RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 GYS2P54840 703 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 SECISBP2LQ93073 1101 aaKnown RBP8.87□□□□□ -0.99
CPSF6-202ENST00000435070 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.87□□□□□ -0.99
CPSF6-202ENST00000435070 SHANK2Q9UPX8 1470 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 JPH4Q96JJ6 628 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 MEIS3Q99687 375 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 CCDC144BQ3MJ40 725 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 CCDC144CPQ8IYA2 1237 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 FAM200AQ8TCP9 573 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 PHACTR3Q96KR7 559 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 TULP2O00295 520 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 TYRO3Q06418 890 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.87□□□□□ -0.99
CPSF6-202ENST00000435070 ESYT1Q9BSJ8 1104 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 FUCA2Q9BTY2 467 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 API5Q9BZZ5 524 aaKnown RBP8.87□□□□□ -0.99
CPSF6-202ENST00000435070 SYNJ2O15056 1496 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 GOLGA6L4A6NEF3 574 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 PTPRTO14522 1441 aa8.87□□□□□ -0.99
CPSF6-202ENST00000435070 INTS4Q96HW7 963 aaKnown RBP8.87□□□□□ -0.99
CPSF6-202ENST00000435070 ZCCHC17Q9NP64 241 aaKnown RBP8.87□□□□□ -0.99
CPSF6-202ENST00000435070 PDE1AP54750 535 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 RSPH4AQ5TD94 716 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 CBX8Q9HC52 389 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 LIG1P18858 919 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 RGS22Q8NE09 1264 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 TFIP11Q9UBB9 837 aaKnown RBP8.86□□□□□ -0.99
CPSF6-202ENST00000435070 LAMC1P11047 1609 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 ZNF446Q9NWS9 450 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 DNAJC5BQ9UF47 199 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 MAGI1Q96QZ7 1491 aaPredicted RBP8.86□□□□□ -0.99
CPSF6-202ENST00000435070 FAM83GA6ND36 823 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 CCDC83Q8IWF9 413 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 ANKRD44Q8N8A2 993 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 MBIPQ9NS73 344 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 F13A1P00488 732 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 MAP3K11Q16584 847 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 CEP85Q6P2H3 762 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 NUP62CLQ9H1M0 184 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 MYO5CQ9NQX4 1742 aa8.86□□□□□ -0.99
CPSF6-202ENST00000435070 SYT10Q6XYQ8 523 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 KRBA2Q6ZNG9 492 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 DNAJC25Q9H1X3 360 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 KIAA0556O60303 1618 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 CDC42BPAQ5VT25 1732 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 A0A087WWV3 80 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 CYP2C19P33261 490 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 LRRN4CLQ8ND94 238 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 USP16Q9Y5T5 823 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 IL16Q14005 1332 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 ZNF75DP51815 510 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 STK11IPQ8N1F8 1099 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 TNMDQ9H2S6 317 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 STK26Q9P289 416 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 MRVI1Q9Y6F6 885 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 MYOM1P52179 1685 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 SKILP12757 684 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 BMS1Q14692 1282 aaKnown RBP8.85□□□□□ -0.99
CPSF6-202ENST00000435070 SYCP1Q15431 976 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 DACT1Q9NYF0 836 aa8.85□□□□□ -0.99
CPSF6-202ENST00000435070 ABCC4O15439 1325 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 KDM5AP29375 1690 aaKnown RBP8.84□□□□□ -0.99
CPSF6-202ENST00000435070 SLU7O95391 586 aaKnown RBP8.84□□□□□ -0.99
CPSF6-202ENST00000435070 ZNF165P49910 485 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 ST5P78524 1137 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 SLC20A2Q08357 652 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 UNC5CLQ8IV45 518 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 SOX12O15370 315 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 IL25Q9H293 177 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 LCMT1Q9UIC8 334 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 LOC102724159A0A0B4J2E5 919 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 PWP2Q15269 919 aaKnown RBP8.84□□□□□ -0.99
CPSF6-202ENST00000435070 ARHGAP45Q92619 1136 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 RASSF4Q9H2L5 321 aa8.84□□□□□ -0.99
CPSF6-202ENST00000435070 ATP6V1DQ9Y5K8 247 aa8.84□□□□□ -1
CPSF6-202ENST00000435070 SHROOM2Q13796 1616 aa8.84□□□□□ -1
CPSF6-202ENST00000435070 HTATSF1O43719 755 aaKnown RBP8.83□□□□□ -1
CPSF6-202ENST00000435070 AK2P54819 239 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 SHPRHQ149N8 1683 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 ARHGAP29Q52LW3 1261 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 NECAB1Q8N987 351 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 CCDC191Q8NCU4 936 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 ERO1AQ96HE7 468 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 LRRFIP2Q9Y608 721 aaKnown RBP8.83□□□□□ -1
CPSF6-202ENST00000435070 RPAP1Q9BWH6 1393 aaPredicted RBP8.83□□□□□ -1
CPSF6-202ENST00000435070 GJB2P29033 226 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 F6X3S4 739 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 LARGE1O95461 756 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 CHMLP26374 656 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 GTF2A1P52655 376 aaPredicted RBP8.83□□□□□ -1
CPSF6-202ENST00000435070 TTC6Q86TZ1 520 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.83□□□□□ -1
CPSF6-202ENST00000435070 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.83□□□□□ -1
CPSF6-202ENST00000435070 GOLGA6L19H0YKK7 550 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 SEC31AO94979 1220 aaKnown RBP8.83□□□□□ -1
CPSF6-202ENST00000435070 CLCN6P51797 869 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 TEX35Q5T0J7 233 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 RPAP2Q8IXW5 612 aaPredicted RBP8.83□□□□□ -1
CPSF6-202ENST00000435070 IL1RAPL2Q9NP60 686 aa8.83□□□□□ -1
CPSF6-202ENST00000435070 GPATCH11Q8N954 259 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms