RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 C5P01031 1676 aa19.68■□□□□ 0.74
USP39-206ENST00000448971 MTHFSP49914 203 aa19.68■□□□□ 0.74
USP39-206ENST00000448971 NKX1-1Q15270 411 aaPredicted RBP19.66■□□□□ 0.74
USP39-206ENST00000448971 PIGBQ92521 554 aa19.66■□□□□ 0.74
USP39-206ENST00000448971 ITGB4P16144 1822 aa19.66■□□□□ 0.74
USP39-206ENST00000448971 SMARCC1Q92922 1105 aaPredicted RBP19.65■□□□□ 0.74
USP39-206ENST00000448971 SMIM5Q71RC9 77 aa19.64■□□□□ 0.73
USP39-206ENST00000448971 TOGARAM1Q9Y4F4 1720 aa19.63■□□□□ 0.73
USP39-206ENST00000448971 SPG7Q9UQ90 795 aa19.63■□□□□ 0.73
USP39-206ENST00000448971 C4BP0C0L5 1744 aa19.62■□□□□ 0.73
USP39-206ENST00000448971 COL3A1P02461 1466 aaPredicted RBP19.62■□□□□ 0.73
USP39-206ENST00000448971 SLC4A2P04920 1241 aa19.62■□□□□ 0.73
USP39-206ENST00000448971 IL13P35225 146 aa19.62■□□□□ 0.73
USP39-206ENST00000448971 ATP10DQ9P241 1426 aa19.61■□□□□ 0.73
USP39-206ENST00000448971 PLEKHG2Q9H7P9 1386 aa19.61■□□□□ 0.73
USP39-206ENST00000448971 UBR3Q6ZT12 1888 aa19.61■□□□□ 0.73
USP39-206ENST00000448971 DIAPH1O60610 1272 aaKnown RBP19.61■□□□□ 0.73
USP39-206ENST00000448971 DDX10Q13206 875 aaKnown RBP19.61■□□□□ 0.73
USP39-206ENST00000448971 AK7Q96M32 723 aa19.61■□□□□ 0.73
USP39-206ENST00000448971 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.6■□□□□ 0.73
USP39-206ENST00000448971 SULT6B1Q6IMI4 303 aa19.6■□□□□ 0.73
USP39-206ENST00000448971 AEBP1Q8IUX7 1158 aa19.6■□□□□ 0.73
USP39-206ENST00000448971 CFAP53Q96M91 514 aa19.6■□□□□ 0.73
USP39-206ENST00000448971 LOC102724428A0A0B4J2F2 783 aa19.59■□□□□ 0.73
USP39-206ENST00000448971 SIK1P57059 783 aa19.59■□□□□ 0.73
USP39-206ENST00000448971 LINC00116Q8NCU8 138 aa19.59■□□□□ 0.73
USP39-206ENST00000448971 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.59■□□□□ 0.739e-7■□□□□ 8.5
USP39-206ENST00000448971 ADCY9O60503 1353 aa19.58■□□□□ 0.73
USP39-206ENST00000448971 KDRP35968 1356 aa19.58■□□□□ 0.73
USP39-206ENST00000448971 PHF14O94880 888 aa19.58■□□□□ 0.72
USP39-206ENST00000448971 SSFA2P28290 1259 aa19.58■□□□□ 0.72
USP39-206ENST00000448971 PPP2R1AP30153 589 aa19.58■□□□□ 0.72
USP39-206ENST00000448971 ASAP1Q9ULH1 1129 aa19.58■□□□□ 0.72
USP39-206ENST00000448971 U2SURPO15042 1029 aaKnown RBP19.56■□□□□ 0.72
USP39-206ENST00000448971 HMOX1P09601 288 aa19.56■□□□□ 0.72
USP39-206ENST00000448971 ITPK1Q13572 414 aa19.56■□□□□ 0.72
USP39-206ENST00000448971 GPBP1L1Q9HC44 474 aaPredicted RBP19.56■□□□□ 0.72
USP39-206ENST00000448971 PLEKHO1Q53GL0 409 aaPredicted RBP19.55■□□□□ 0.72
USP39-206ENST00000448971 IFNL2Q8IZJ0 200 aa19.55■□□□□ 0.72
USP39-206ENST00000448971 PHKG2P15735 406 aa19.54■□□□□ 0.72
USP39-206ENST00000448971 ZNF530Q6P9A1 599 aaPredicted RBP19.54■□□□□ 0.72
USP39-206ENST00000448971 ATG3Q9NT62 314 aa19.54■□□□□ 0.72
USP39-206ENST00000448971 TMOD3Q9NYL9 352 aa19.54■□□□□ 0.72
USP39-206ENST00000448971 AMOTQ4VCS5 1084 aa19.53■□□□□ 0.72
USP39-206ENST00000448971 WWC3Q9ULE0 1092 aa19.53■□□□□ 0.72
USP39-206ENST00000448971 ATP6V1AP38606 617 aa19.52■□□□□ 0.72
USP39-206ENST00000448971 IFFO2Q5TF58 517 aa19.52■□□□□ 0.72
USP39-206ENST00000448971 GNPATO15228 680 aa19.51■□□□□ 0.71
USP39-206ENST00000448971 C1orf141Q5JVX7 400 aa19.51■□□□□ 0.71
USP39-206ENST00000448971 ZNF526Q8TF50 670 aaPredicted RBP19.51■□□□□ 0.71
USP39-206ENST00000448971 NUDCQ9Y266 331 aa19.51■□□□□ 0.71
USP39-206ENST00000448971 SLC4A9Q96Q91 983 aa19.5■□□□□ 0.71
USP39-206ENST00000448971 HSP90AB1P08238 724 aaKnown RBP19.49■□□□□ 0.71
USP39-206ENST00000448971 HSPA6P17066 643 aa19.49■□□□□ 0.71
USP39-206ENST00000448971 RALBP1Q15311 655 aa19.49■□□□□ 0.71
USP39-206ENST00000448971 MMP10P09238 476 aa19.48■□□□□ 0.71
USP39-206ENST00000448971 ZNF316A6NFI3 1004 aaPredicted RBP19.47■□□□□ 0.71
USP39-206ENST00000448971 KIF3CO14782 793 aa19.47■□□□□ 0.71
USP39-206ENST00000448971 KDM6AO15550 1401 aaPredicted RBP19.47■□□□□ 0.71
USP39-206ENST00000448971 ERVV-2B6SEH9 535 aa19.46■□□□□ 0.71
USP39-206ENST00000448971 U2AF1L5P0DN76 240 aaPredicted RBP19.46■□□□□ 0.71
USP39-206ENST00000448971 U2AF1Q01081 240 aaKnown RBP eCLIP19.46■□□□□ 0.71
USP39-206ENST00000448971 TRAPPC3LQ5T215 181 aa19.46■□□□□ 0.71
USP39-206ENST00000448971 DCAF5Q96JK2 942 aa19.46■□□□□ 0.71
USP39-206ENST00000448971 TGFB2P61812 414 aa19.45■□□□□ 0.7
USP39-206ENST00000448971 RC3H1Q5TC82 1133 aaKnown RBP19.45■□□□□ 0.7
USP39-206ENST00000448971 NLGN1Q8N2Q7 840 aa19.45■□□□□ 0.7
USP39-206ENST00000448971 KIF13BQ9NQT8 1826 aa19.45■□□□□ 0.7
USP39-206ENST00000448971 MYBBP1AQ9BQG0 1328 aaKnown RBP19.45■□□□□ 0.7
USP39-206ENST00000448971 PXDNLA1KZ92 1463 aa19.44■□□□□ 0.7
USP39-206ENST00000448971 ARHGEF1Q92888 912 aaKnown RBP19.44■□□□□ 0.7
USP39-206ENST00000448971 RTCBQ9Y3I0 505 aaKnown RBP19.44■□□□□ 0.7
USP39-206ENST00000448971 KIAA1551Q9HCM1 1747 aa19.43■□□□□ 0.7
USP39-206ENST00000448971 A0A0G2JLW4 131 aa19.43■□□□□ 0.7
USP39-206ENST00000448971 PRKAR2BP31323 418 aa19.43■□□□□ 0.7
USP39-206ENST00000448971 AKAP4Q5JQC9 854 aa19.43■□□□□ 0.7
USP39-206ENST00000448971 CICQ96RK0 1608 aaPredicted RBP19.43■□□□□ 0.7
USP39-206ENST00000448971 MTHFSDQ2M296 383 aaKnown RBP19.42■□□□□ 0.7
USP39-206ENST00000448971 RBM42Q9BTD8 480 aaKnown RBP19.42■□□□□ 0.7
USP39-206ENST00000448971 MYH14Q7Z406 1995 aaKnown RBP19.42■□□□□ 0.7
USP39-206ENST00000448971 ZNF831Q5JPB2 1677 aa19.42■□□□□ 0.7
USP39-206ENST00000448971 RPS6KA4O75676 772 aa19.41■□□□□ 0.7
USP39-206ENST00000448971 GYS1P13807 737 aa19.41■□□□□ 0.7
USP39-206ENST00000448971 CABP4P57796 275 aa19.41■□□□□ 0.7
USP39-206ENST00000448971 RSPH6AQ9H0K4 717 aa19.41■□□□□ 0.7
USP39-206ENST00000448971 N4BP2Q86UW6 1770 aaPredicted RBP19.41■□□□□ 0.7
USP39-206ENST00000448971 SCN11AQ9UI33 1791 aa19.4■□□□□ 0.7
USP39-206ENST00000448971 GAS2L2Q8NHY3 880 aa19.4■□□□□ 0.7
USP39-206ENST00000448971 CNTNAP4Q9C0A0 1308 aa19.4■□□□□ 0.7
USP39-206ENST00000448971 KCNA3P22001 575 aa19.39■□□□□ 0.69
USP39-206ENST00000448971 BCS1LQ9Y276 419 aa19.39■□□□□ 0.69
USP39-206ENST00000448971 C10orf71Q711Q0 1435 aa19.39■□□□□ 0.69
USP39-206ENST00000448971 DPEP1P16444 411 aa19.38■□□□□ 0.69
USP39-206ENST00000448971 MRC1P22897 1456 aa19.38■□□□□ 0.69
USP39-206ENST00000448971 PRKRIP1Q9H875 184 aaPredicted RBP19.38■□□□□ 0.69
USP39-206ENST00000448971 COL5A3P25940 1745 aaPredicted RBP19.37■□□□□ 0.69
USP39-206ENST00000448971 NEFMP07197 916 aa19.37■□□□□ 0.69
USP39-206ENST00000448971 RFC4P35249 363 aa19.37■□□□□ 0.69
USP39-206ENST00000448971 CCDC87Q9NVE4 849 aa19.37■□□□□ 0.69
USP39-206ENST00000448971 FCHSD2O94868 740 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms