RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 RNMTO43148 476 aaKnown RBP13.95□□□□□ -0.18
MCF2L-216ENST00000439475 PRKAR2BP31323 418 aa13.95□□□□□ -0.18
MCF2L-216ENST00000439475 PAPPAQ13219 1627 aa13.94□□□□□ -0.18
MCF2L-216ENST00000439475 GNAT3A8MTJ3 354 aa13.94□□□□□ -0.18
MCF2L-216ENST00000439475 PDGFDQ9GZP0 370 aaPredicted RBP13.94□□□□□ -0.18
MCF2L-216ENST00000439475 SLC52A2Q9HAB3 445 aa13.94□□□□□ -0.18
MCF2L-216ENST00000439475 PNPLA7Q6ZV29 1317 aa13.93□□□□□ -0.18
MCF2L-216ENST00000439475 KDM6AO15550 1401 aaPredicted RBP13.93□□□□□ -0.18
MCF2L-216ENST00000439475 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
MCF2L-216ENST00000439475 POLD1P28340 1107 aa13.93□□□□□ -0.18
MCF2L-216ENST00000439475 RTF1Q92541 710 aaKnown RBP13.93□□□□□ -0.18
MCF2L-216ENST00000439475 RSPH6AQ9H0K4 717 aa13.93□□□□□ -0.18
MCF2L-216ENST00000439475 LGR6Q9HBX8 967 aa13.93□□□□□ -0.18
MCF2L-216ENST00000439475 TEFQ10587 303 aa13.92□□□□□ -0.18
MCF2L-216ENST00000439475 CASZ1Q86V15 1759 aa13.91□□□□□ -0.18
MCF2L-216ENST00000439475 SCN11AQ9UI33 1791 aa13.91□□□□□ -0.18
MCF2L-216ENST00000439475 MYBBP1AQ9BQG0 1328 aaKnown RBP13.9□□□□□ -0.18
MCF2L-216ENST00000439475 QSER1Q2KHR3 1735 aa13.9□□□□□ -0.18
MCF2L-216ENST00000439475 ZNF316A6NFI3 1004 aaPredicted RBP13.9□□□□□ -0.18
MCF2L-216ENST00000439475 PTCD1O75127 700 aaKnown RBP13.9□□□□□ -0.18
MCF2L-216ENST00000439475 SSFA2P28290 1259 aa13.9□□□□□ -0.18
MCF2L-216ENST00000439475 COL23A1Q86Y22 540 aaPredicted RBP13.9□□□□□ -0.18
MCF2L-216ENST00000439475 MAP3K5Q99683 1374 aa13.9□□□□□ -0.18
MCF2L-216ENST00000439475 C5P01031 1676 aa13.9□□□□□ -0.18
MCF2L-216ENST00000439475 TAF1LQ8IZX4 1826 aa13.9□□□□□ -0.18
MCF2L-216ENST00000439475 HTATSF1O43719 755 aaKnown RBP13.89□□□□□ -0.19
MCF2L-216ENST00000439475 PTGER2P43116 358 aa13.89□□□□□ -0.19
MCF2L-216ENST00000439475 ITPK1Q13572 414 aa13.89□□□□□ -0.19
MCF2L-216ENST00000439475 RC3H1Q5TC82 1133 aaKnown RBP13.89□□□□□ -0.19
MCF2L-216ENST00000439475 TTC5Q8N0Z6 440 aa13.89□□□□□ -0.19
MCF2L-216ENST00000439475 LINC00116Q8NCU8 138 aa13.89□□□□□ -0.19
MCF2L-216ENST00000439475 PHACTR3Q96KR7 559 aa13.89□□□□□ -0.19
MCF2L-216ENST00000439475 ARXQ96QS3 562 aa13.89□□□□□ -0.19
MCF2L-216ENST00000439475 RTCBQ9Y3I0 505 aaKnown RBP13.89□□□□□ -0.19
MCF2L-216ENST00000439475 GNPATO15228 680 aa13.88□□□□□ -0.19
MCF2L-216ENST00000439475 TRAPPC3LQ5T215 181 aa13.88□□□□□ -0.19
MCF2L-216ENST00000439475 IL17REQ8NFR9 667 aa13.88□□□□□ -0.19
MCF2L-216ENST00000439475 MAPK8IP3Q9UPT6 1336 aa13.88□□□□□ -0.19
MCF2L-216ENST00000439475 C4BP0C0L5 1744 aa13.87□□□□□ -0.19
MCF2L-216ENST00000439475 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.87□□□□□ -0.19
MCF2L-216ENST00000439475 PHF14O94880 888 aa13.87□□□□□ -0.19
MCF2L-216ENST00000439475 VIRMAQ69YN4 1812 aaKnown RBP13.86□□□□□ -0.19
MCF2L-216ENST00000439475 RPS6KA4O75676 772 aa13.86□□□□□ -0.19
MCF2L-216ENST00000439475 ADRA2BP18089 450 aa13.86□□□□□ -0.19
MCF2L-216ENST00000439475 SLC39A6Q13433 755 aa13.86□□□□□ -0.19
MCF2L-216ENST00000439475 VSIG10Q8N0Z9 540 aa13.86□□□□□ -0.19
MCF2L-216ENST00000439475 SLC4A9Q96Q91 983 aa13.86□□□□□ -0.19
MCF2L-216ENST00000439475 SGIP1Q9BQI5 828 aa13.86□□□□□ -0.19
MCF2L-216ENST00000439475 PRKRIP1Q9H875 184 aaPredicted RBP13.86□□□□□ -0.19
MCF2L-216ENST00000439475 CNTNAP4Q9C0A0 1308 aa13.86□□□□□ -0.19
MCF2L-216ENST00000439475 BTBD11A6QL63 1104 aa13.85□□□□□ -0.19
MCF2L-216ENST00000439475 WDR43Q15061 677 aaKnown RBP eCLIP13.85□□□□□ -0.19
MCF2L-216ENST00000439475 TEX13AQ9BXU3 409 aaPredicted RBP13.85□□□□□ -0.19
MCF2L-216ENST00000439475 ZNF831Q5JPB2 1677 aa13.85□□□□□ -0.19
MCF2L-216ENST00000439475 RFC4P35249 363 aa13.84□□□□□ -0.19
MCF2L-216ENST00000439475 TUBGCP6Q96RT7 1819 aa13.84□□□□□ -0.19
MCF2L-216ENST00000439475 MRC1P22897 1456 aa13.84□□□□□ -0.19
MCF2L-216ENST00000439475 STARD3NLO95772 234 aa13.83□□□□□ -0.2
MCF2L-216ENST00000439475 ZNF790Q6PG37 636 aa13.83□□□□□ -0.2
MCF2L-216ENST00000439475 DNAJC10Q8IXB1 793 aa13.83□□□□□ -0.2
MCF2L-216ENST00000439475 KLHL34Q8N239 644 aa13.83□□□□□ -0.2
MCF2L-216ENST00000439475 PLEKHF1Q96S99 279 aa13.83□□□□□ -0.2
MCF2L-216ENST00000439475 SYT17Q9BSW7 474 aa13.83□□□□□ -0.2
MCF2L-216ENST00000439475 FHDC1Q9C0D6 1143 aaPredicted RBP13.83□□□□□ -0.2
MCF2L-216ENST00000439475 ADAMTS7Q9UKP4 1686 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 CRKLP46109 303 aaKnown RBP13.82□□□□□ -0.2
MCF2L-216ENST00000439475 TAF7Q15545 349 aaPredicted RBP13.82□□□□□ -0.2
MCF2L-216ENST00000439475 NFE2L2Q16236 605 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 MSL1Q68DK7 614 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 MCM10Q7L590 875 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 NLGN1Q8N2Q7 840 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 FMNL2Q96PY5 1086 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 UBR3Q6ZT12 1888 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 CEMIPQ8WUJ3 1361 aa13.82□□□□□ -0.2
MCF2L-216ENST00000439475 NPM2Q86SE8 214 aaKnown RBP13.81□□□□□ -0.2
MCF2L-216ENST00000439475 PNISRQ8TF01 805 aaKnown RBP13.81□□□□□ -0.2
MCF2L-216ENST00000439475 ARHGEF1Q92888 912 aaKnown RBP13.81□□□□□ -0.2
MCF2L-216ENST00000439475 ANP32CO43423 234 aa13.8□□□□□ -0.2
MCF2L-216ENST00000439475 LMOD3Q0VAK6 560 aa13.8□□□□□ -0.2
MCF2L-216ENST00000439475 DCTN1Q14203 1278 aa13.8□□□□□ -0.2
MCF2L-216ENST00000439475 SMIM5Q71RC9 77 aa13.8□□□□□ -0.2
MCF2L-216ENST00000439475 CCDC87Q9NVE4 849 aa13.8□□□□□ -0.2
MCF2L-216ENST00000439475 CYP19A1P11511 503 aaPredicted RBP13.79□□□□□ -0.2
MCF2L-216ENST00000439475 RIPK4P57078 832 aa13.79□□□□□ -0.2
MCF2L-216ENST00000439475 AMIGO3Q86WK7 504 aa13.79□□□□□ -0.2
MCF2L-216ENST00000439475 ZNF496Q96IT1 587 aaPredicted RBP13.79□□□□□ -0.2
MCF2L-216ENST00000439475 HEG1Q9ULI3 1381 aa13.79□□□□□ -0.2
MCF2L-216ENST00000439475 COL5A3P25940 1745 aaPredicted RBP13.78□□□□□ -0.2
MCF2L-216ENST00000439475 ZPR1O75312 459 aa13.78□□□□□ -0.2
MCF2L-216ENST00000439475 INTS5Q6P9B9 1019 aaKnown RBP13.78□□□□□ -0.2
MCF2L-216ENST00000439475 RUNDC1Q96C34 613 aa13.78□□□□□ -0.2
MCF2L-216ENST00000439475 COL24A1Q17RW2 1714 aa13.78□□□□□ -0.2
MCF2L-216ENST00000439475 A0A087WZG4 1122 aa13.77□□□□□ -0.21
MCF2L-216ENST00000439475 SNRPA1P09661 255 aaKnown RBP13.77□□□□□ -0.21
MCF2L-216ENST00000439475 CANXP27824 592 aaKnown RBP13.77□□□□□ -0.21
MCF2L-216ENST00000439475 MYH14Q7Z406 1995 aaKnown RBP13.77□□□□□ -0.21
MCF2L-216ENST00000439475 CD2APQ9Y5K6 639 aa13.77□□□□□ -0.21
MCF2L-216ENST00000439475 KCPQ6ZWJ8 1503 aa13.76□□□□□ -0.21
MCF2L-216ENST00000439475 TMPOP42166 694 aaKnown RBP13.76□□□□□ -0.21
MCF2L-216ENST00000439475 ADAMTS8Q9UP79 889 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 163.8 ms