406 1995 aaKnown RBP24.76■■□□□ 1.55
USP39-209ENST00000458268 FHDC1Q9C0D6 1143 aaPredicted RBP24.75■■□□□ 1.55
USP39-209ENST00000458268 PNNQ9H307 717 aaKnown RBP24.75■■□□□ 1.55
USP39-209ENST00000458268 KCPQ6ZWJ8 1503 aa24.75■■□□□ 1.55
USP39-209ENST00000458268 CRKLP46109 303 aaKnown RBP24.74■■□□□ 1.55
USP39-209ENST00000458268 CCDC146Q8IYE0 955 aa24.74■■□□□ 1.55
USP39-209ENST00000458268 SGIP1Q9BQI5 828 aa24.74■■□□□ 1.55
USP39-209ENST00000458268 UBR2Q8IWV8 1755 aa24.74■■□□□ 1.55
USP39-209ENST00000458268 CNTNAP4Q9C0A0 1308 aa24.73■■□□□ 1.55
USP39-209ENST00000458268 BTBD11A6QL63 1104 aa24.73■■□□□ 1.55
USP39-209ENST00000458268 TRAPPC3LQ5T215 181 aa24.72■■□□□ 1.55
USP39-209ENST00000458268 PLEKHF1Q96S99 279 aa24.72■■□□□ 1.55
USP39-209ENST00000458268 CEMIPQ8WUJ3 1361 aa24.71■■□□□ 1.55
USP39-209ENST00000458268 NFE2L2Q16236 605 aa24.71■■□□□ 1.55
USP39-209ENST00000458268 ZNF790Q6PG37 636 aa24.7■■□□□ 1.54
USP39-209ENST00000458268 C4AP0C0L4 1744 aa24.69■■□□□ 1.54
USP39-209ENST00000458268 COL24A1Q17RW2 1714 aa24.69■■□□□ 1.54
USP39-209ENST00000458268 CICQ96RK0 1608 aaPredicted RBP24.69■■□□□ 1.54
USP39-209ENST00000458268 KCNQ3O43525 872 aa24.69■■□□□ 1.54
USP39-209ENST00000458268 RPS6KA4O75676 772 aa24.69■■□□□ 1.54
USP39-209ENST00000458268 RC3H1Q5TC82 1133 aaKnown RBP24.69■■□□□ 1.54
USP39-209ENST00000458268 ZNF496Q96IT1 587 aaPredicted RBP24.69■■□□□ 1.54
USP39-209ENST00000458268 THUMPD2Q9BTF0 503 aaKnown RBP24.69■■□□□ 1.54
USP39-209ENST00000458268 RFC4P35249 363 aa24.68■■□□□ 1.54
USP39-209ENST00000458268 NEUROD2Q15784 382 aa24.68■■□□□ 1.54
USP39-209ENST00000458268 CCDC87Q9NVE4 849 aa24.68■■□□□ 1.54
USP39-209ENST00000458268 RRP7AQ9Y3A4 280 aaKnown RBP24.68■■□□□ 1.54
USP39-209ENST00000458268 ARHGEF1Q92888 912 aaKnown RBP24.67■■□□□ 1.54
USP39-209ENST00000458268 SYT17Q9BSW7 474 aa24.67■■□□□ 1.54
USP39-209ENST00000458268 ZNF330Q9Y3S2 320 aaPredicted RBP24.67■■□□□ 1.54
USP39-209ENST00000458268 DCAF8L1A6NGE4 600 aa24.66■■□□□ 1.54
USP39-209ENST00000458268 HTATSF1O43719 755 aaKnown RBP24.66■■□□□ 1.54
USP39-209ENST00000458268 FMNL2Q96PY5 1086 aa24.66■■□□□ 1.54
USP39-209ENST00000458268 MIS18AQ9NYP9 233 aa24.66■■□□□ 1.54
USP39-209ENST00000458268 CYP19A1P11511 503 aaPredicted RBP24.65■■□□□ 1.54
USP39-209ENST00000458268 CANXP27824 592 aaKnown RBP24.65■■□□□ 1.54
USP39-209ENST00000458268 HEG1Q9ULI3 1381 aa24.65■■□□□ 1.54
USP39-209ENST00000458268 ANP32CO43423 234 aa24.64■■□□□ 1.54
USP39-209ENST00000458268 RIPK4P57078 832 aa24.64■■□□□ 1.54
USP39-209ENST00000458268 INTS5Q6P9B9 1019 aaKnown RBP24.64■■□□□ 1.54
USP39-209ENST00000458268 PELP1Q8IZL8 1130 aaKnown RBP24.64■■□□□ 1.54
USP39-209ENST00000458268 SRP68Q9UHB9 627 aaKnown RBP24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms